MGE detailed information
MGE type: Genomic_island MGE length: 63804 bp
Accession: NZ_CP104472 Location: 3414182..3477985 Organism: Escherichia coli strain UC4224 Replicon: chromosome
Accession: NZ_CP104472 Location: 3414182..3477985 Organism: Escherichia coli strain UC4224 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4S17_RS16455 (3409785) | 3409785..3410435 | + | 651 | WP_000993925.1 | IS66-like element accessory protein TnpA | - |
| N4S17_RS16460 (3410435) | 3410435..3410782 | + | 348 | WP_000623562.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| N4S17_RS16465 (3410802) | 3410802..3411785 | + | 984 | Protein_3211 | IS66 family transposase | - |
| N4S17_RS16470 (3411799) | 3411799..3412704 | - | 906 | Protein_3212 | IS3-like element ISEc31 family transposase | - |
| N4S17_RS16475 (3412692) | 3412692..3412772 | + | 81 | Protein_3213 | hypothetical protein | - |
| N4S17_RS16480 (3412769) | 3412769..3413920 | + | 1152 | WP_198458865.1 | IS30-like element IS30 family transposase | - |
| N4S17_RS16485 (3413930) | 3413930..3414835 | + | 906 | Protein_3215 | IS3 family transposase ISLad1 | Transposase |
| N4S17_RS16490 (3414918) | 3414918..3415175 | + | 258 | WP_000177057.1 | hypothetical protein | - |
| N4S17_RS16495 (3415733) | 3415733..3416500 | - | 768 | WP_000175457.1 | Fe(3+) dicitrate transport ATP-binding protein FecE | VF |
| N4S17_RS16500 (3416501) | 3416501..3417457 | - | 957 | WP_000684856.1 | Fe(3+) dicitrate transport system permease protein FecD | VF |
| N4S17_RS16505 (3417454) | 3417454..3418452 | - | 999 | WP_000125182.1 | Fe(3+) dicitrate transport system permease protein FecC | VF |
| N4S17_RS16510 (3418449) | 3418449..3419351 | - | 903 | WP_000879160.1 | Fe(3+) dicitrate ABC transporter substrate-binding protein FecB | - |
| N4S17_RS16515 (3419396) | 3419396..3421720 | - | 2325 | WP_000188255.1 | TonB-dependent Fe(3+) dicitrate receptor FecA | - |
| N4S17_RS16520 (3421807) | 3421807..3422760 | - | 954 | WP_001068910.1 | ferric citrate uptake sigma factor regulator FecR | - |
| N4S17_RS16525 (3422757) | 3422757..3423278 | - | 522 | WP_001283626.1 | putative RNA polymerase sigma factor FecI | VF |
| N4S17_RS16530 (3423415) | 3423415..3423483 | + | 69 | WP_211180522.1 | protein YkiE | - |
| N4S17_RS16535 (3423570) | 3423570..3424267 | + | 698 | Protein_3225 | IS1 family transposase | - |
| N4S17_RS16540 (3424409) | 3424409..3425581 | + | 1173 | Protein_3226 | IS3 family transposase | - |
| N4S17_RS16545 (3425732) | 3425732..3426964 | + | 1233 | WP_000271620.1 | dNTP triphosphohydrolase | - |
| N4S17_RS16550 (3427065) | 3427065..3427634 | + | 570 | WP_021544584.1 | hypothetical protein | - |
| N4S17_RS16555 (3428051) | 3428051..3428485 | - | 435 | WP_000038249.1 | H-NS family nucleoid-associated regulatory protein | - |
| N4S17_RS16560 (3428899) | 3428899..3429072 | - | 174 | WP_153274857.1 | hypothetical protein | - |
| N4S17_RS16565 (3429208) | 3429208..3429381 | + | 174 | WP_000258195.1 | hypothetical protein | - |
| N4S17_RS16570 (3429378) | 3429378..3429722 | + | 345 | Protein_3232 | ProQ/FinO family protein | - |
| N4S17_RS16575 (3429741) | 3429741..3430289 | - | 549 | WP_001167422.1 | hypothetical protein | - |
| N4S17_RS16580 (3430377) | 3430377..3430535 | - | 159 | WP_000831911.1 | hypothetical protein | - |
| N4S17_RS16585 (3430532) | 3430532..3430768 | - | 237 | WP_000958149.1 | AlpA family transcriptional regulator | - |
| N4S17_RS16590 (3430837) | 3430837..3431412 | - | 576 | WP_028985516.1 | hypothetical protein | - |
| N4S17_RS16595 (3431659) | 3431659..3432225 | - | 567 | WP_001126811.1 | inovirus-type Gp2 protein | - |
| N4S17_RS16600 (3433643) | 3433643..3433792 | - | 150 | Protein_3238 | IS481 family transposase ISKpn28 | Transposase |
| N4S17_RS16605 (3433847) | 3433847..3434448 | - | 602 | Protein_3239 | IS481 family transposase ISKpn28 | Transposase |
| N4S17_RS16610 (3434877) | 3434877..3435329 | - | 453 | WP_001100706.1 | dTDP-3-amino-3,6-dideoxy-alpha-D-galactopyranose 3-N-acetyltransferase | VF |
| N4S17_RS16615 (3435839) | 3435839..3436570 | - | 732 | WP_001075462.1 | inovirus Gp2 family protein | - |
| N4S17_RS16620 (3436750) | 3436750..3436923 | + | 174 | WP_001499034.1 | hypothetical protein | - |
| N4S17_RS16625 (3438615) | 3438615..3439469 | + | 855 | WP_000110727.1 | hypothetical protein | - |
| N4S17_RS16630 (3439466) | 3439466..3440428 | - | 963 | WP_000126799.1 | hypothetical protein | - |
| N4S17_RS16635 (3440534) | 3440534..3441418 | + | 885 | WP_000010383.1 | 50S ribosome-binding GTPase | - |
| N4S17_RS16640 (3441621) | 3441621..3442301 | + | 681 | WP_001282921.1 | WYL domain-containing protein | - |
| N4S17_RS16645 (3442449) | 3442449..3443126 | + | 678 | WP_001097301.1 | hypothetical protein | - |
| N4S17_RS16650 (3443132) | 3443132..3443365 | + | 234 | WP_001278293.1 | DUF905 family protein | - |
| N4S17_RS16655 (3443455) | 3443455..3444273 | + | 819 | WP_001175165.1 | DUF932 domain-containing protein | - |
| N4S17_RS16660 (3444299) | 3444299..3444439 | - | 141 | WP_000997937.1 | hypothetical protein | - |
| N4S17_RS16665 (3444539) | 3444539..3445018 | + | 480 | WP_000706980.1 | antirestriction protein | - |
| N4S17_RS16670 (3445033) | 3445033..3445509 | + | 477 | WP_021544587.1 | RadC family protein | - |
| N4S17_RS16675 (3445596) | 3445596..3445817 | + | 222 | WP_000692350.1 | DUF987 domain-containing protein | - |
| N4S17_RS16680 (3445897) | 3445897..3446271 | + | 375 | WP_001285608.1 | type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA | Antitoxin Detail |
| N4S17_RS16685 (3446318) | 3446318..3446695 | + | 378 | WP_000854919.1 | TA system toxin CbtA family protein | Toxin Detail |
| N4S17_RS16690 (3446692) | 3446692..3447180 | + | 489 | WP_000777664.1 | DUF5983 family protein | - |
| N4S17_RS16695 (3447200) | 3447200..3447397 | + | 198 | WP_001327226.1 | DUF957 domain-containing protein | - |
| N4S17_RS16700 (3447482) | 3447482..3447625 | + | 144 | Protein_3258 | hypothetical protein | - |
| N4S17_RS16705 (3448090) | 3448090..3449355 | + | 1266 | WP_001218329.1 | Prophage integrase IntA ; Integrase | Integrase |
| N4S17_RS16710 (3449556) | 3449556..3451025 | - | 1470 | WP_028985242.1 | Serine/threonine-protein kinase PknD | VF |
| N4S17_RS16715 (3451022) | 3451022..3451564 | - | 543 | WP_001115385.1 | hypothetical protein | - |
| N4S17_RS16720 (3451572) | 3451572..3453257 | - | 1686 | WP_000323666.1 | ATP-binding protein | - |
| N4S17_RS16725 (3453247) | 3453247..3454404 | - | 1158 | WP_028985241.1 | hypothetical protein | - |
| N4S17_RS16730 (3454407) | 3454407..3455255 | - | 849 | WP_028985240.1 | hypothetical protein | - |
| N4S17_RS16735 (3455266) | 3455266..3459552 | - | 4287 | WP_028985239.1 | hypothetical protein | - |
| N4S17_RS16740 (3459549) | 3459549..3460835 | - | 1287 | WP_000377418.1 | hypothetical protein | - |
| N4S17_RS16745 (3460853) | 3460853..3462325 | - | 1473 | WP_028985238.1 | restriction endonuclease subunit S | - |
| N4S17_RS16750 (3462325) | 3462325..3464472 | - | 2148 | WP_001040176.1 | N-6 DNA methylase | - |
| N4S17_RS16755 (3464523) | 3464523..3464909 | - | 387 | WP_000148644.1 | hypothetical protein | - |
| N4S17_RS16760 (3464906) | 3464906..3466249 | - | 1344 | WP_000504877.1 | McrC family protein | - |
| N4S17_RS16765 (3466242) | 3466242..3468317 | - | 2076 | WP_000177023.1 | AAA family ATPase | - |
| N4S17_RS16770 (3468487) | 3468487..3469359 | - | 873 | WP_000168592.1 | HNH endonuclease | - |
| N4S17_RS16775 (3469459) | 3469459..3469563 | + | 105 | Protein_3273 | HNH endonuclease | - |
| N4S17_RS16780 (3469571) | 3469571..3470551 | - | 981 | WP_028985237.1 | sialate O-acetylesterase | - |
| N4S17_RS16785 (3470616) | 3470616..3471722 | - | 1107 | WP_001044128.1 | N-acetylneuraminate epimerase | - |
| N4S17_RS16790 (3471742) | 3471742..3472458 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| N4S17_RS16795 (3473915) | 3473915..3474517 | + | 603 | WP_000790583.1 | ISKra4 family transposase ISCep1 | VF |
| N4S17_RS16800 (3474995) | 3474995..3475591 | + | 597 | WP_000044711.1 | ISKra4 family transposase ISCep1 | VF |
| N4S17_RS16805 (3476071) | 3476071..3476619 | + | 549 | WP_000695543.1 | Fimbrial subunit type 1 | VF |
| N4S17_RS16810 (3476684) | 3476684..3477223 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| N4S17_RS16815 (3477260) | 3477260..3477985 | + | 726 | WP_000066573.1 | Chaperone protein FimC | VF |
| N4S17_RS16820 (3478052) | 3478052..3480688 | + | 2637 | WP_000121021.1 | fimbrial usher FimD | - |
| N4S17_RS16825 (3480698) | 3480698..3481228 | + | 531 | WP_001244823.1 | type 1 fimbria minor subunit FimF | - |
| N4S17_RS16830 (3481241) | 3481241..3481744 | + | 504 | WP_000872004.1 | type 1 fimbria minor subunit FimG | - |
| N4S17_RS16835 (3481764) | 3481764..3482666 | + | 903 | WP_198458786.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|