MGE detailed information
MGE type: Prophage MGE length: 60880 bp
Accession: NZ_CP104114 Location: 2382524..2443403 Organism: Escherichia coli strain USDA-ARS-USMARC-51408 Replicon: chromosome
Accession: NZ_CP104114 Location: 2382524..2443403 Organism: Escherichia coli strain USDA-ARS-USMARC-51408 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N1706_RS11400 (2379039) | 2379039..2379785 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| N1706_RS11405 (2379874) | 2379874..2380560 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| N1706_RS11410 (2380737) | 2380737..2380940 | + | 204 | WP_073503318.1 | putative selenium delivery protein YdfZ | - |
| N1706_RS11415 (2380975) | 2380975..2382435 | - | 1461 | WP_000527809.1 | mannitol dehydrogenase family protein | - |
| N1706_RS11420 (2382524) | 2382524..2383891 | - | 1368 | Protein_2212 | MHS family MFS transporter | - |
| N1706_RS11425 (2384412) | 2384412..2384525 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| N1706_RS11430 (2384594) | 2384594..2384827 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| N1706_RS11435 (2385144) | 2385144..2385734 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| N1706_RS11440 (2385832) | 2385832..2386407 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| N1706_RS11445 (2386407) | 2386407..2389481 | - | 3075 | WP_260223107.1 | prophage tail fiber N-terminal domain-containing protein | - |
| N1706_RS11450 (2389546) | 2389546..2390145 | - | 600 | WP_001695589.1 | Outer membrane protein X | VF |
| N1706_RS11455 (2390216) | 2390216..2393713 | - | 3498 | WP_097733657.1 | host specificity protein J | - |
| N1706_RS11460 (2393774) | 2393774..2394346 | - | 573 | WP_001760725.1 | tail assembly protein | - |
| N1706_RS11465 (2394343) | 2394343..2395086 | - | 744 | WP_089601540.1 | C40 family peptidase | - |
| N1706_RS11470 (2395092) | 2395092..2395790 | - | 699 | WP_089624298.1 | phage minor tail protein L | - |
| N1706_RS11475 (2395790) | 2395790..2396119 | - | 330 | WP_000847379.1 | phage tail protein | - |
| N1706_RS11480 (2396116) | 2396116..2398677 | - | 2562 | WP_097292741.1 | phage tail tape measure protein | - |
| N1706_RS11485 (2398670) | 2398670..2399104 | - | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| N1706_RS11490 (2399086) | 2399086..2399508 | - | 423 | WP_000479153.1 | phage minor tail protein G | - |
| N1706_RS11495 (2399524) | 2399524..2400264 | - | 741 | WP_001564531.1 | phage tail protein | - |
| N1706_RS11500 (2400272) | 2400272..2400667 | - | 396 | WP_000683105.1 | phage minor tail U family protein | - |
| N1706_RS11505 (2400664) | 2400664..2401242 | - | 579 | WP_000985116.1 | phage tail protein | - |
| N1706_RS11510 (2401254) | 2401254..2401607 | - | 354 | WP_000752986.1 | head-tail joining protein | - |
| N1706_RS11515 (2401619) | 2401619..2402014 | - | 396 | WP_000158868.1 | DNA-packaging protein FI | - |
| N1706_RS11520 (2402056) | 2402056..2403081 | - | 1026 | WP_000063217.1 | major capsid protein | - |
| N1706_RS11525 (2403137) | 2403137..2403469 | - | 333 | WP_001513196.1 | head decoration protein | - |
| N1706_RS11530 (2403479) | 2403479..2404798 | - | 1320 | WP_000123272.1 | S49 family peptidase | - |
| N1706_RS11535 (2404779) | 2404779..2406380 | - | 1602 | WP_016235295.1 | phage portal protein | - |
| N1706_RS11540 (2406377) | 2406377..2406583 | - | 207 | WP_000198149.1 | gpW family protein | - |
| N1706_RS11545 (2406580) | 2406580..2408505 | - | 1926 | WP_001027259.1 | phage terminase large subunit family protein | - |
| N1706_RS11550 (2408480) | 2408480..2409025 | - | 546 | WP_000453611.1 | DNA-packaging protein | - |
| N1706_RS11555 (2409414) | 2409414..2409647 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| N1706_RS11560 (2409705) | 2409705..2410115 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| N1706_RS11565 (2410267) | 2410267..2410440 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| N1706_RS11570 (2410612) | 2410612..2410767 | - | 156 | WP_001309517.1 | protein YnfN | - |
| N1706_RS11575 (2410847) | 2410847..2410912 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| N1706_RS11580 (2410915) | 2410915..2411103 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| N1706_RS11585 (2411114) | 2411114..2411326 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| N1706_RS11590 (2411689) | 2411689..2412186 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| N1706_RS11595 (2412183) | 2412183..2412716 | - | 534 | WP_001092971.1 | lysozyme | - |
| N1706_RS11600 (2412713) | 2412713..2413024 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| N1706_RS11605 (2413029) | 2413029..2413244 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| N1706_RS11610 (2413464) | 2413464..2413634 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| N1706_RS11615 (2413998) | 2413998..2414213 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| N1706_RS11620 (2414514) | 2414514..2414726 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| N1706_RS11625 (2414781) | 2414781..2414870 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| N1706_RS11630 (2415148) | 2415148..2415900 | - | 753 | WP_001047135.1 | antitermination protein | - |
| N1706_RS11635 (2415914) | 2415914..2416963 | - | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| N1706_RS11640 (2416965) | 2416965..2417243 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| N1706_RS11645 (2417310) | 2417310..2417561 | - | 252 | WP_000980994.1 | protein Rem | - |
| N1706_RS11650 (2417778) | 2417778..2417933 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| N1706_RS11655 (2418005) | 2418005..2418292 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| N1706_RS11660 (2418292) | 2418292..2418531 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| N1706_RS11665 (2418556) | 2418556..2418861 | + | 306 | WP_001326990.1 | protein YdfV | - |
| N1706_RS11670 (2419064) | 2419064..2419396 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| N1706_RS11675 (2419833) | 2419833..2419982 | - | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| N1706_RS11680 (2420055) | 2420055..2421125 | - | 1071 | Protein_2264 | ISNCY family transposase ISCARN112 | Transposase |
| N1706_RS11685 (2421915) | 2421915..2422202 | - | 288 | Protein_2265 | hypothetical protein | - |
| N1706_RS11690 (2422680) | 2422680..2423169 | - | 490 | Protein_2266 | class I SAM-dependent methyltransferase | - |
| N1706_RS11695 (2423166) | 2423166..2423588 | - | 423 | WP_001151262.1 | DUF977 family protein | - |
| N1706_RS11700 (2423629) | 2423629..2424594 | - | 966 | WP_000054512.1 | hypothetical protein | - |
| N1706_RS11705 (2424575) | 2424575..2425096 | - | 522 | WP_000705358.1 | toxin YdaT family protein | - |
| N1706_RS11710 (2425080) | 2425080..2425310 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| N1706_RS11715 (2425394) | 2425394..2425801 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| N1706_RS11720 (2425968) | 2425968..2426123 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| N1706_RS11725 (2426125) | 2426125..2426253 | + | 129 | WP_000344964.1 | protein YdfB | - |
| N1706_RS11730 (2426283) | 2426283..2426501 | + | 219 | WP_001171942.1 | protein YdfC | - |
| N1706_RS11735 (2427069) | 2427069..2427257 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| N1706_RS11740 (2427254) | 2427254..2427445 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| N1706_RS11745 (2427538) | 2427538..2430009 | + | 2472 | WP_000048342.1 | exonuclease | - |
| N1706_RS11750 (2430082) | 2430082..2430333 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| N1706_RS11755 (2430368) | 2430368..2431648 | + | 1281 | WP_000876958.1 | Putative defective protein IntQ ; Integrase | Integrase |
| N1706_RS11760 (2431836) | 2431836..2432855 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| N1706_RS11765 (2432867) | 2432867..2434081 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| N1706_RS11770 (2434287) | 2434287..2434613 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| N1706_RS11775 (2434748) | 2434748..2435089 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| N1706_RS11780 (2435124) | 2435124..2435684 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| N1706_RS11785 (2435687) | 2435687..2436397 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| N1706_RS11790 (2436505) | 2436505..2436810 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| N1706_RS11795 (2437009) | 2437009..2439435 | + | 2427 | WP_260223114.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| N1706_RS11800 (2439496) | 2439496..2441919 | + | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| N1706_RS11805 (2441930) | 2441930..2442547 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| N1706_RS11810 (2442549) | 2442549..2443403 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| N1706_RS11815 (2443446) | 2443446..2444060 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| N1706_RS11820 (2444219) | 2444219..2445511 | + | 1293 | WP_260223115.1 | voltage-gated ClC-type chloride channel ClcB | - |
| N1706_RS11825 (2445464) | 2445464..2446159 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| N1706_RS11830 (2446284) | 2446284..2447504 | - | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|