MGE detailed information
MGE type: SCCmec MGE length: 170770 bp
Accession: NZ_CP110611 Location: 823919..994688 Organism: Staphylococcus epidermidis strain CCSM0287 Replicon: chromosome
Accession: NZ_CP110611 Location: 823919..994688 Organism: Staphylococcus epidermidis strain CCSM0287 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO001_RS03795 | 819044..819370 | + | 327 | WP_001829952.1 | anti-sigma factor antagonist | - |
| OO001_RS03800 | 819372..819851 | + | 480 | WP_001829903.1 | anti-sigma B factor RsbW | - |
| OO001_RS03805 | 819826..820596 | + | 771 | WP_002440602.1 | RNA polymerase sigma factor SigB | - |
| OO001_RS03810 | 820884..823034 | + | 2151 | WP_001832739.1 | Tex family protein | - |
| OO001_RS03815 | 823027..823482 | + | 456 | WP_265365476.1 | SprT family protein | - |
| OO001_RS03820 | 823836..825515 | + | 1680 | WP_002494449.1 | IS1182-like element ISSep1 family transposase | - |
| OO001_RS03825 | 825612..826790 | - | 1179 | WP_115172142.1 | IS110 family transposase ISSep2 | Transposase |
| OO001_RS03855 | 833266..834534 | - | 1269 | WP_001830018.1 | threonine ammonia-lyase IlvA | - |
| OO001_RS03860 | 834549..835118 | - | 570 | WP_002494651.1 | 3-isopropylmalate dehydratase small subunit | - |
| OO001_RS03865 | 835119..836489 | - | 1371 | WP_002457054.1 | 3-isopropylmalate dehydratase large subunit | - |
| OO001_RS03870 | 836505..837548 | - | 1044 | WP_002457055.1 | 3-isopropylmalate dehydrogenase | - |
| OO001_RS03875 | 837545..839080 | - | 1536 | WP_001830007.1 | 2-isopropylmalate synthase | - |
| OO001_RS03880 | 839103..840107 | - | 1005 | WP_001830020.1 | ketol-acid reductoisomerase | - |
| OO001_RS03885 | 840224..840457 | - | 234 | WP_001830009.1 | ACT domain-containing protein | - |
| OO001_RS03890 | 840457..842181 | - | 1725 | WP_044555417.1 | biosynthetic-type acetolactate synthase large subunit | - |
| OO001_RS03895 | 842216..843904 | - | 1689 | WP_265365477.1 | dihydroxy-acid dehydratase | - |
| OO001_RS03900 | 844383..844844 | + | 462 | WP_002455871.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE | - |
| OO001_RS03905 | 844825..845487 | + | 663 | WP_001832485.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB | - |
| OO001_RS03910 | 845460..845921 | + | 462 | WP_002494649.1 | ribosomal protein S18-alanine N-acetyltransferase | - |
| OO001_RS03915 | 845918..846940 | + | 1023 | WP_001830015.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| OO001_RS03920 | 847023..848639 | - | 1617 | WP_002494648.1 | AAA family ATPase | - |
| OO001_RS03925 | 848981..850915 | - | 1935 | WP_038399518.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| OO001_RS03930 | 851262..851897 | + | 636 | WP_002494647.1 | redox-sensing transcriptional repressor Rex | - |
| OO001_RS03935 | 852036..852317 | + | 282 | WP_002494646.1 | PH domain-containing protein | - |
| OO001_RS03940 | 852403..853455 | + | 1053 | WP_265365478.1 | YeeE/YedE family protein | - |
| OO001_RS03945 | 853507..853731 | + | 225 | WP_001830019.1 | sulfurtransferase TusA family protein | - |
| OO001_RS03950 | 854151..855401 | + | 1251 | WP_002494644.1 | ammonium transporter | - |
| OO001_RS03955 | 855537..856490 | + | 954 | WP_002494643.1 | LacI family DNA-binding transcriptional regulator | - |
| OO001_RS03960 | 856750..858222 | + | 1473 | WP_002494642.1 | sucrose-6-phosphate hydrolase | - |
| OO001_RS03965 | 858229..859188 | + | 960 | WP_002468351.1 | carbohydrate kinase | - |
| OO001_RS03970 | 859256..859972 | - | 717 | WP_001829999.1 | LytTR family DNA-binding domain-containing protein | - |
| OO001_RS03975 | 859989..861278 | - | 1290 | WP_002494641.1 | GHKL domain-containing protein | - |
| OO001_RS03980 | 861303..861443 | - | 141 | WP_002468352.1 | cyclic lactone autoinducer peptide | - |
| OO001_RS03985 | 861449..862012 | - | 564 | WP_002468344.1 | accessory gene regulator AgrB | - |
| OO001_RS03990 | 862329..862406 | + | 78 | WP_002494082.1 | delta-hemolysin | - |
| OO001_RS03995 | 862787..863572 | - | 786 | WP_002494640.1 | carbon-nitrogen family hydrolase | - |
| OO001_RS04000 | 863924..865300 | + | 1377 | WP_058221900.1 | MSCRAMM-like protein SdrH | - |
| OO001_RS04005 | 865360..866100 | - | 741 | WP_002494638.1 | CPBP family intramembrane metalloprotease | - |
| OO001_RS04010 | 866275..866559 | + | 285 | WP_001830378.1 | co-chaperone GroES | - |
| OO001_RS04015 | 866615..868234 | + | 1620 | WP_002447508.1 | 60 kDa chaperonin | VF |
| OO001_RS04020 | 868303..869478 | - | 1176 | WP_002494637.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| OO001_RS04025 | 869487..870014 | - | 528 | WP_002470325.1 | hypothetical protein | VF |
| OO001_RS04030 | 870212..870430 | + | 219 | WP_002470299.1 | helix-turn-helix transcriptional regulator | - |
| OO001_RS04035 | 870434..871075 | + | 642 | WP_002470327.1 | phage repressor protein | - |
| OO001_RS04040 | 871089..871409 | + | 321 | WP_002470305.1 | excisionase family DNA-binding protein | - |
| OO001_RS04045 | 871402..871545 | + | 144 | WP_002470330.1 | hypothetical protein | - |
| OO001_RS04050 | 871549..871752 | + | 204 | WP_002470303.1 | hypothetical protein | - |
| OO001_RS04055 | 871754..872092 | + | 339 | WP_002470318.1 | hypothetical protein | - |
| OO001_RS04060 | 872103..872309 | + | 207 | WP_002470311.1 | hypothetical protein | - |
| OO001_RS04065 | 872321..872611 | + | 291 | WP_002470335.1 | DUF1474 family protein | - |
| OO001_RS04070 | 872711..874978 | + | 2268 | WP_002494636.1 | phage/plasmid primase, P4 family | - |
| OO001_RS04075 | 875356..875550 | + | 195 | WP_224479697.1 | hypothetical protein | - |
| OO001_RS04080 | 875818..876438 | + | 621 | WP_002470304.1 | hypothetical protein | - |
| OO001_RS04085 | 876451..876909 | + | 459 | WP_002494635.1 | hypothetical protein | - |
| OO001_RS04090 | 878050..878127 | + | 78 | Protein_800 | HNH endonuclease | - |
| OO001_RS04095 | 878300..878773 | + | 474 | WP_002470314.1 | phage terminase small subunit P27 family | - |
| OO001_RS04100 | 878834..879367 | + | 534 | WP_002470316.1 | hypothetical protein | - |
| OO001_RS04105 | 879364..879681 | + | 318 | WP_002470295.1 | hypothetical protein | - |
| OO001_RS04110 | 879714..880004 | + | 291 | WP_002470328.1 | sigma-70 family RNA polymerase sigma factor | - |
| OO001_RS04115 | 880074..880259 | + | 186 | WP_002494633.1 | hypothetical protein | - |
| OO001_RS04120 | 880714..881217 | + | 504 | WP_002470329.1 | GNAT family N-acetyltransferase | - |
| OO001_RS04125 | 882121..882648 | - | 528 | WP_002470332.1 | DUF4865 family protein | - |
| OO001_RS04130 | 882756..883478 | + | 723 | WP_002470319.1 | LysR family transcriptional regulator | - |
| OO001_RS04135 | 883864..884391 | + | 528 | WP_002470300.1 | hypothetical protein | - |
| OO001_RS04140 | 884590..885180 | + | 591 | WP_002470341.1 | type 1 glutamine amidotransferase family protein | - |
| OO001_RS04145 | 886010..887083 | + | 1074 | WP_002494632.1 | cell wall surface anchor protein | - |
| OO001_RS04150 | 887513..888799 | - | 1287 | WP_002494631.1 | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | - |
| OO001_RS04155 | 888993..889088 | + | 96 | WP_002440392.1 | hypothetical protein | - |
| OO001_RS04160 | 889275..889445 | + | 171 | WP_001832481.1 | hypothetical protein | - |
| OO001_RS04165 | 889762..890139 | + | 378 | WP_001830364.1 | GntR family transcriptional regulator | - |
| OO001_RS04170 | 890139..891053 | + | 915 | WP_001830432.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| OO001_RS04175 | 891034..891693 | + | 660 | WP_002494112.1 | phenol-soluble modulin export ABC transporter permease subunit PmtB | - |
| OO001_RS04180 | 891714..892586 | + | 873 | WP_001830444.1 | phenol-soluble modulin export ABC transporter ATP-binding protein PmtC | - |
| OO001_RS04185 | 892586..893317 | + | 732 | WP_001830379.1 | phenol-soluble modulin export ABC transporter permease subunit PmtD | - |
| OO001_RS04190 | 893487..893938 | - | 452 | Protein_820 | thioredoxin family protein | - |
| OO001_RS04195 | 894107..894592 | + | 486 | WP_001830370.1 | hypothetical protein | - |
| OO001_RS04200 | 894645..895202 | + | 558 | WP_001830393.1 | DUF1700 domain-containing protein | - |
| OO001_RS04205 | 895199..896035 | + | 837 | WP_002485135.1 | DUF4097 family beta strand repeat-containing protein | - |
| OO001_RS04210 | 896089..897129 | - | 1041 | WP_002494630.1 | C45 family autoproteolytic acyltransferase/hydolase | - |
| OO001_RS04215 | 897509..897679 | + | 171 | WP_001830431.1 | hypothetical protein | - |
| OO001_RS04220 | 897893..898195 | - | 303 | Protein_826 | YolD-like family protein | - |
| OO001_RS04225 | 898379..899491 | + | 1113 | WP_000706213.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| OO001_RS04230 | 899494..901557 | + | 2064 | WP_000026850.1 | IS91 family transposase ISWz1 | Transposase |
| OO001_RS04235 | 901566..901931 | + | 366 | WP_000410574.1 | DUF6262 family protein | - |
| OO001_RS04240 | 901936..903306 | + | 1371 | WP_000368919.1 | hypothetical protein | - |
| OO001_RS04245 | 903349..903759 | - | 411 | WP_000612779.1 | YolD-like family protein | - |
| OO001_RS04250 | 904073..904918 | - | 846 | WP_000733622.1 | Beta-lactamase | ARG |
| OO001_RS04255 | 905025..906782 | + | 1758 | WP_001096367.1 | beta-lactam sensor/signal transducer BlaR1 | - |
| OO001_RS04260 | 906772..907152 | + | 381 | WP_001284658.1 | penicillinase repressor BlaI | - |
| OO001_RS04265 | 907240..907341 | - | 102 | Protein_835 | hypothetical protein | - |
| OO001_RS04270 | 907577..908605 | + | 1029 | WP_002468109.1 | lactonase family protein | - |
| OO001_RS04275 | 908717..910096 | - | 1380 | WP_002494628.1 | aldehyde dehydrogenase | - |
| OO001_RS04280 | 910396..911325 | - | 930 | WP_002494627.1 | manganese-dependent inorganic pyrophosphatase | - |
| OO001_RS04285 | 911380..911934 | - | 555 | WP_002489459.1 | isochorismatase family cysteine hydrolase | - |
| OO001_RS04290 | 912126..913223 | + | 1098 | WP_002470308.1 | glycosyl hydrolase family 28-related protein | - |
| OO001_RS04295 | 913676..914479 | - | 804 | WP_001830419.1 | chorismate mutase | - |
| OO001_RS04300 | 914498..915565 | - | 1068 | WP_002494626.1 | nitric oxide synthase oxygenase | - |
| OO001_RS04305 | 915757..917226 | + | 1470 | WP_001830368.1 | nicotinate phosphoribosyltransferase | - |
| OO001_RS04310 | 917219..918046 | + | 828 | WP_002455874.1 | ammonia-dependent NAD(+) synthetase | - |
| OO001_RS04315 | 918120..918746 | + | 627 | WP_001830398.1 | DUF2179 domain-containing protein | - |
| OO001_RS04320 | 918730..918909 | + | 180 | WP_001830380.1 | NETI motif-containing protein | - |
| OO001_RS04325 | 919321..920616 | + | 1296 | WP_002440416.1 | adenylosuccinate lyase | - |
| OO001_RS04330 | 920741..921043 | + | 303 | WP_001830443.1 | YerC/YecD family TrpR-related protein | - |
| OO001_RS04335 | 921367..922059 | + | 693 | WP_001830396.1 | heptaprenylglyceryl phosphate synthase | - |
| OO001_RS04340 | 922056..924245 | + | 2190 | WP_265365479.1 | DNA helicase PcrA | - |
| OO001_RS04345 | 924249..926246 | + | 1998 | WP_265365480.1 | NAD-dependent DNA ligase LigA | - |
| OO001_RS04350 | 926266..927474 | + | 1209 | WP_001830442.1 | CamS family sex pheromone protein | - |
| OO001_RS04355 | 927802..929337 | - | 1536 | WP_002489904.1 | sodium/proline symporter PutP | - |
| OO001_RS04360 | 929715..930017 | + | 303 | WP_002457086.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC | - |
| OO001_RS04365 | 930019..931476 | + | 1458 | WP_002458553.1 | Glutamyl-tRNA(Gln) amidotransferase subunit A | VF |
| OO001_RS04370 | 931489..932916 | + | 1428 | WP_002457087.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB | - |
| OO001_RS04375 | 933141..934091 | + | 951 | WP_002484891.1 | diacylglycerol kinase | - |
| OO001_RS04380 | 934171..935541 | + | 1371 | WP_002484894.1 | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | - |
| OO001_RS04385 | 935685..936227 | + | 543 | WP_001830365.1 | DUF3267 domain-containing protein | - |
| OO001_RS04390 | 936537..937607 | + | 1071 | WP_001830390.1 | DNA polymerase IV | - |
| OO001_RS04395 | 937638..938192 | - | 555 | WP_001830405.1 | 3'-5' exonuclease | - |
| OO001_RS04400 | 938381..938881 | - | 501 | WP_001830392.1 | H-type ferritin FtnA | - |
| OO001_RS04405 | 939103..940416 | + | 1314 | WP_001830445.1 | Mur ligase family protein | - |
| OO001_RS04410 | 940418..941143 | + | 726 | WP_001832482.1 | glutamine amidotransferase | - |
| OO001_RS04415 | 941584..942120 | + | 537 | WP_001830372.1 | hypothetical protein | - |
| OO001_RS04420 | 942271..943257 | - | 987 | WP_002457091.1 | aromatic acid exporter family protein | - |
| OO001_RS04425 | 943431..944186 | + | 756 | WP_001830397.1 | type I methionyl aminopeptidase | - |
| OO001_RS04430 | 944344..944730 | + | 387 | WP_001830382.1 | hypothetical protein | - |
| OO001_RS04435 | 944745..945446 | + | 702 | WP_002457093.1 | cell wall-active antibiotics response protein LiaF | - |
| OO001_RS04440 | 945443..946489 | + | 1047 | WP_001830374.1 | sensor histidine kinase | - |
| OO001_RS04445 | 946479..947108 | + | 630 | WP_001830439.1 | Response regulator protein VraR | VF |
| OO001_RS04450 | 947165..948343 | - | 1179 | WP_001830411.1 | YihY/virulence factor BrkB family protein | - |
| OO001_RS04455 | 948750..949034 | - | 285 | WP_001830401.1 | YtxH domain-containing protein | - |
| OO001_RS04460 | 949042..949506 | - | 465 | WP_001830437.1 | low molecular weight protein-tyrosine-phosphatase | - |
| OO001_RS04465 | 949647..949862 | + | 216 | WP_001830421.1 | DUF1128 domain-containing protein | - |
| OO001_RS04470 | 949864..951105 | + | 1242 | WP_002494624.1 | aminopeptidase | - |
| OO001_RS04475 | 951185..951715 | + | 531 | WP_049383454.1 | acyl-CoA thioesterase | - |
| OO001_RS04480 | 951852..952991 | - | 1140 | WP_192831211.1 | radical SAM/CxCxxxxC motif protein YfkAB | - |
| OO001_RS04485 | 953153..953314 | + | 162 | WP_001830395.1 | SE1561 family protein | - |
| OO001_RS04490 | 953614..954132 | + | 519 | WP_001830414.1 | type 1 glutamine amidotransferase domain-containing protein | - |
| OO001_RS04495 | 954453..955262 | + | 810 | WP_001830409.1 | monofunctional peptidoglycan glycosyltransferase SgtB | - |
| OO001_RS04500 | 955540..956343 | + | 804 | WP_001830417.1 | recombination regulator RecX | - |
| OO001_RS04505 | 956336..956650 | + | 315 | WP_001830430.1 | YfhH family protein | - |
| OO001_RS04510 | 956666..958183 | + | 1518 | WP_001830434.1 | ATP-binding cassette domain-containing protein | - |
| OO001_RS04515 | 958192..959022 | + | 831 | WP_001830426.1 | membrane protein | - |
| OO001_RS04520 | 959208..960182 | - | 975 | WP_001830424.1 | metal-dependent hydrolase | - |
| OO001_RS04525 | 960363..961406 | + | 1044 | WP_001830413.1 | A/G-specific adenine glycosylase | - |
| OO001_RS04530 | 961513..962055 | + | 543 | WP_001830384.1 | DUF402 domain-containing protein | - |
| OO001_RS04535 | 962297..964033 | + | 1737 | WP_001830383.1 | Putative multidrug export ATP-binding/permease protein | VF |
| OO001_RS04540 | 964193..965287 | - | 1095 | WP_002457098.1 | aromatic acid exporter family protein | - |
| OO001_RS04545 | 965594..966883 | - | 1290 | WP_001830429.1 | glutamate-1-semialdehyde 2,1-aminomutase | - |
| OO001_RS04550 | 966964..967422 | + | 459 | WP_001830449.1 | thioredoxin-dependent thiol peroxidase | - |
| OO001_RS04555 | 967425..968375 | + | 951 | WP_002457099.1 | phosphoglycerate dehydrogenase | - |
| OO001_RS04560 | 968471..968923 | + | 453 | WP_001830391.1 | peroxide-responsive transcriptional repressor PerR | - |
| OO001_RS04720 | 977429..978277 | + | 849 | WP_001829860.1 | Glutamyl endopeptidase | VF |
| OO001_RS04725 | 978503..979561 | + | 1059 | WP_002456347.1 | PTS transporter subunit IIC | - |
| OO001_RS04730 | 979800..981257 | + | 1458 | WP_002440300.1 | ABC transporter substrate-binding protein/permease | - |
| OO001_RS04735 | 981250..981972 | + | 723 | WP_002494439.1 | Arginine transport ATP-binding protein ArtM | VF |
| OO001_RS04740 | 982469..982624 | + | 156 | WP_001829854.1 | IS1182 family transposase IS1272 | Transposase |
| OO001_RS04745 | 982834..983964 | + | 1131 | WP_001829814.1 | tRNA epoxyqueuosine(34) reductase QueG | - |
| OO001_RS04750 | 983961..984431 | + | 471 | WP_001829836.1 | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | - |
| OO001_RS04755 | 984589..985188 | + | 600 | WP_002456349.1 | glucosamine-6-phosphate isomerase | Antitoxin Detail |
| OO001_RS04760 | 985212..985391 | + | 180 | WP_002468490.1 | SAS053 family protein | Toxin Detail |
| OO001_RS04765 | 985547..985951 | + | 405 | WP_001829818.1 | hypothetical protein | - |
| OO001_RS04770 | 986136..987521 | + | 1386 | WP_001829862.1 | class II fumarate hydratase | - |
| OO001_RS04775 | 987882..988706 | - | 825 | WP_001829804.1 | RluA family pseudouridine synthase | - |
| OO001_RS04780 | 988865..989998 | + | 1134 | WP_001829819.1 | GAF domain-containing sensor histidine kinase | - |
| OO001_RS04785 | 989991..990614 | + | 624 | WP_001829810.1 | Response regulator protein VraR | VF |
| OO001_RS04790 | 990885..991349 | + | 465 | WP_001829807.1 | helix-turn-helix transcriptional regulator | - |
| OO001_RS04795 | 991531..992661 | + | 1131 | WP_002485606.1 | DUF445 family protein | - |
| OO001_RS04800 | 992734..993078 | + | 345 | WP_001829805.1 | YlbF/YmcA family competence regulator | - |
| OO001_RS04805 | 993086..994771 | - | 1686 | WP_265365481.1 | IS1182-like element ISSep1 family transposase | - |
| OO001_RS04810 | 995258..996454 | + | 1197 | WP_001829843.1 | DNA repair exonuclease | - |
| OO001_RS04815 | 996444..999383 | + | 2940 | WP_002456350.1 | AAA family ATPase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|