MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 49544 bp
Accession: NZ_CP110933 Location: 1..49544 Organism: Salmonella enterica strain XM3104 Replicon: plasmid unnamed2
Accession: NZ_CP110933 Location: 1..49544 Organism: Salmonella enterica strain XM3104 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ORG44_RS23805 (ORG44_23805) | 1..296 | + | 296 | Protein_0 | cytoplasmic protein | - |
| ORG44_RS23810 (ORG44_23810) | 790..1779 | + | 990 | WP_000461383.1 | RepB family plasmid replication initiator protein | - |
| ORG44_RS23815 (ORG44_23815) | 2110..2229 | - | 120 | Protein_2 | recombinase | - |
| ORG44_RS23820 (ORG44_23820) | 2282..2668 | - | 387 | WP_001541549.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| ORG44_RS23825 (ORG44_23825) | 3374..3676 | + | 303 | WP_000979451.1 | Major pilu subunit operon regulatory protein PapB | VF |
| ORG44_RS23830 (ORG44_23830) | 3951..4469 | + | 519 | WP_079961207.1 | hypothetical protein | VF |
| ORG44_RS23835 (ORG44_23835) | 4696..7104 | + | 2409 | WP_001541550.1 | Outer membrane usher protein FimD | VF |
| ORG44_RS23840 (ORG44_23840) | 7097..7789 | + | 693 | WP_001038509.1 | Chaperone protein FaeE | VF |
| ORG44_RS23845 (ORG44_23845) | 7807..7983 | + | 177 | WP_162299956.1 | hypothetical protein | - |
| ORG44_RS23850 (ORG44_23850) | 8447..9328 | - | 882 | WP_001676666.1 | incFII family plasmid replication initiator RepA | - |
| ORG44_RS23855 (ORG44_23855) | 9309..9386 | - | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| ORG44_RS23860 (ORG44_23860) | 9636..9902 | - | 267 | WP_016710725.1 | replication regulatory protein RepA | - |
| ORG44_RS23865 (ORG44_23865) | 10013..10182 | - | 170 | Protein_12 | phospholipase | - |
| ORG44_RS23870 (ORG44_23870) | 10233..10430 | - | 198 | WP_223155440.1 | hypothetical protein | - |
| ORG44_RS23875 (ORG44_23875) | 10404..10677 | - | 274 | Protein_14 | disulfide bond formation protein DsbA | - |
| ORG44_RS23880 (ORG44_23880) | 10794..11357 | - | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
| ORG44_RS23885 (ORG44_23885) | 11412..12152 | - | 741 | WP_000177630.1 | conjugal transfer pilus acetylase TraX | - |
| ORG44_RS23890 (ORG44_23890) | 12172..14662 | - | 2491 | Protein_17 | Multifunctional conjugation protein TraI | Relaxase |
| ORG44_RS23895 (ORG44_23895) | 14744..14971 | + | 228 | WP_000450263.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| ORG44_RS23900 (ORG44_23900) | 14971..15369 | + | 399 | WP_000911322.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| ORG44_RS23905 (ORG44_23905) | 15378..17567 | - | 2190 | WP_079961212.1 | type IV conjugative transfer system coupling protein TraD | - |
| ORG44_RS23910 (ORG44_23910) | 17939..18670 | - | 732 | WP_001541558.1 | conjugal transfer complement resistance protein TraT | - |
| ORG44_RS23915 (ORG44_23915) | 18973..19215 | - | 243 | WP_024131413.1 | hypothetical protein | - |
| ORG44_RS23920 (ORG44_23920) | 19212..19913 | - | 702 | WP_148201696.1 | hypothetical protein | - |
| ORG44_RS23925 (ORG44_23925) | 20215..20637 | + | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| ORG44_RS23930 (ORG44_23930) | 20637..21911 | + | 1275 | WP_001541560.1 | Y-family DNA polymerase | - |
| ORG44_RS23935 (ORG44_23935) | 21993..22967 | - | 975 | WP_000064274.1 | ParB family protein | - |
| ORG44_RS23940 (ORG44_23940) | 22967..24172 | - | 1206 | WP_000427676.1 | AAA family ATPase | - |
| ORG44_RS23945 (ORG44_23945) | 24587..25528 | + | 942 | WP_000728917.1 | ISNCY family transposase ISSen7 | VF |
| ORG44_RS23950 (ORG44_23950) | 25525..26126 | - | 602 | Protein_29 | DUF2913 family protein | - |
| ORG44_RS23955 (ORG44_23955) | 26183..26599 | - | 417 | WP_010904490.1 | hypothetical protein | - |
| ORG44_RS23960 (ORG44_23960) | 26702..27118 | - | 417 | WP_001541564.1 | hypothetical protein | - |
| ORG44_RS23965 (ORG44_23965) | 27204..28319 | - | 1116 | WP_001247118.1 | DNA-binding protein | - |
| ORG44_RS23970 (ORG44_23970) | 28578..29066 | + | 489 | Protein_33 | cytoplasmic protein | - |
| ORG44_RS23975 (ORG44_23975) | 29721..30461 | + | 741 | WP_001541566.1 | carbonic anhydrase family protein | - |
| ORG44_RS23980 (ORG44_23980) | 30668..31228 | + | 561 | WP_010904491.1 | Tn3 family transposase ISPsy42 | Transposase |
| ORG44_RS23985 (ORG44_23985) | 31212..32876 | + | 1665 | WP_000098783.1 | IS481 family transposase ISAzs36 | Transposase |
| ORG44_RS23990 (ORG44_23990) | 32809..33834 | + | 1026 | WP_077905935.1 | ExeA family protein | - |
| ORG44_RS23995 (ORG44_23995) | 34023..35060 | - | 1038 | WP_001121399.1 | IS630 family transposase ISEc33 | Transposase |
| ORG44_RS24000 (ORG44_24000) | 35669..36562 | + | 894 | WP_001541536.1 | virulence genes transcriptional activator SpvR | - |
| ORG44_RS24005 (ORG44_24005) | 36736..36900 | + | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| ORG44_RS24010 (ORG44_24010) | 37074..37841 | + | 768 | WP_001541537.1 | virulence protein SpvA | - |
| ORG44_RS24015 (ORG44_24015) | 37804..37971 | + | 168 | WP_001526987.1 | hypothetical protein | - |
| ORG44_RS24020 (ORG44_24020) | 38023..39798 | + | 1776 | WP_079961211.1 | Mono(ADP-ribosyl)transferase SpvB | VF |
| ORG44_RS24025 (ORG44_24025) | 40079..40804 | + | 726 | WP_079961210.1 | MAPK phosphothreonine lyase | VF |
| ORG44_RS24030 (ORG44_24030) | 41065..41715 | + | 651 | WP_001541540.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| ORG44_RS24035 (ORG44_24035) | 41842..42267 | - | 426 | WP_000064919.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| ORG44_RS24040 (ORG44_24040) | 42324..42674 | + | 351 | WP_001541541.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| ORG44_RS24045 (ORG44_24045) | 42741..43285 | - | 545 | Protein_48 | Invasin | VF |
| ORG44_RS24050 (ORG44_24050) | 43180..43503 | - | 324 | WP_223557582.1 | LysM peptidoglycan-binding domain-containing protein | - |
| ORG44_RS24055 (ORG44_24055) | 44020..44505 | - | 486 | WP_000905606.1 | membrane protein | - |
| ORG44_RS24060 (ORG44_24060) | 44499..44924 | - | 426 | WP_001134680.1 | CaiF/GrlA family transcriptional regulator | - |
| ORG44_RS24065 (ORG44_24065) | 45152..45703 | - | 552 | WP_000545754.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| ORG44_RS24070 (ORG44_24070) | 45712..46494 | - | 783 | WP_000082169.1 | site-specific integrase | - |
| ORG44_RS24075 (ORG44_24075) | 46529..47050 | - | 522 | WP_000198608.1 | hypothetical protein | - |
| ORG44_RS24080 (ORG44_24080) | 47047..47337 | - | 291 | WP_001266176.1 | hypothetical protein | - |
| ORG44_RS24085 (ORG44_24085) | 47339..47644 | - | 306 | WP_001541545.1 | type II toxin-antitoxin system toxin CcdB | - |
| ORG44_RS24090 (ORG44_24090) | 47646..47864 | - | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | - |
| ORG44_RS24095 (ORG44_24095) | 48540..49061 | + | 522 | WP_079961209.1 | hypothetical protein | - |
| ORG44_RS24100 (ORG44_24100) | 49105..49533 | - | 429 | Protein_59 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|