MGE detailed information
MGE type: Prophage MGE length: 32640 bp
Accession: NZ_CP102378 Location: 1634741..1667380 Organism: Escherichia coli strain JB41 Replicon: chromosome
Accession: NZ_CP102378 Location: 1634741..1667380 Organism: Escherichia coli strain JB41 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NR351_RS07975 (1629756) | 1629756..1630190 | + | 435 | WP_000843414.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
| NR351_RS07980 (1630210) | 1630210..1630593 | + | 384 | WP_000091199.1 | MDR efflux pump AcrAB transcriptional activator MarA | - |
| NR351_RS07985 (1630625) | 1630625..1630843 | + | 219 | WP_000803657.1 | multiple antibiotic resistance protein MarB | - |
| NR351_RS07990 (1630874) | 1630874..1631773 | - | 900 | WP_000087187.1 | O-acetylserine/cysteine exporter | - |
| NR351_RS07995 (1631968) | 1631968..1633155 | + | 1188 | WP_001054204.1 | efflux MFS transporter YdeE | - |
| NR351_RS08000 (1633282) | 1633282..1633377 | + | 96 | WP_000901367.1 | protein MgtS | - |
| NR351_RS08005 (1633377) | 1633377..1633481 | + | 105 | WP_211180496.1 | protein MgtT | - |
| NR351_RS08010 (1633596) | 1633596..1634486 | - | 891 | WP_000592814.1 | diguanylate cyclase DgcZ | - |
| NR351_RS08015 (1634741) | 1634741..1635133 | - | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| NR351_RS08020 (1635409) | 1635409..1635927 | + | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| NR351_RS08025 (1635971) | 1635971..1638016 | - | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| NR351_RS08030 (1638153) | 1638153..1638899 | + | 747 | WP_000636571.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| NR351_RS08035 (1638988) | 1638988..1639674 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| NR351_RS08040 (1639851) | 1639851..1640054 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| NR351_RS08045 (1640089) | 1640089..1641549 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| NR351_RS08050 (1641638) | 1641638..1643005 | - | 1368 | Protein_1573 | MHS family MFS transporter | - |
| NR351_RS08055 (1643526) | 1643526..1643639 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| NR351_RS08060 (1643708) | 1643708..1643941 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| NR351_RS08065 (1644258) | 1644258..1644848 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| NR351_RS08070 (1644946) | 1644946..1645521 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| NR351_RS08075 (1645521) | 1645521..1646483 | - | 963 | WP_001027733.1 | phage tail protein | - |
| NR351_RS08080 (1646434) | 1646434..1647003 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| NR351_RS08085 (1647392) | 1647392..1647625 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| NR351_RS08090 (1647683) | 1647683..1648093 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| NR351_RS08095 (1648245) | 1648245..1648418 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| NR351_RS08100 (1648590) | 1648590..1648745 | - | 156 | WP_001309517.1 | protein YnfN | - |
| NR351_RS08105 (1648824) | 1648824..1648889 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| NR351_RS08110 (1648892) | 1648892..1649080 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| NR351_RS08115 (1649091) | 1649091..1649303 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| NR351_RS08120 (1649666) | 1649666..1650163 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| NR351_RS08125 (1650160) | 1650160..1650693 | - | 534 | WP_001092971.1 | lysozyme | - |
| NR351_RS08130 (1650690) | 1650690..1651001 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| NR351_RS08135 (1651006) | 1651006..1651221 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| NR351_RS08140 (1651441) | 1651441..1651611 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| NR351_RS08145 (1651975) | 1651975..1652190 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| NR351_RS08150 (1652491) | 1652491..1652703 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| NR351_RS08155 (1652758) | 1652758..1652847 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| NR351_RS08160 (1653125) | 1653125..1653877 | - | 753 | WP_001047135.1 | antitermination protein | - |
| NR351_RS08165 (1653891) | 1653891..1654940 | - | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| NR351_RS08170 (1654942) | 1654942..1655220 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| NR351_RS08175 (1655287) | 1655287..1655538 | - | 252 | WP_000980994.1 | protein Rem | - |
| NR351_RS08180 (1655755) | 1655755..1655910 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| NR351_RS08185 (1655982) | 1655982..1656269 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| NR351_RS08190 (1656269) | 1656269..1656508 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| NR351_RS08195 (1656533) | 1656533..1656838 | + | 306 | WP_001326990.1 | protein YdfV | - |
| NR351_RS08200 (1657041) | 1657041..1657373 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| NR351_RS08205 (1657810) | 1657810..1657959 | - | 150 | WP_011443592.1 | protein YdfW | - |
| NR351_RS08210 (1657994) | 1657994..1658272 | - | 279 | Protein_1605 | hypothetical protein | - |
| NR351_RS08215 (1658256) | 1658256..1658486 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| NR351_RS08220 (1658570) | 1658570..1658977 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| NR351_RS08225 (1659144) | 1659144..1659299 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| NR351_RS08230 (1659301) | 1659301..1659429 | + | 129 | WP_000344964.1 | protein YdfB | - |
| NR351_RS08235 (1659459) | 1659459..1659677 | + | 219 | WP_001171942.1 | protein YdfC | - |
| NR351_RS08240 (1660245) | 1660245..1660433 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| NR351_RS08245 (1660430) | 1660430..1660621 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| NR351_RS08250 (1660714) | 1660714..1661481 | + | 768 | Protein_1613 | exonuclease | - |
| NR351_RS08255 (1661478) | 1661478..1662173 | + | 696 | Protein_1614 | IS3 family transposase IS2 | Transposase |
| NR351_RS08260 (1662187) | 1662187..1663344 | + | 1158 | Protein_1615 | Putative defective protein IntQ ; Integrase | Integrase |
| NR351_RS08265 (1663532) | 1663532..1664551 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| NR351_RS08270 (1664563) | 1664563..1665777 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| NR351_RS08275 (1665983) | 1665983..1666309 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| NR351_RS08280 (1666444) | 1666444..1666785 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| NR351_RS08285 (1666820) | 1666820..1667380 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| NR351_RS08290 (1667383) | 1667383..1668093 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| NR351_RS08295 (1668201) | 1668201..1668506 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| NR351_RS08300 (1668705) | 1668705..1671131 | + | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.009 |