MGE detailed information
MGE type: Prophage MGE length: 91348 bp
Accession: NZ_CP104645 Location: 4957425..5048772 Organism: Escherichia coli strain PNUSAE019785 Replicon: chromosome
Accession: NZ_CP104645 Location: 4957425..5048772 Organism: Escherichia coli strain PNUSAE019785 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5932_RS24495 (4953939) | 4953939..4954685 | + | 747 | WP_000636568.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| N5932_RS24500 (4954774) | 4954774..4955460 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| N5932_RS24505 (4955637) | 4955637..4955840 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| N5932_RS24510 (4955876) | 4955876..4957336 | - | 1461 | WP_261577636.1 | mannitol dehydrogenase family protein | - |
| N5932_RS24515 (4957425) | 4957425..4958708 | - | 1284 | Protein_4777 | MHS family MFS transporter YdfJ | - |
| N5932_RS24520 (4958840) | 4958840..4959082 | + | 243 | WP_001120551.1 | DinI-like family protein | - |
| N5932_RS24525 (4959244) | 4959244..4959885 | - | 642 | WP_001143804.1 | hypothetical protein | VF |
| N5932_RS24530 (4959967) | 4959967..4960596 | - | 630 | WP_001303500.1 | hypothetical protein | VF |
| N5932_RS24535 (4960669) | 4960669..4961244 | - | 576 | WP_001131658.1 | hypothetical protein | VF |
| N5932_RS24540 (4961358) | 4961358..4961627 | - | 270 | WP_001023407.1 | phage tail fiber C-terminal domain-containing protein | - |
| N5932_RS24545 (4961629) | 4961629..4962942 | - | 1314 | WP_000268848.1 | ISNCY family transposase KIS | Transposase |
| N5932_RS24550 (4963006) | 4963006..4963605 | - | 600 | WP_001230508.1 | Outer membrane protein X | VF |
| N5932_RS24555 (4963673) | 4963673..4966239 | - | 2567 | Protein_4785 | host specificity protein J | - |
| N5932_RS24560 (4966242) | 4966242..4967753 | - | 1512 | Protein_4786 | host specificity protein J | - |
| N5932_RS24565 (4968095) | 4968095..4968676 | - | 582 | WP_001089999.1 | tail assembly protein | - |
| N5932_RS24570 (4968673) | 4968673..4969416 | - | 744 | WP_000194720.1 | C40 family peptidase | - |
| N5932_RS24575 (4969427) | 4969427..4970125 | - | 699 | WP_001179510.1 | phage minor tail protein L | - |
| N5932_RS24580 (4970125) | 4970125..4970467 | - | 343 | Protein_4790 | phage tail protein | - |
| N5932_RS24585 (4970460) | 4970460..4973703 | - | 3244 | Protein_4791 | phage tail tape measure protein | - |
| N5932_RS24590 (4973755) | 4973755..4973964 | - | 210 | WP_001453698.1 | DUF4035 domain-containing protein | - |
| N5932_RS24595 (4974064) | 4974064..4974435 | - | 372 | Protein_4793 | phage tail assembly chaperone | - |
| N5932_RS24600 (4974441) | 4974441..4975157 | - | 717 | WP_001275508.1 | major tail subunit | - |
| N5932_RS24605 (4975216) | 4975216..4975560 | - | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| N5932_RS24610 (4975557) | 4975557..4976003 | - | 447 | WP_000573374.1 | HK97 gp10 family phage protein | - |
| N5932_RS24615 (4976000) | 4976000..4976350 | - | 351 | WP_001007901.1 | phage head closure protein | - |
| N5932_RS24620 (4976360) | 4976360..4976686 | - | 327 | WP_000126026.1 | head-tail connector protein | - |
| N5932_RS24625 (4976683) | 4976683..4978781 | - | 2099 | Protein_4799 | phage portal protein | - |
| N5932_RS24630 (4978727) | 4978727..4978948 | - | 222 | WP_001063023.1 | hypothetical protein | - |
| N5932_RS24635 (4978993) | 4978993..4979589 | - | 597 | Protein_4801 | phage major capsid protein | - |
| N5932_RS24640 (4979591) | 4979591..4979881 | - | 291 | Protein_4802 | YdfR family protein | - |
| N5932_RS24645 (4979905) | 4979905..4980120 | - | 216 | WP_024180155.1 | class II holin family protein | - |
| N5932_RS24650 (4980559) | 4980559..4982409 | - | 1851 | WP_000023184.1 | SASA family carbohydrate esterase | - |
| N5932_RS24655 (4982386) | 4982386..4982528 | + | 143 | Protein_4805 | hypothetical protein | - |
| N5932_RS24660 (4982723) | 4982723..4982890 | - | 168 | WP_000216636.1 | DUF3927 family protein | - |
| N5932_RS24665 (4982887) | 4982887..4983318 | - | 432 | WP_001302123.1 | tellurite resistance protein | - |
| N5932_RS24680 (4983769) | 4983769..4984482 | - | 714 | WP_000301797.1 | helix-turn-helix domain-containing protein | - |
| N5932_RS24685 (4984618) | 4984618..4984815 | - | 198 | WP_000917763.1 | hypothetical protein | - |
| N5932_RS24690 (4985040) | 4985040..4985594 | - | 555 | WP_000640035.1 | DUF1133 family protein | - |
| N5932_RS24695 (4985657) | 4985657..4985962 | - | 306 | WP_001217444.1 | RusA family crossover junction endodeoxyribonuclease | - |
| N5932_RS24700 (4985975) | 4985975..4987024 | - | 1050 | WP_001265229.1 | DUF968 domain-containing protein | - |
| N5932_RS24705 (4987026) | 4987026..4987298 | - | 273 | WP_000191872.1 | hypothetical protein | - |
| N5932_RS24710 (4987420) | 4987420..4987764 | - | 345 | WP_000756596.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| N5932_RS24715 (4987884) | 4987884..4988039 | - | 156 | WP_000813258.1 | Hok/Gef family protein | Toxin Detail |
| N5932_RS24720 (4988330) | 4988330..4988887 | - | 558 | WP_000104474.1 | DUF551 domain-containing protein | - |
| N5932_RS24725 (4988889) | 4988889..4989107 | - | 219 | WP_000683609.1 | DUF4014 family protein | - |
| N5932_RS24730 (4989235) | 4989235..4989546 | - | 312 | WP_001289673.1 | hypothetical protein | - |
| N5932_RS24735 (4989539) | 4989539..4989766 | - | 228 | WP_000699809.1 | hypothetical protein | - |
| N5932_RS24740 (4989763) | 4989763..4990044 | - | 282 | WP_000603384.1 | DNA-binding protein | - |
| N5932_RS24745 (4990077) | 4990077..4990793 | - | 717 | WP_000450627.1 | DUF1627 domain-containing protein | - |
| N5932_RS24750 (4990827) | 4990827..4991288 | - | 462 | WP_000139447.1 | replication protein P | - |
| N5932_RS24755 (4991281) | 4991281..4992324 | - | 1044 | WP_001262402.1 | DnaT-like ssDNA-binding domain-containing protein | - |
| N5932_RS24760 (4992393) | 4992393..4992818 | - | 426 | WP_000693878.1 | toxin YdaT family protein | - |
| N5932_RS24765 (4992802) | 4992802..4993044 | - | 243 | WP_000747948.1 | Cro/CI family transcriptional regulator | - |
| N5932_RS24770 (4993436) | 4993436..4993774 | + | 339 | WP_001416688.1 | S24 family peptidase | - |
| N5932_RS24775 (4994067) | 4994067..4994219 | + | 153 | WP_000380316.1 | DUF1391 family protein | - |
| N5932_RS24780 (4994231) | 4994231..4994869 | + | 639 | WP_000394548.1 | hypothetical protein | - |
| N5932_RS24785 (4994870) | 4994870..4995079 | - | 210 | WP_001133037.1 | hypothetical protein | - |
| N5932_RS24790 (4995644) | 4995644..4995832 | + | 189 | WP_000449175.1 | cell division inhibition protein DicB | - |
| N5932_RS24795 (4995829) | 4995829..4996017 | + | 189 | WP_000199475.1 | DUF1482 family protein | - |
| N5932_RS24800 (4996110) | 4996110..4997348 | + | 1239 | Protein_4832 | exonuclease | - |
| N5932_RS24805 (4997336) | 4997336..4997887 | + | 552 | Protein_4833 | Putative defective protein IntQ ; Integrase | Integrase |
| N5932_RS24810 (4998065) | 4998065..4998307 | + | 243 | WP_001120551.1 | DinI-like family protein | - |
| N5932_RS24815 (4998357) | 4998357..4999175 | - | 819 | Protein_4835 | IS256 family transposase IS1414 | Transposase |
| N5932_RS24820 (4999648) | 4999648..4999995 | + | 348 | WP_261577623.1 | IS66 family transposase ISEc8 | Transposase |
| N5932_RS24825 (5000045) | 5000045..5001582 | + | 1538 | Protein_4837 | IS66 family transposase ISEc8 | Transposase |
| N5932_RS24830 (5001620) | 5001620..5002015 | - | 396 | Protein_4838 | IS256 family transposase ISEic2 | Transposase |
| N5932_RS24835 (5002165) | 5002165..5002816 | - | 652 | Protein_4839 | type III secretion system effector NleG7 | - |
| N5932_RS24840 (5003527) | 5003527..5004102 | - | 576 | WP_001131642.1 | hypothetical protein | VF |
| N5932_RS24845 (5004216) | 5004216..5004485 | - | 270 | WP_001023362.1 | phage tail fiber C-terminal domain-containing protein | - |
| N5932_RS24850 (5004487) | 5004487..5005710 | - | 1224 | WP_000268860.1 | prophage tail fiber N-terminal domain-containing protein | - |
| N5932_RS24855 (5005774) | 5005774..5006372 | - | 599 | Protein_4843 | Outer membrane protein X | VF |
| N5932_RS24860 (5006440) | 5006440..5009914 | - | 3475 | Protein_4844 | host specificity protein J | - |
| N5932_RS24865 (5010177) | 5010177..5010539 | - | 363 | Protein_4845 | phage minor tail protein L | - |
| N5932_RS24870 (5010539) | 5010539..5010880 | - | 342 | WP_000807954.1 | phage tail protein | - |
| N5932_RS24875 (5010873) | 5010873..5014116 | - | 3244 | Protein_4847 | phage tail tape measure protein | - |
| N5932_RS24880 (5014164) | 5014164..5014373 | - | 210 | WP_001453746.1 | DUF4035 domain-containing protein | - |
| N5932_RS24885 (5014469) | 5014469..5014843 | - | 375 | WP_000710952.1 | phage tail assembly chaperone | - |
| N5932_RS24890 (5014858) | 5014858..5015574 | - | 717 | WP_261577637.1 | major tail subunit | - |
| N5932_RS24895 (5015640) | 5015640..5015983 | - | 344 | Protein_4851 | DUF3168 domain-containing protein | - |
| N5932_RS24900 (5015980) | 5015980..5016426 | - | 447 | WP_000573374.1 | HK97 gp10 family phage protein | - |
| N5932_RS24905 (5016423) | 5016423..5016773 | - | 351 | WP_001007905.1 | phage head closure protein | - |
| N5932_RS24910 (5016783) | 5016783..5017109 | - | 327 | WP_000125988.1 | head-tail connector protein | - |
| N5932_RS24915 (5017112) | 5017112..5019691 | - | 2580 | WP_000267295.1 | phage portal protein | - |
| N5932_RS24920 (5019637) | 5019637..5019858 | - | 222 | WP_001063099.1 | hypothetical protein | - |
| N5932_RS24925 (5019903) | 5019903..5021840 | - | 1938 | WP_000173030.1 | phage major capsid protein | - |
| N5932_RS24930 (5021904) | 5021904..5023565 | - | 1662 | WP_001301438.1 | terminase large subunit | - |
| N5932_RS24935 (5023562) | 5023562..5024125 | - | 564 | WP_261577638.1 | terminase small subunit | - |
| N5932_RS24940 (5024417) | 5024417..5024782 | - | 366 | WP_000279796.1 | HNH endonuclease | - |
| N5932_RS24945 (5024824) | 5024824..5025051 | + | 228 | WP_000095736.1 | YlcI/YnfO family protein | - |
| N5932_RS24950 (5025476) | 5025476..5025661 | - | 186 | WP_012816791.1 | Rz1 family lipoprotein | - |
| N5932_RS24955 (5025919) | 5025919..5026035 | - | 117 | WP_000539789.1 | hypothetical protein | - |
| N5932_RS24960 (5026035) | 5026035..5026604 | - | 570 | WP_261577639.1 | phage antirepressor N-terminal domain-containing protein | - |
| N5932_RS24965 (5026875) | 5026875..5027408 | - | 534 | WP_000992137.1 | lysozyme | - |
| N5932_RS24970 (5027459) | 5027459..5027803 | - | 345 | WP_000731241.1 | YdfR family protein | - |
| N5932_RS24975 (5027808) | 5027808..5028023 | - | 216 | WP_024180155.1 | class II holin family protein | - |
| N5932_RS24980 (5028463) | 5028463..5030313 | - | 1851 | WP_000023202.1 | SASA family carbohydrate esterase | - |
| N5932_RS24985 (5030290) | 5030290..5030433 | + | 144 | Protein_4869 | hypothetical protein | - |
| N5932_RS24990 (5030628) | 5030628..5030795 | - | 168 | WP_000216653.1 | DUF3927 family protein | - |
| N5932_RS24995 (5030792) | 5030792..5031220 | - | 429 | WP_001303509.1 | tellurite resistance protein | - |
| N5932_RS25015 (5031859) | 5031859..5032548 | - | 690 | WP_001059381.1 | bacteriophage antitermination protein Q | - |
| N5932_RS25020 (5032545) | 5032545..5032904 | - | 360 | WP_001217455.1 | RusA family crossover junction endodeoxyribonuclease | - |
| N5932_RS25025 (5032917) | 5032917..5033966 | - | 1050 | WP_001265161.1 | DUF968 domain-containing protein | - |
| N5932_RS25030 (5033968) | 5033968..5034246 | - | 279 | WP_012779366.1 | hypothetical protein | - |
| N5932_RS25035 (5034414) | 5034414..5034569 | - | 156 | WP_001303917.1 | type I toxin-antitoxin system toxin HokD | - |
| N5932_RS25040 (5034815) | 5034815..5034919 | - | 105 | WP_001278450.1 | hypothetical protein | - |
| N5932_RS25045 (5035034) | 5035034..5035618 | - | 585 | WP_000206793.1 | DUF551 domain-containing protein | - |
| N5932_RS25050 (5035675) | 5035675..5036070 | - | 396 | WP_001118159.1 | DUF977 family protein | - |
| N5932_RS25055 (5036086) | 5036086..5036855 | - | 770 | Protein_4880 | DUF1627 domain-containing protein | - |
| N5932_RS25060 (5036881) | 5036881..5037621 | - | 741 | WP_000788938.1 | ATP-binding protein | - |
| N5932_RS25065 (5037628) | 5037628..5038590 | - | 963 | WP_000095669.1 | helix-turn-helix domain-containing protein | - |
| N5932_RS25070 (5038613) | 5038613..5039038 | - | 426 | WP_000693943.1 | toxin YdaT family protein | - |
| N5932_RS25075 (5039035) | 5039035..5039337 | - | 303 | WP_000172738.1 | transcriptional regulator | - |
| N5932_RS25080 (5039435) | 5039435..5039806 | + | 372 | WP_001169686.1 | hypothetical protein | - |
| N5932_RS25085 (5039827) | 5039827..5040018 | + | 192 | WP_001302048.1 | hypothetical protein | Antitoxin Detail |
| N5932_RS25090 (5040020) | 5040020..5040298 | + | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| N5932_RS25095 (5040651) | 5040651..5040950 | + | 300 | WP_001240334.1 | hypothetical protein | - |
| N5932_RS25100 (5041022) | 5041022..5041240 | + | 219 | WP_001171930.1 | protein YdfC | - |
| N5932_RS25105 (5041809) | 5041809..5041997 | + | 189 | WP_000449192.1 | cell division inhibition protein DicB | - |
| N5932_RS25110 (5041994) | 5041994..5042185 | + | 192 | WP_001090200.1 | DUF1482 family protein | - |
| N5932_RS25115 (5042278) | 5042278..5043363 | + | 1086 | Protein_4892 | exonuclease | - |
| N5932_RS25120 (5043414) | 5043414..5044627 | + | 1214 | WP_162829202.1 | IS3 family transposase IS1203 | Transposase |
| N5932_RS25125 (5044668) | 5044668..5046062 | + | 1395 | Protein_4894 | 3'-5' exoribonuclease | - |
| N5932_RS25130 (5046135) | 5046135..5046386 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| N5932_RS25135 (5046421) | 5046421..5047103 | + | 683 | Protein_4896 | DUF3596 domain-containing protein | - |
| N5932_RS25140 (5047083) | 5047083..5047169 | - | 87 | Protein_4897 | hypothetical protein | - |
| N5932_RS25145 (5047375) | 5047375..5047701 | - | 327 | WP_001302046.1 | YnfA family protein | - |
| N5932_RS25150 (5047836) | 5047836..5048177 | + | 342 | WP_000705189.1 | DUF1283 family protein | - |
| N5932_RS25155 (5048212) | 5048212..5048772 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| N5932_RS25160 (5048775) | 5048775..5049485 | - | 711 | WP_001303515.1 | YnfC family lipoprotein | - |
| N5932_RS25165 (5049593) | 5049593..5049898 | + | 306 | WP_000778147.1 | DUF1161 domain-containing protein | - |
| N5932_RS25170 (5050097) | 5050097..5052523 | + | 2427 | WP_000041704.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|