MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 62981 bp
Accession: NZ_CP109939 Location: 1042142..1105122 Organism: Streptococcus suis strain ID36054 Replicon: chromosome
Accession: NZ_CP109939 Location: 1042142..1105122 Organism: Streptococcus suis strain ID36054 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OHM47_RS05315 (OHM47_05315) | 1038538..1039542 | + | 1005 | WP_014636947.1 | hypothetical protein | - |
| OHM47_RS05320 (OHM47_05320) | 1039532..1039996 | + | 465 | Protein_1021 | hypothetical protein | - |
| OHM47_RS05325 (OHM47_05325) | 1040580..1045475 | + | 4896 | WP_264495613.1 | GbpC/Spa domain-containing protein | - |
| OHM47_RS05330 (OHM47_05330) | 1045476..1045667 | + | 192 | WP_001068448.1 | calcium-binding protein | - |
| OHM47_RS05335 (OHM47_05335) | 1045651..1046202 | + | 552 | WP_264495596.1 | hypothetical protein | - |
| OHM47_RS05340 (OHM47_05340) | 1046251..1053075 | + | 6825 | WP_264495614.1 | SNF2-related protein | - |
| OHM47_RS05345 (OHM47_05345) | 1053146..1053445 | + | 300 | WP_000194866.1 | DUF5962 family protein | - |
| OHM47_RS05350 (OHM47_05350) | 1053459..1053749 | + | 291 | WP_014636941.1 | DUF5966 family protein | - |
| OHM47_RS05355 (OHM47_05355) | 1053845..1054576 | + | 732 | WP_014636940.1 | hypothetical protein | - |
| OHM47_RS05360 (OHM47_05360) | 1054516..1054890 | + | 375 | WP_001129923.1 | TnpV protein | - |
| OHM47_RS05365 (OHM47_05365) | 1055257..1057176 | + | 1920 | WP_014636938.1 | tetracycline resistance ribosomal protection protein Tet(O) | VF |
| OHM47_RS05370 (OHM47_05370) | 1057231..1057401 | + | 171 | WP_004614788.1 | cysteine-rich KTR domain-containing protein | - |
| OHM47_RS05375 (OHM47_05375) | 1057889..1058398 | + | 510 | WP_249547167.1 | sigma-70 family RNA polymerase sigma factor | - |
| OHM47_RS05380 (OHM47_05380) | 1058493..1058918 | + | 426 | WP_000323895.1 | sigma-70 family RNA polymerase sigma factor | - |
| OHM47_RS05385 (OHM47_05385) | 1059002..1059172 | + | 171 | WP_000331638.1 | hypothetical protein | - |
| OHM47_RS05390 (OHM47_05390) | 1059263..1059379 | + | 117 | Protein_1035 | RNA polymerase subunit sigma | - |
| OHM47_RS05395 (OHM47_05395) | 1059631..1060656 | + | 1026 | WP_001170964.1 | AAA family ATPase | - |
| OHM47_RS05400 (OHM47_05400) | 1061181..1062146 | + | 966 | WP_001820668.1 | MobV family relaxase | - |
| OHM47_RS05405 (OHM47_05405) | 1062155..1063009 | + | 855 | WP_000743700.1 | ParB/RepB/Spo0J family partition protein | - |
| OHM47_RS05410 (OHM47_05410) | 1063055..1063285 | + | 231 | WP_248031977.1 | PC4/YdbC family ssDNA-binding protein | - |
| OHM47_RS05415 (OHM47_05415) | 1063285..1063548 | + | 264 | WP_000253176.1 | hypothetical protein | - |
| OHM47_RS05420 (OHM47_05420) | 1063603..1063779 | + | 177 | WP_002935078.1 | hypothetical protein | - |
| OHM47_RS05425 (OHM47_05425) | 1063793..1064053 | - | 261 | Protein_1042 | topoisomerase DNA-binding C4 zinc finger domain-containing protein | - |
| OHM47_RS05430 (OHM47_05430) | 1064223..1064960 | - | 738 | WP_014636935.1 | rRNA adenine N-6-methyltransferase | ARG |
| OHM47_RS05435 (OHM47_05435) | 1064998..1065153 | - | 156 | Protein_1044 | antitoxin | - |
| OHM47_RS05440 (OHM47_05440) | 1065170..1065385 | - | 216 | WP_002321610.1 | peptide-binding protein | - |
| OHM47_RS05445 (OHM47_05445) | 1065477..1066373 | - | 897 | WP_001809760.1 | ParA family protein | - |
| OHM47_RS05450 (OHM47_05450) | 1066499..1068142 | + | 1644 | WP_002935076.1 | hypothetical protein ; Integrase | Integrase |
| OHM47_RS05455 (OHM47_05455) | 1068206..1069282 | + | 1077 | WP_172008517.1 | toprim domain-containing protein | - |
| OHM47_RS05460 (OHM47_05460) | 1069336..1069563 | + | 228 | WP_000110922.1 | DUF5965 family protein | - |
| OHM47_RS05465 (OHM47_05465) | 1069560..1069949 | + | 390 | WP_000048066.1 | DUF5945 family protein | - |
| OHM47_RS05470 (OHM47_05470) | 1070000..1070290 | + | 291 | WP_000667951.1 | hypothetical protein | - |
| OHM47_RS05475 (OHM47_05475) | 1070360..1070836 | + | 477 | WP_000578719.1 | ISNCY family transposase ISH7A | Transposase |
| OHM47_RS05480 (OHM47_05480) | 1070836..1071528 | + | 693 | Protein_1053 | zeta toxin family protein | - |
| OHM47_RS05485 (OHM47_05485) | 1071604..1074147 | + | 2544 | WP_000601012.1 | AAA family ATPase | - |
| OHM47_RS05490 (OHM47_05490) | 1074464..1074826 | + | 363 | WP_014636933.1 | SAG1252 family conjugative relaxosome accessory protein | - |
| OHM47_RS05495 (OHM47_05495) | 1074833..1075198 | + | 366 | WP_014636932.1 | MobC family plasmid mobilization relaxosome protein | - |
| OHM47_RS05500 (OHM47_05500) | 1075185..1077050 | + | 1866 | WP_014636931.1 | SAG1250 family conjugative relaxase | - |
| OHM47_RS05505 (OHM47_05505) | 1077232..1077456 | + | 225 | WP_014636930.1 | helix-turn-helix transcriptional regulator | - |
| OHM47_RS05510 (OHM47_05510) | 1077735..1077962 | + | 228 | WP_001258320.1 | DUF3173 family protein | - |
| OHM47_RS05515 (OHM47_05515) | 1077985..1079184 | + | 1200 | WP_014636929.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| OHM47_RS05520 (OHM47_05520) | 1079369..1079725 | + | 357 | WP_225533303.1 | hypothetical protein | - |
| OHM47_RS05525 (OHM47_05525) | 1079746..1080120 | + | 375 | Protein_1062 | HAD family hydrolase | - |
| OHM47_RS05530 (OHM47_05530) | 1080316..1081650 | + | 1335 | WP_024394866.1 | methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO | - |
| OHM47_RS05535 (OHM47_05535) | 1081727..1082562 | + | 836 | Protein_1064 | AraC family transcriptional regulator | - |
| OHM47_RS05540 (OHM47_05540) | 1082627..1083631 | + | 1005 | WP_024394865.1 | crosslink repair DNA glycosylase YcaQ family protein | - |
| OHM47_RS05545 (OHM47_05545) | 1083745..1084572 | + | 828 | WP_011922416.1 | alpha/beta hydrolase | - |
| OHM47_RS05550 (OHM47_05550) | 1084603..1085328 | + | 726 | WP_024394864.1 | alpha/beta hydrolase-fold protein | - |
| OHM47_RS05555 (OHM47_05555) | 1085346..1086512 | + | 1167 | WP_024394863.1 | ATP-grasp domain-containing protein | - |
| OHM47_RS05560 (OHM47_05560) | 1086652..1086792 | + | 141 | WP_012775106.1 | hypothetical protein | - |
| OHM47_RS05565 (OHM47_05565) | 1086805..1087182 | + | 378 | WP_011922413.1 | NisI/SpaI family lantibiotic immunity lipoprotein | - |
| OHM47_RS05570 (OHM47_05570) | 1087203..1088105 | + | 903 | WP_011922412.1 | Bacitracin transport ATP-binding protein BcrA | VF |
| OHM47_RS05575 (OHM47_05575) | 1088107..1088853 | + | 747 | WP_011922411.1 | ABC transporter permease | - |
| OHM47_RS05580 (OHM47_05580) | 1088855..1089589 | + | 735 | WP_011922410.1 | ABC transporter permease | - |
| OHM47_RS05585 (OHM47_05585) | 1089725..1090477 | + | 753 | WP_011922409.1 | ABC transporter ATP-binding protein YxdL | VF |
| OHM47_RS05590 (OHM47_05590) | 1090478..1092449 | + | 1972 | Protein_1075 | FtsX-like permease family protein | - |
| OHM47_RS05595 (OHM47_05595) | 1092541..1092780 | + | 240 | WP_002935014.1 | DUF6290 family protein | Antitoxin Detail |
| OHM47_RS05600 (OHM47_05600) | 1092770..1093027 | + | 258 | WP_002935012.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| OHM47_RS05605 (OHM47_05605) | 1093066..1093731 | + | 666 | WP_009909826.1 | Response regulator protein GraR | VF |
| OHM47_RS05610 (OHM47_05610) | 1093728..1094669 | + | 942 | WP_002935009.1 | sensor histidine kinase | - |
| OHM47_RS05615 (OHM47_05615) | 1094745..1096253 | + | 1509 | WP_013730362.1 | Phosphomannomutase/phosphoglucomutase | VF |
| OHM47_RS05620 (OHM47_05620) | 1096323..1097393 | - | 1071 | WP_002935006.1 | Tyrosine recombinase XerS ; Integrase | Integrase |
| OHM47_RS05625 (OHM47_05625) | 1097560..1098081 | - | 522 | WP_002935005.1 | AAA family ATPase | - |
| OHM47_RS05630 (OHM47_05630) | 1098147..1098887 | - | 741 | WP_009909823.1 | DUF3307 domain-containing protein | - |
| OHM47_RS05635 (OHM47_05635) | 1098891..1099559 | - | 669 | WP_002935003.1 | SatD family protein | - |
| OHM47_RS05640 (OHM47_05640) | 1099753..1101327 | - | 1575 | WP_002935002.1 | signal recognition particle protein | - |
| OHM47_RS05645 (OHM47_05645) | 1101340..1101672 | - | 333 | WP_002935001.1 | putative DNA-binding protein | - |
| OHM47_RS05650 (OHM47_05650) | 1101775..1102473 | - | 699 | WP_002943214.1 | GntR family transcriptional regulator | - |
| OHM47_RS05655 (OHM47_05655) | 1102749..1104299 | + | 1551 | WP_002934999.1 | glutamine-hydrolyzing GMP synthase | - |
| OHM47_RS05660 (OHM47_05660) | 1104461..1105510 | - | 1050 | WP_002934997.1 | 5-methylcytosine-specific restriction endonuclease system specificity protein McrC | - |
| OHM47_RS05665 (OHM47_05665) | 1105507..1107204 | - | 1698 | WP_024394313.1 | AAA family ATPase | - |
| OHM47_RS05670 (OHM47_05670) | 1107405..1108193 | + | 789 | WP_002934995.1 | hypothetical protein | - |
| OHM47_RS05675 (OHM47_05675) | 1108311..1109168 | + | 858 | WP_074390708.1 | hypothetical protein | - |
| OHM47_RS05680 (OHM47_05680) | 1109189..1109521 | - | 333 | WP_002934993.1 | HIRAN domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|