MGE detailed information
MGE type: Genomic_island MGE length: 68437 bp
Accession: NZ_CP102675 Location: 3583749..3652185 Organism: Escherichia coli strain XH987 Replicon: chromosome
Accession: NZ_CP102675 Location: 3583749..3652185 Organism: Escherichia coli strain XH987 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NU950_RS19400 (3578985) | 3578985..3579707 | + | 723 | Protein_3407 | Accessory colonization factor AcfD | - |
| NU950_RS19405 (3579694) | 3579694..3580143 | + | 450 | Protein_3408 | type II secretion system protein GspC | - |
| NU950_RS19410 (3580173) | 3580173..3580955 | + | 783 | Protein_3409 | hypothetical protein | - |
| NU950_RS19415 (3580948) | 3580948..3581298 | + | 351 | Protein_3410 | general secretion pathway protein GspK | - |
| NU950_RS19420 (3581295) | 3581295..3582473 | + | 1179 | WP_000094974.1 | type II secretion system protein GspL | - |
| NU950_RS19425 (3582475) | 3582475..3583011 | + | 537 | WP_000942795.1 | GspM family type II secretion system protein YghD | - |
| NU950_RS19430 (3583426) | 3583426..3583752 | - | 327 | WP_000779483.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| NU950_RS19435 (3583749) | 3583749..3584012 | - | 264 | WP_025492088.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| NU950_RS19440 (3584084) | 3584084..3584950 | - | 867 | WP_032153714.1 | DUF4942 domain-containing protein | - |
| NU950_RS19445 (3585035) | 3585035..3585232 | - | 198 | WP_000839265.1 | DUF957 domain-containing protein | - |
| NU950_RS19450 (3585244) | 3585244..3585735 | - | 492 | WP_023155722.1 | DUF5983 family protein | - |
| NU950_RS19455 (3585732) | 3585732..3586109 | - | 378 | WP_000854735.1 | TA system toxin CbtA family protein | Toxin Detail |
| NU950_RS19460 (3586156) | 3586156..3586530 | - | 375 | WP_032153712.1 | type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA | Antitoxin Detail |
| NU950_RS19465 (3586610) | 3586610..3586831 | - | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| NU950_RS19470 (3586900) | 3586900..3587376 | - | 477 | WP_001186715.1 | RadC family protein | - |
| NU950_RS19475 (3587392) | 3587392..3587877 | - | 486 | WP_032153711.1 | antirestriction protein | - |
| NU950_RS19480 (3587969) | 3587969..3588787 | - | 819 | WP_001234693.1 | DUF932 domain-containing protein | - |
| NU950_RS19485 (3588878) | 3588878..3589087 | - | 210 | WP_023155727.1 | DUF905 family protein | - |
| NU950_RS19490 (3589117) | 3589117..3589794 | - | 678 | WP_023155728.1 | hypothetical protein | - |
| NU950_RS19495 (3589913) | 3589913..3590797 | - | 885 | WP_024166630.1 | 50S ribosome-binding GTPase | - |
| NU950_RS19500 (3590904) | 3590904..3591836 | + | 933 | WP_023155730.1 | hypothetical protein | - |
| NU950_RS19505 (3592154) | 3592154..3593382 | + | 1229 | WP_166738926.1 | IS3 family transposase IS2 | Transposase |
| NU950_RS19510 (3593307) | 3593307..3593978 | - | 672 | WP_077251303.1 | hypothetical protein | - |
| NU950_RS19515 (3595729) | 3595729..3596460 | + | 732 | WP_032153707.1 | inovirus Gp2 family protein | - |
| NU950_RS19520 (3596554) | 3596554..3596709 | - | 156 | WP_020923993.1 | hypothetical protein | - |
| NU950_RS19525 (3596733) | 3596733..3596993 | + | 261 | WP_223362175.1 | hypothetical protein | - |
| NU950_RS19530 (3597005) | 3597005..3597211 | - | 207 | WP_025492114.1 | hypothetical protein | - |
| NU950_RS19535 (3597645) | 3597645..3599249 | + | 1605 | WP_001067608.1 | YfjI family protein | - |
| NU950_RS19540 (3600846) | 3600846..3601412 | + | 567 | WP_032153705.1 | inovirus-type Gp2 protein | - |
| NU950_RS19545 (3601532) | 3601532..3601681 | - | 150 | WP_001421645.1 | hypothetical protein | - |
| NU950_RS19550 (3601696) | 3601696..3602268 | + | 573 | WP_032153703.1 | hypothetical protein | - |
| NU950_RS19555 (3602337) | 3602337..3602573 | + | 237 | WP_000958154.1 | AlpA family transcriptional regulator | - |
| NU950_RS19560 (3602842) | 3602842..3603390 | + | 549 | WP_032153702.1 | hypothetical protein | - |
| NU950_RS19565 (3603409) | 3603409..3603657 | - | 249 | WP_001349534.1 | ProQ/FINO family protein | - |
| NU950_RS19570 (3603726) | 3603726..3603917 | - | 192 | WP_001323513.1 | hypothetical protein | - |
| NU950_RS19575 (3604320) | 3604320..3605011 | - | 692 | Protein_3442 | IS1 family transposase | - |
| NU950_RS19580 (3605071) | 3605071..3605247 | + | 177 | Protein_3443 | transketolase family protein | - |
| NU950_RS19585 (3605436) | 3605436..3605611 | + | 176 | Protein_3444 | transposase | - |
| NU950_RS19590 (3606474) | 3606474..3607040 | + | 567 | WP_000919994.1 | hypothetical protein | - |
| NU950_RS19595 (3607281) | 3607281..3608096 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| NU950_RS19600 (3608157) | 3608157..3608960 | + | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| NU950_RS19605 (3608960) | 3608960..3609796 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| NU950_RS19610 (3610102) | 3610102..3610344 | + | 243 | WP_000844627.1 | transposase | - |
| NU950_RS19615 (3610376) | 3610376..3611026 | - | 651 | WP_001493764.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| NU950_RS19620 (3611132) | 3611132..3612328 | + | 1197 | Protein_3451 | tetracycline efflux MFS transporter Tet(A) | - |
| NU950_RS19625 (3612295) | 3612295..3612483 | - | 189 | Protein_3452 | IS91 family transposase | - |
| NU950_RS19630 (3612595) | 3612595..3612900 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator HdfR | VF |
| NU950_RS19635 (3612928) | 3612928..3614142 | - | 1215 | WP_023300759.1 | Bicyclomycin resistance protein | ARG |
| NU950_RS19640 (3614359) | 3614359..3615243 | - | 885 | WP_021598067.1 | DUF3363 domain-containing protein | - |
| NU950_RS19645 (3615274) | 3615274..3615930 | - | 657 | Protein_3456 | IS91-like element ISVsa3 family transposase | - |
| NU950_RS19650 (3615864) | 3615864..3616142 | - | 279 | WP_001349530.1 | P fimbrial regulatory protein KS71A | VF |
| NU950_RS19655 (3616565) | 3616565..3616879 | + | 315 | WP_000930062.1 | Major pilu subunit operon regulatory protein PapB | VF |
| NU950_RS19660 (3617086) | 3617086..3617349 | + | 264 | Protein_3459 | hypothetical protein | VF |
| NU950_RS19665 (3617745) | 3617745..3618977 | - | 1233 | WP_000271619.1 | dNTP triphosphohydrolase | - |
| NU950_RS19670 (3619128) | 3619128..3620289 | - | 1162 | Protein_3461 | IS3 family transposase IS3 | Transposase |
| NU950_RS19675 (3620457) | 3620457..3621437 | + | 981 | WP_000174035.1 | thymidylate synthase | - |
| NU950_RS19680 (3621434) | 3621434..3622378 | + | 945 | WP_000820616.1 | hypothetical protein | - |
| NU950_RS19685 (3622381) | 3622381..3623463 | - | 1083 | WP_000637419.1 | XRE family transcriptional regulator | - |
| NU950_RS19690 (3623930) | 3623930..3624196 | + | 267 | WP_032153698.1 | MazG-like family protein | - |
| NU950_RS19695 (3624496) | 3624496..3625010 | - | 515 | Protein_3466 | ISL3 family transposase ISEc38 | Transposase |
| NU950_RS19700 (3625618) | 3625618..3629031 | + | 3414 | WP_000438165.1 | DEAD/DEAH box helicase family protein | - |
| NU950_RS19705 (3629095) | 3629095..3630729 | + | 1635 | WP_000627728.1 | class I SAM-dependent DNA methyltransferase | - |
| NU950_RS19710 (3630726) | 3630726..3631868 | + | 1143 | WP_000742120.1 | restriction endonuclease subunit S | - |
| NU950_RS19715 (3631877) | 3631877..3633499 | + | 1623 | WP_000778955.1 | AAA family ATPase | - |
| NU950_RS19720 (3633499) | 3633499..3634395 | + | 897 | WP_000499115.1 | hypothetical protein | - |
| NU950_RS19725 (3634618) | 3634618..3634796 | - | 179 | Protein_3472 | integrase | - |
| NU950_RS19730 (3635026) | 3635026..3635763 | + | 738 | WP_001398114.1 | OmpW family outer membrane protein | - |
| NU950_RS19735 (3636183) | 3636183..3637079 | + | 897 | WP_000228490.1 | WYL domain-containing protein | - |
| NU950_RS19740 (3637128) | 3637128..3638207 | + | 1080 | WP_001207396.1 | hypothetical protein | - |
| NU950_RS19745 (3638254) | 3638254..3639825 | + | 1572 | WP_001100182.1 | ATP--cob(I)alamin adenosyltransferase | - |
| NU950_RS19750 (3639822) | 3639822..3640088 | + | 267 | WP_000766274.1 | YkgJ family cysteine cluster protein | - |
| NU950_RS19755 (3640228) | 3640228..3640425 | + | 198 | WP_001238004.1 | hypothetical protein | - |
| NU950_RS19760 (3640478) | 3640478..3642151 | + | 1674 | WP_025492097.1 | sulfatase-like hydrolase/transferase | - |
| NU950_RS19765 (3642295) | 3642295..3643329 | - | 1035 | WP_032153697.1 | tetratricopeptide repeat family protein | - |
| NU950_RS19770 (3643379) | 3643379..3643654 | + | 276 | WP_023181049.1 | IS1 family transposase IS1A | Transposase |
| NU950_RS19775 (3643573) | 3643573..3644016 | + | 444 | WP_021547728.1 | IS3 family transposase IS2 | Transposase |
| NU950_RS19780 (3644594) | 3644594..3645988 | - | 1395 | WP_001037798.1 | carbohydrate porin | - |
| NU950_RS19785 (3646183) | 3646183..3647616 | - | 1434 | WP_258383342.1 | glycoside hydrolase family 32 protein | - |
| NU950_RS19790 (3647613) | 3647613..3648890 | - | 1278 | WP_001083368.1 | MFS transporter | - |
| NU950_RS19795 (3648953) | 3648953..3651079 | - | 2127 | WP_000253907.1 | alpha-galactosidase | - |
| NU950_RS19800 (3651175) | 3651175..3652185 | - | 1011 | WP_000053331.1 | substrate-binding domain-containing protein | - |
| NU950_RS19805 (3652335) | 3652335..3653519 | - | 1185 | WP_001218742.1 | tyrosine-type recombinase/integrase | - |
| NU950_RS19815 (3653877) | 3653877..3654584 | - | 708 | WP_000234522.1 | DUF554 domain-containing protein | - |
| NU950_RS19820 (3654737) | 3654737..3654820 | + | 84 | WP_212591416.1 | hypothetical protein | - |
| NU950_RS19825 (3654982) | 3654982..3657117 | + | 2136 | WP_000839746.1 | ornithine decarboxylase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|