MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 146552 bp
Accession: NZ_CP110362 Location: 2956589..3103140 Organism: Dickeya dadantii strain XJ12 Replicon: chromosome
Accession: NZ_CP110362 Location: 2956589..3103140 Organism: Dickeya dadantii strain XJ12 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OL445_RS13425 | 2952595..2953569 | + | 975 | WP_284601656.1 | SDR family oxidoreductase | - |
| OL445_RS13430 | 2953579..2954127 | + | 549 | WP_013316390.1 | sugar transferase | - |
| OL445_RS13435 | 2954196..2955518 | - | 1323 | WP_033111598.1 | ABC transporter substrate-binding protein | - |
| OL445_RS13440 | 2955511..2956590 | - | 1080 | WP_077245433.1 | ABC transporter ATP-binding protein | - |
| OL445_RS13445 | 2956596..2957417 | - | 822 | WP_077245430.1 | phosphodiesterase | - |
| OL445_RS13450 | 2957428..2958315 | - | 888 | WP_038900318.1 | carbohydrate ABC transporter permease | - |
| OL445_RS13455 | 2958305..2959177 | - | 873 | WP_033111599.1 | sugar ABC transporter permease | - |
| OL445_RS13460 | 2959392..2959820 | + | 429 | WP_013316396.1 | TOBE domain-containing protein | - |
| OL445_RS13465 | 2960078..2960998 | + | 921 | WP_284601657.1 | hypothetical protein | VF |
| OL445_RS13470 | 2961820..2963187 | + | 1368 | WP_013316399.1 | NCS2 family permease | - |
| OL445_RS13475 | 2963409..2965055 | + | 1647 | WP_284601658.1 | Na+/H+ antiporter | - |
| OL445_RS13480 | 2965102..2966760 | - | 1659 | WP_038900323.1 | cation/acetate symporter ActP | - |
| OL445_RS13485 | 2966757..2967068 | - | 312 | WP_013316402.1 | DUF485 domain-containing protein | - |
| OL445_RS13490 | 2967190..2969151 | - | 1962 | WP_284601660.1 | acetate--CoA ligase | - |
| OL445_RS13495 | 2970138..2970314 | + | 177 | WP_224062546.1 | hypothetical protein | - |
| OL445_RS13500 | 2970907..2973294 | + | 2388 | WP_013316406.1 | TonB-dependent siderophore receptor | - |
| OL445_RS13505 | 2974226..2975380 | + | 1155 | WP_013316408.1 | mandelate racemase family protein | - |
| OL445_RS13510 | 2975508..2977118 | + | 1611 | WP_038921741.1 | ABC transporter substrate-binding protein | - |
| OL445_RS13515 | 2977205..2978263 | + | 1059 | WP_284601663.1 | ABC transporter permease | - |
| OL445_RS13520 | 2978260..2979165 | + | 906 | WP_013316411.1 | ABC transporter permease | - |
| OL445_RS13525 | 2979167..2980030 | + | 864 | WP_162467706.1 | hypothetical protein | VF |
| OL445_RS13530 | 2980073..2980846 | + | 774 | WP_023637605.1 | hypothetical protein | VF |
| OL445_RS13535 | 2980995..2981531 | + | 537 | WP_013316414.1 | sigma-70 family RNA polymerase sigma factor | - |
| OL445_RS13540 | 2981536..2982489 | + | 954 | WP_013316415.1 | DUF4880 domain-containing protein | - |
| OL445_RS13545 | 2982716..2983726 | + | 1011 | WP_013316416.1 | AI-2E family transporter | - |
| OL445_RS13550 | 2984147..2985673 | - | 1527 | WP_013316418.1 | MFS transporter | - |
| OL445_RS13555 | 2986127..2986336 | + | 210 | WP_013316419.1 | helix-turn-helix transcriptional regulator | - |
| OL445_RS13560 | 2986515..2988011 | - | 1497 | WP_013316420.1 | fructuronate reductase | - |
| OL445_RS13565 | 2988113..2989717 | - | 1605 | WP_013316421.1 | DHA2 family efflux MFS transporter permease subunit | - |
| OL445_RS13570 | 2989704..2990801 | - | 1098 | WP_237703445.1 | HlyD family secretion protein | - |
| OL445_RS13575 | 2990837..2991292 | - | 456 | WP_013316423.1 | MarR family transcriptional regulator | - |
| OL445_RS13580 | 2991610..2992707 | - | 1098 | WP_013316424.1 | L,D-transpeptidase family protein | - |
| OL445_RS13585 | 2993227..2996760 | - | 3534 | WP_013316426.1 | pyruvate:ferredoxin (flavodoxin) oxidoreductase | - |
| OL445_RS13590 | 2997303..2997725 | + | 423 | WP_013316427.1 | hypothetical protein | - |
| OL445_RS13595 | 2997875..2998420 | + | 546 | WP_013316428.1 | GNAT family N-acetyltransferase | - |
| OL445_RS13600 | 2998445..2999068 | - | 624 | WP_284601675.1 | LysE family transporter | - |
| OL445_RS13605 | 2999165..2999890 | + | 726 | WP_013316430.1 | YnfC family lipoprotein | - |
| OL445_RS13610 | 3000020..3001588 | - | 1569 | WP_033112214.1 | glycoside hydrolase 43 family protein | - |
| OL445_RS13615 | 3001611..3003068 | - | 1458 | WP_033111603.1 | glycoside-pentoside-hexuronide (GPH):cation symporter | - |
| OL445_RS13620 | 3003586..3003825 | - | 240 | WP_013316433.1 | DinI family protein | - |
| OL445_RS13625 | 3004140..3004535 | + | 396 | WP_013316434.1 | VOC family protein | - |
| OL445_RS13630 | 3004550..3004834 | + | 285 | WP_013316435.1 | YciI family protein | - |
| OL445_RS13635 | 3004891..3005991 | - | 1101 | WP_013316436.1 | D-alanine--D-alanine ligase | - |
| OL445_RS13640 | 3006179..3007003 | + | 825 | WP_013316437.1 | hypothetical protein | VF |
| OL445_RS13645 | 3007271..3008641 | + | 1371 | WP_033111604.1 | aminotransferase class III-fold pyridoxal phosphate-dependent enzyme | - |
| OL445_RS13650 | 3008652..3009806 | + | 1155 | WP_033111605.1 | iron-containing alcohol dehydrogenase | - |
| OL445_RS13655 | 3009889..3011310 | + | 1422 | WP_042318107.1 | APC family permease | - |
| OL445_RS13660 | 3011354..3012529 | - | 1176 | WP_033111606.1 | MFS transporter | - |
| OL445_RS13665 | 3012636..3013523 | + | 888 | WP_013316442.1 | hypothetical protein | VF |
| OL445_RS13670 | 3013601..3014407 | - | 807 | WP_077245607.1 | 2,5-didehydrogluconate reductase DkgB | - |
| OL445_RS13675 | 3014620..3015477 | - | 858 | WP_038900348.1 | MurR/RpiR family transcriptional regulator | - |
| OL445_RS13680 | 3015790..3017301 | + | 1512 | WP_284601681.1 | CoA-acylating methylmalonate-semialdehyde dehydrogenase | - |
| OL445_RS13685 | 3017329..3019260 | + | 1932 | WP_013316448.1 | 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) | - |
| OL445_RS13690 | 3019448..3019909 | - | 462 | WP_284601682.1 | DNA gyrase inhibitor SbmC | - |
| OL445_RS13695 | 3020168..3021466 | - | 1299 | WP_013316450.1 | hypothetical protein | VF |
| OL445_RS13700 | 3021789..3021986 | - | 198 | WP_148226860.1 | hypothetical protein | - |
| OL445_RS13705 | 3022345..3023094 | - | 750 | WP_249622281.1 | AAA family ATPase | - |
| OL445_RS13710 | 3023357..3023704 | - | 348 | WP_284601683.1 | hypothetical protein | - |
| OL445_RS13715 | 3023857..3024843 | + | 987 | WP_171851631.1 | inositol 2-dehydrogenase | - |
| OL445_RS13720 | 3024982..3025920 | + | 939 | WP_033111610.1 | substrate-binding domain-containing protein | - |
| OL445_RS13725 | 3025977..3027524 | + | 1548 | WP_013316455.1 | hypothetical protein | VF |
| OL445_RS13730 | 3027541..3028575 | + | 1035 | WP_033112216.1 | ABC transporter permease | - |
| OL445_RS13735 | 3028593..3029726 | + | 1134 | WP_013316457.1 | Gfo/Idh/MocA family oxidoreductase | - |
| OL445_RS13740 | 3029781..3031766 | + | 1986 | WP_284601685.1 | 5-dehydro-2-deoxygluconokinase | - |
| OL445_RS13745 | 3031793..3032683 | + | 891 | WP_284601687.1 | myo-inosose-2 dehydratase | - |
| OL445_RS13750 | 3032708..3033535 | + | 828 | WP_284601689.1 | 5-deoxy-glucuronate isomerase | - |
| OL445_RS13755 | 3033921..3035024 | - | 1104 | WP_013316463.1 | lytic murein transglycosylase B | - |
| OL445_RS13760 | 3035127..3036050 | - | 924 | WP_013316464.1 | LysR family transcriptional regulator | - |
| OL445_RS13765 | 3036231..3037445 | + | 1215 | WP_284601691.1 | MFS transporter | - |
| OL445_RS13770 | 3037473..3038585 | + | 1113 | WP_038900362.1 | o-succinylbenzoate synthase | - |
| OL445_RS13775 | 3038895..3039827 | + | 933 | WP_038900363.1 | nucleoside recognition domain-containing protein | - |
| OL445_RS13780 | 3040311..3040538 | - | 228 | WP_284601692.1 | hypothetical protein | - |
| OL445_RS13785 | 3040721..3041503 | - | 783 | WP_226055362.1 | transporter substrate-binding domain-containing protein | - |
| OL445_RS13790 | 3041998..3042633 | - | 636 | WP_284601693.1 | NAD(P)H-binding protein | - |
| OL445_RS13795 | 3042690..3043097 | - | 408 | WP_284601695.1 | DoxX family protein | - |
| OL445_RS13800 | 3043178..3043564 | + | 387 | WP_013316472.1 | helix-turn-helix domain-containing protein | - |
| OL445_RS13805 | 3043771..3044592 | - | 822 | WP_224062569.1 | hypothetical protein | VF |
| OL445_RS13810 | 3044693..3045979 | - | 1287 | WP_077245065.1 | beta-ketoacyl-ACP synthase II | - |
| OL445_RS13815 | 3046150..3046956 | - | 807 | WP_038900371.1 | hypothetical protein | VF |
| OL445_RS13820 | 3047000..3050065 | - | 3066 | WP_013316476.1 | efflux RND transporter permease subunit | - |
| OL445_RS13825 | 3050062..3051177 | - | 1116 | WP_013316477.1 | efflux RND transporter periplasmic adaptor subunit | - |
| OL445_RS13830 | 3051271..3051888 | - | 618 | WP_013316478.1 | TetR/AcrR family transcriptional regulator | - |
| OL445_RS13835 | 3052014..3053495 | + | 1482 | WP_077245067.1 | hypothetical protein | VF |
| OL445_RS13840 | 3053528..3054937 | + | 1410 | WP_284601699.1 | MATE family efflux transporter | - |
| OL445_RS13845 | 3055471..3056591 | + | 1121 | WP_139348286.1 | IS3 family transposase ISKpn34 | Transposase |
| OL445_RS13850 | 3056873..3057556 | + | 684 | WP_033111618.1 | hypothetical protein | - |
| OL445_RS13855 | 3057777..3059531 | + | 1755 | WP_284601700.1 | NACHT domain-containing protein | - |
| OL445_RS13860 | 3059531..3062743 | + | 3213 | WP_284601701.1 | hypothetical protein | - |
| OL445_RS13865 | 3062815..3064053 | - | 1239 | WP_013316485.1 | hypothetical protein ; Integrase | Integrase |
| OL445_RS13870 | 3064431..3065606 | - | 1176 | WP_284601704.1 | hypothetical protein ; Integrase | Integrase |
| OL445_RS13875 | 3065561..3065770 | - | 210 | WP_027711199.1 | hypothetical protein | - |
| OL445_RS13880 | 3066164..3066673 | + | 510 | WP_284601706.1 | DNA repair protein RadC | - |
| OL445_RS13885 | 3067264..3067575 | + | 312 | WP_284601707.1 | DUF736 domain-containing protein | - |
| OL445_RS13890 | 3067775..3068014 | + | 240 | WP_013316490.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| OL445_RS13895 | 3068017..3068325 | + | 309 | WP_013316491.1 | CcdB family protein | Toxin Detail |
| OL445_RS13900 | 3068511..3069107 | + | 597 | WP_148226861.1 | hypothetical protein | - |
| OL445_RS13905 | 3069441..3070238 | + | 798 | WP_013316493.1 | DUF2285 domain-containing protein | - |
| OL445_RS13910 | 3070322..3070618 | + | 297 | WP_033111622.1 | helix-turn-helix domain-containing protein | - |
| OL445_RS13915 | 3070645..3071457 | + | 813 | WP_013316495.1 | replication initiator protein A | - |
| OL445_RS13920 | 3071768..3072313 | + | 546 | WP_013316497.1 | S26 family signal peptidase | - |
| OL445_RS13925 | 3072514..3074454 | + | 1941 | WP_284601711.1 | relaxase/mobilization nuclease and DUF3363 domain-containing protein | - |
| OL445_RS13930 | 3074492..3074821 | - | 330 | WP_107768169.1 | helix-turn-helix transcriptional regulator | - |
| OL445_RS13935 | 3075745..3076626 | + | 882 | WP_284601712.1 | hypothetical protein | - |
| OL445_RS13940 | 3076609..3079140 | - | 2532 | WP_284601713.1 | DEAD/DEAH box helicase | - |
| OL445_RS13945 | 3079137..3080036 | - | 900 | WP_284601715.1 | DUF1837 domain-containing protein | - |
| OL445_RS13950 | 3080588..3081324 | + | 737 | Protein_2705 | IS110 family transposase ISSaen1 | Transposase |
| OL445_RS13955 | 3082009..3082458 | - | 450 | WP_284601717.1 | hypothetical protein | - |
| OL445_RS13960 | 3083048..3083386 | - | 339 | WP_284601719.1 | helix-turn-helix transcriptional regulator | - |
| OL445_RS13965 | 3083526..3083831 | + | 306 | WP_027711220.1 | helix-turn-helix transcriptional regulator | - |
| OL445_RS13970 | 3084005..3084919 | + | 915 | WP_033111628.1 | hypothetical protein | VF |
| OL445_RS13975 | 3084944..3085204 | + | 261 | WP_197062338.1 | entry exclusion lipoprotein TrbK | - |
| OL445_RS13980 | 3085422..3087188 | + | 1767 | Protein_2711 | hypothetical protein | VF |
| OL445_RS13985 | 3087374..3087814 | + | 441 | WP_284601723.1 | CopG family transcriptional regulator | - |
| OL445_RS13990 | 3087811..3088821 | + | 1011 | WP_284601725.1 | hypothetical protein | VF |
| OL445_RS13995 | 3088818..3089165 | + | 348 | WP_081977386.1 | TrbC/VirB2 family protein | - |
| OL445_RS14000 | 3089162..3089434 | + | 273 | WP_038922313.1 | VirB3 family type IV secretion system protein | - |
| OL445_RS14005 | 3089445..3091895 | + | 2451 | WP_284601727.1 | conjugal transfer protein TrbE | - |
| OL445_RS14010 | 3091895..3092626 | + | 732 | WP_033111631.1 | P-type conjugative transfer protein TrbJ | - |
| OL445_RS14015 | 3092626..3093789 | + | 1164 | WP_284603800.1 | P-type conjugative transfer protein TrbL | - |
| OL445_RS14020 | 3093792..3094496 | + | 705 | WP_284601728.1 | conjugal transfer protein TrbF | - |
| OL445_RS14025 | 3094493..3095374 | + | 882 | WP_284601729.1 | P-type conjugative transfer protein TrbG | - |
| OL445_RS14030 | 3095377..3096615 | + | 1239 | WP_284601731.1 | hypothetical protein | VF |
| OL445_RS14035 | 3096663..3096974 | - | 312 | WP_210175985.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| OL445_RS14040 | 3096971..3097255 | - | 285 | WP_038910903.1 | damage-inducible protein J | - |
| OL445_RS14045 | 3097648..3098433 | - | 786 | WP_284601733.1 | DUF3825 domain-containing protein | - |
| OL445_RS14050 | 3098888..3100513 | - | 1626 | WP_284601735.1 | hypothetical protein | - |
| OL445_RS14055 | 3100621..3100986 | + | 366 | WP_253000065.1 | hypothetical protein | - |
| OL445_RS14060 | 3101716..3102015 | - | 300 | WP_071604502.1 | PAAR domain-containing protein | - |
| OL445_RS14065 | 3102027..3102791 | - | 765 | WP_248588297.1 | cell division cycle 123 family protein | - |
| OL445_RS14070 | 3102840..3103364 | - | 525 | WP_284601737.1 | SMI1/KNR4 family protein | - |
| OL445_RS14075 | 3103366..3104331 | - | 966 | WP_038910353.1 | HNH endonuclease | - |
| OL445_RS14080 | 3104360..3104746 | - | 387 | WP_171851580.1 | hypothetical protein | - |
| OL445_RS14085 | 3104733..3105344 | - | 612 | WP_284601738.1 | DUF4123 domain-containing protein | - |
| OL445_RS14090 | 3106100..3107668 | - | 1569 | Protein_2733 | type VI secretion system tip protein VgrG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|