MGE detailed information
MGE type: Conjugative plasmid MGE length: 63428 bp
Accession: NZ_CP100504 Location: 1..63428 Organism: Escherichia coli strain LH50-c Replicon: plasmid pLH50-c-D
Accession: NZ_CP100504 Location: 1..63428 Organism: Escherichia coli strain LH50-c Replicon: plasmid pLH50-c-D
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NLZ13_RS28780 (1) | 1..858 | + | 858 | WP_021534913.1 | incFII family plasmid replication initiator RepA | - |
| NLZ13_RS28785 (1770) | 1770..1907 | + | 138 | Protein_2 | XRE family transcriptional regulator | - |
| NLZ13_RS28790 (1927) | 1927..2190 | + | 264 | WP_001089474.1 | hypothetical protein | - |
| NLZ13_RS28795 (2180) | 2180..2479 | + | 300 | WP_000119542.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| NLZ13_RS28800 (2837) | 2837..3112 | + | 276 | WP_000877662.1 | bacteriocin immunity protein | - |
| NLZ13_RS28805 (3190) | 3190..4377 | - | 1188 | WP_160348040.1 | MFS transporter | - |
| NLZ13_RS28810 (4434) | 4434..5195 | - | 762 | WP_000020503.1 | Fe(3+) dicitrate transport ATP-binding protein FecE | VF |
| NLZ13_RS28815 (5195) | 5195..6232 | - | 1038 | WP_089620107.1 | Hemin transport system permease protein HmuU | VF |
| NLZ13_RS28820 (6232) | 6232..7230 | - | 999 | WP_134233556.1 | ABC transporter substrate-binding protein | - |
| NLZ13_RS28825 (7380) | 7380..7538 | - | 159 | Protein_10 | integrase core domain-containing protein | - |
| NLZ13_RS28830 (7585) | 7585..7827 | - | 243 | Protein_11 | recombinase family protein | - |
| NLZ13_RS28835 (8085) | 8085..8435 | - | 351 | WP_001414994.1 | plasmid partitioning/stability family protein | - |
| NLZ13_RS28840 (8438) | 8438..9400 | - | 963 | WP_112038050.1 | plasmid segregation protein ParM | - |
| NLZ13_RS28845 (9547) | 9547..9840 | + | 294 | WP_032307475.1 | hypothetical protein | - |
| NLZ13_RS28850 (9935) | 9935..10837 | + | 903 | WP_077763882.1 | DUF1281 domain-containing protein | - |
| NLZ13_RS28855 (10801) | 10801..10896 | + | 96 | Protein_16 | hypothetical protein | - |
| NLZ13_RS28860 (11242) | 11242..11667 | + | 426 | WP_089581319.1 | antirestriction protein | - |
| NLZ13_RS28865 (11714) | 11714..12136 | + | 423 | WP_021534897.1 | DUF1380 family protein | - |
| NLZ13_RS28870 (12133) | 12133..12324 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| NLZ13_RS28875 (12597) | 12597..12821 | - | 225 | WP_001427866.1 | hypothetical protein | - |
| NLZ13_RS28880 (13364) | 13364..13594 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| NLZ13_RS28885 (13646) | 13646..15007 | + | 1362 | WP_112038066.1 | DUF3560 domain-containing protein | - |
| NLZ13_RS28890 (15054) | 15054..15617 | + | 564 | WP_021534895.1 | class I SAM-dependent methyltransferase | - |
| NLZ13_RS28895 (15617) | 15617..15877 | + | 261 | WP_249960395.1 | hypothetical protein | - |
| NLZ13_RS28900 (15769) | 15769..16047 | + | 279 | WP_254539453.1 | hypothetical protein | - |
| NLZ13_RS28905 (16055) | 16055..16216 | - | 162 | Protein_26 | hypothetical protein | - |
| NLZ13_RS28910 (16518) | 16518..17045 | + | 528 | WP_000290793.1 | single-stranded DNA-binding protein | - |
| NLZ13_RS28915 (17101) | 17101..17334 | + | 234 | WP_000006012.1 | DUF905 family protein | - |
| NLZ13_RS28920 (17398) | 17398..19354 | + | 1957 | Protein_29 | ParB/RepB/Spo0J family partition protein | - |
| NLZ13_RS28925 (19409) | 19409..19843 | + | 435 | WP_021534892.1 | conjugation system SOS inhibitor PsiB | - |
| NLZ13_RS28930 (19840) | 19840..20602 | + | 763 | Protein_31 | plasmid SOS inhibition protein A | - |
| NLZ13_RS28935 (20571) | 20571..20759 | - | 189 | WP_001299721.1 | hypothetical protein | - |
| - (20571) | 20571..20795 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (20571) | 20571..20795 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (20571) | 20571..20795 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (20571) | 20571..20795 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| NLZ13_RS28940 (20781) | 20781..20930 | + | 150 | Protein_33 | plasmid maintenance protein Mok | - |
| NLZ13_RS28945 (20872) | 20872..20997 | + | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| NLZ13_RS28950 (21444) | 21444..21617 | - | 174 | Protein_35 | hypothetical protein | - |
| NLZ13_RS28955 (21918) | 21918..22205 | + | 288 | WP_000107526.1 | hypothetical protein | - |
| NLZ13_RS28960 (22324) | 22324..23145 | + | 822 | WP_032172795.1 | DUF932 domain-containing protein | - |
| NLZ13_RS28965 (23440) | 23440..24042 | - | 603 | WP_112038064.1 | hypothetical protein | VF |
| NLZ13_RS28970 (24365) | 24365..24748 | + | 384 | WP_001342639.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| NLZ13_RS28975 (24939) | 24939..25382 | + | 444 | WP_249960394.1 | hypothetical protein | - |
| NLZ13_RS28980 (25716) | 25716..25943 | + | 228 | WP_097413801.1 | conjugal transfer relaxosome protein TraY | - |
| NLZ13_RS28985 (25976) | 25976..26335 | + | 360 | WP_000994781.1 | type IV conjugative transfer system pilin TraA | - |
| NLZ13_RS28990 (26350) | 26350..26661 | + | 312 | WP_000012113.1 | type IV conjugative transfer system protein TraL | - |
| NLZ13_RS28995 (26683) | 26683..27249 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| NLZ13_RS29000 (27236) | 27236..27964 | + | 729 | WP_209318071.1 | type-F conjugative transfer system secretin TraK | - |
| NLZ13_RS29005 (27964) | 27964..29391 | + | 1428 | WP_023352033.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| NLZ13_RS29010 (29381) | 29381..29965 | + | 585 | WP_112038063.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| NLZ13_RS29015 (29952) | 29952..30272 | + | 321 | WP_012881128.1 | conjugal transfer protein TrbD | - |
| NLZ13_RS29020 (30269) | 30269..30784 | + | 516 | WP_000809874.1 | type IV conjugative transfer system lipoprotein TraV | - |
| NLZ13_RS29025 (30919) | 30919..31140 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| NLZ13_RS29030 (31133) | 31133..31609 | + | 477 | WP_112038062.1 | hypothetical protein | - |
| NLZ13_RS29035 (31633) | 31633..31848 | + | 216 | WP_000556747.1 | hypothetical protein | - |
| NLZ13_RS29040 (31876) | 31876..32238 | + | 363 | WP_025492181.1 | hypothetical protein | - |
| NLZ13_RS29045 (32364) | 32364..34994 | + | 2631 | WP_254539451.1 | type IV secretion system protein TraC | - |
| NLZ13_RS29050 (34991) | 34991..35377 | + | 387 | WP_021536235.1 | type-F conjugative transfer system protein TrbI | - |
| NLZ13_RS29055 (35374) | 35374..36006 | + | 633 | WP_001203723.1 | type-F conjugative transfer system protein TraW | - |
| NLZ13_RS29060 (36003) | 36003..36995 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| NLZ13_RS29065 (37022) | 37022..37330 | + | 309 | WP_112038060.1 | hypothetical protein | - |
| NLZ13_RS29070 (37393) | 37393..37914 | + | 522 | WP_112038059.1 | hypothetical protein | - |
| NLZ13_RS29075 (37941) | 37941..38579 | + | 639 | WP_000087531.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| NLZ13_RS29080 (38576) | 38576..38947 | + | 372 | WP_021534930.1 | hypothetical protein | - |
| NLZ13_RS29085 (38972) | 38972..39394 | + | 423 | WP_001229309.1 | HNH endonuclease signature motif containing protein | - |
| NLZ13_RS29090 (39391) | 39391..41241 | + | 1851 | WP_112038058.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| NLZ13_RS29095 (41268) | 41268..41521 | + | 254 | Protein_64 | conjugal transfer protein TrbE | - |
| NLZ13_RS29100 (41514) | 41514..42257 | + | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| NLZ13_RS29105 (42396) | 42396..42632 | + | 237 | WP_112038057.1 | hypothetical protein | - |
| NLZ13_RS29110 (42864) | 42864..43145 | + | 282 | WP_112038056.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| NLZ13_RS29115 (43132) | 43132..43686 | + | 555 | WP_001697874.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| NLZ13_RS29120 (43676) | 43676..43990 | + | 315 | WP_021534922.1 | P-type conjugative transfer protein TrbJ | - |
| NLZ13_RS29125 (43944) | 43944..44336 | + | 393 | WP_112038055.1 | F-type conjugal transfer protein TrbF | - |
| NLZ13_RS29130 (44323) | 44323..45696 | + | 1374 | WP_181664670.1 | conjugal transfer pilus assembly protein TraH | - |
| NLZ13_RS29135 (45693) | 45693..48515 | + | 2823 | WP_086624354.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| NLZ13_RS29140 (48530) | 48530..49015 | + | 486 | WP_000605868.1 | hypothetical protein | - |
| NLZ13_RS29145 (49085) | 49085..49795 | + | 711 | WP_042032882.1 | conjugal transfer complement resistance protein TraT | - |
| NLZ13_RS29150 (49998) | 49998..50735 | + | 738 | WP_021536209.1 | hypothetical protein | - |
| NLZ13_RS29155 (50786) | 50786..52974 | + | 2189 | Protein_76 | type IV conjugative transfer system coupling protein TraD | - |
| NLZ13_RS29160 (52974) | 52974..58244 | + | 5271 | WP_112038052.1 | Multifunctional conjugation protein TraI | Relaxase |
| NLZ13_RS29165 (58264) | 58264..59010 | + | 747 | WP_021534916.1 | conjugal transfer pilus acetylase TraX | - |
| NLZ13_RS29170 (59065) | 59065..59625 | + | 561 | WP_000139341.1 | fertility inhibition protein FinO | - |
| NLZ13_RS29175 (59756) | 59756..59968 | + | 213 | WP_032161968.1 | hypothetical protein | - |
| NLZ13_RS29180 (60213) | 60213..60674 | + | 462 | WP_001233850.1 | thermonuclease family protein | - |
| NLZ13_RS29185 (60720) | 60720..60929 | + | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| NLZ13_RS29190 (60967) | 60967..61557 | + | 591 | WP_000766807.1 | DUF2726 domain-containing protein | - |
| NLZ13_RS29195 (61712) | 61712..62161 | + | 450 | WP_112038051.1 | hypothetical protein | - |
| - (62328) | 62328..62384 | - | 57 | NuclAT_1 | - | Antitoxin Detail |
| - (62328) | 62328..62384 | - | 57 | NuclAT_1 | - | Antitoxin Detail |
| - (62328) | 62328..62384 | - | 57 | NuclAT_1 | - | Antitoxin Detail |
| - (62328) | 62328..62384 | - | 57 | NuclAT_1 | - | Antitoxin Detail |
| NLZ13_RS29200 (62433) | 62433..62582 | + | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| NLZ13_RS29205 (62866) | 62866..63126 | + | 261 | WP_021536205.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|