MGE detailed information
MGE type: Prophage MGE length: 55080 bp
Accession: NZ_CP099868 Location: 2368906..2423985 Organism: Escherichia albertii strain 254_1_EW_B Replicon: chromosome
Accession: NZ_CP099868 Location: 2368906..2423985 Organism: Escherichia albertii strain 254_1_EW_B Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NIZ25_RS11550 (2366236) | 2366236..2368662 | - | 2427 | WP_256876107.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| NIZ25_RS11555 (2368906) | 2368906..2369211 | - | 306 | WP_059224354.1 | DUF1161 domain-containing protein | - |
| NIZ25_RS11560 (2369319) | 2369319..2370029 | + | 711 | WP_095575737.1 | YnfC family lipoprotein | - |
| NIZ25_RS11565 (2370032) | 2370032..2370592 | - | 561 | WP_000606224.1 | spermidine N1-acetyltransferase | - |
| NIZ25_RS11570 (2370627) | 2370627..2370968 | - | 342 | WP_001066434.1 | DUF1283 family protein | - |
| NIZ25_RS11575 (2371103) | 2371103..2371429 | + | 327 | WP_059215949.1 | YnfA family protein | - |
| NIZ25_RS11580 (2371626) | 2371626..2372840 | + | 1215 | WP_256876108.1 | starvation-sensing protein RspA | - |
| NIZ25_RS11585 (2372854) | 2372854..2373873 | + | 1020 | WP_000836027.1 | Zn-dependent oxidoreductase | - |
| NIZ25_RS11590 (2374061) | 2374061..2375341 | - | 1281 | WP_000876986.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| NIZ25_RS11595 (2375376) | 2375376..2375627 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| NIZ25_RS11600 (2375700) | 2375700..2378171 | - | 2472 | WP_000048330.1 | exonuclease | - |
| NIZ25_RS11605 (2378265) | 2378265..2378456 | - | 192 | WP_001083280.1 | lysis protein YdfD | - |
| NIZ25_RS11610 (2378453) | 2378453..2378641 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| NIZ25_RS11615 (2379128) | 2379128..2379703 | - | 576 | WP_000344954.1 | hypothetical protein | - |
| NIZ25_RS11620 (2379705) | 2379705..2379860 | - | 156 | WP_000379589.1 | DUF1391 family protein | - |
| NIZ25_RS11625 (2380053) | 2380053..2380460 | - | 408 | WP_001003381.1 | helix-turn-helix domain-containing protein | - |
| NIZ25_RS11630 (2380538) | 2380538..2380765 | + | 228 | WP_000476993.1 | Cro/CI family transcriptional regulator | - |
| NIZ25_RS11635 (2380749) | 2380749..2381270 | + | 522 | WP_000705349.1 | toxin YdaT family protein | - |
| NIZ25_RS11640 (2381251) | 2381251..2382216 | + | 966 | WP_000054504.1 | hypothetical protein | - |
| NIZ25_RS11645 (2382257) | 2382257..2382676 | + | 420 | WP_001151196.1 | DUF977 family protein | - |
| NIZ25_RS11650 (2382731) | 2382731..2383780 | + | 1050 | Protein_2274 | ISNCY family transposase ISCARN112 | Transposase |
| NIZ25_RS11655 (2383901) | 2383901..2384050 | + | 150 | WP_180302674.1 | ISNCY family transposase ISCARN112 | Transposase |
| NIZ25_RS11660 (2384487) | 2384487..2384819 | - | 333 | WP_001317460.1 | FlxA-like family protein | - |
| NIZ25_RS11665 (2385022) | 2385022..2385327 | - | 306 | WP_071527819.1 | protein YdfV | - |
| NIZ25_RS11670 (2385352) | 2385352..2385591 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| NIZ25_RS11675 (2385591) | 2385591..2385878 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| NIZ25_RS11680 (2385950) | 2385950..2386105 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| NIZ25_RS11685 (2386322) | 2386322..2386573 | + | 252 | WP_000980994.1 | protein Rem | - |
| NIZ25_RS11690 (2386640) | 2386640..2386918 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| NIZ25_RS11695 (2386920) | 2386920..2387969 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| NIZ25_RS11700 (2387983) | 2387983..2388735 | + | 753 | WP_001047135.1 | antitermination protein | - |
| NIZ25_RS11705 (2389013) | 2389013..2389102 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| NIZ25_RS11710 (2389157) | 2389157..2389369 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| NIZ25_RS11715 (2389670) | 2389670..2389885 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| NIZ25_RS11720 (2390249) | 2390249..2390419 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| NIZ25_RS11730 (2391975) | 2391975..2392163 | + | 189 | WP_256877802.1 | class II holin family protein | - |
| NIZ25_RS11735 (2392220) | 2392220..2393388 | + | 1169 | WP_094249652.1 | IS3 family transposase ISLad1 | Transposase |
| NIZ25_RS11740 (2393447) | 2393447..2393758 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| NIZ25_RS11745 (2393755) | 2393755..2394288 | + | 534 | WP_001092966.1 | lysozyme | - |
| NIZ25_RS11750 (2394285) | 2394285..2394782 | + | 498 | WP_001071776.1 | DUF2514 domain-containing protein | - |
| NIZ25_RS11755 (2395146) | 2395146..2395358 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| NIZ25_RS11760 (2395369) | 2395369..2395557 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| NIZ25_RS11765 (2395560) | 2395560..2395625 | + | 66 | WP_122134696.1 | small protein YnfR | - |
| NIZ25_RS11770 (2395705) | 2395705..2395860 | + | 156 | WP_001309517.1 | protein YnfN | - |
| NIZ25_RS11775 (2396032) | 2396032..2396205 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| NIZ25_RS11780 (2396357) | 2396357..2396767 | - | 411 | WP_000035577.1 | DUF1398 domain-containing protein | - |
| NIZ25_RS11785 (2397068) | 2397068..2397274 | + | 207 | WP_001031431.1 | hypothetical protein | - |
| NIZ25_RS11790 (2397847) | 2397847..2398374 | + | 528 | WP_001595800.1 | DUF1441 family protein | - |
| NIZ25_RS11795 (2398383) | 2398383..2400482 | + | 2100 | WP_096851820.1 | phage terminase large subunit family protein | - |
| NIZ25_RS11800 (2400479) | 2400479..2400691 | + | 213 | WP_001072975.1 | hypothetical protein | - |
| NIZ25_RS11805 (2400691) | 2400691..2402199 | + | 1509 | WP_000985929.1 | phage portal protein | - |
| NIZ25_RS11810 (2402144) | 2402144..2404171 | + | 2028 | WP_001136593.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| NIZ25_RS11815 (2404258) | 2404258..2404581 | + | 324 | WP_001097050.1 | DUF2190 family protein | - |
| NIZ25_RS11820 (2404574) | 2404574..2404849 | + | 276 | WP_001283153.1 | DNA breaking-rejoining protein | - |
| NIZ25_RS11825 (2404861) | 2404861..2405439 | + | 579 | WP_256876264.1 | phage tail protein | - |
| NIZ25_RS11830 (2405436) | 2405436..2405837 | + | 402 | WP_001079398.1 | phage minor tail U family protein | - |
| NIZ25_RS11835 (2405848) | 2405848..2406591 | + | 744 | WP_000211129.1 | phage tail protein | - |
| NIZ25_RS11840 (2406652) | 2406652..2407038 | + | 387 | WP_001300035.1 | phage minor tail protein G | - |
| NIZ25_RS11845 (2407047) | 2407047..2407376 | + | 330 | WP_001161009.1 | phage tail assembly protein T | - |
| NIZ25_RS11850 (2407348) | 2407348..2410413 | + | 3066 | WP_256880866.1 | phage tail tape measure protein | - |
| NIZ25_RS11855 (2410413) | 2410413..2410742 | + | 330 | WP_000447248.1 | phage tail protein | - |
| NIZ25_RS11860 (2410752) | 2410752..2411450 | + | 699 | WP_061348596.1 | phage minor tail protein L | - |
| NIZ25_RS11865 (2411456) | 2411456..2412199 | + | 744 | WP_256877708.1 | C40 family peptidase | - |
| NIZ25_RS11870 (2412097) | 2412097..2412744 | + | 648 | WP_000741589.1 | tail assembly protein | - |
| NIZ25_RS11875 (2412804) | 2412804..2416217 | + | 3414 | WP_061350801.1 | host specificity protein J | - |
| NIZ25_RS11880 (2416288) | 2416288..2416887 | + | 600 | WP_256880865.1 | hypothetical protein | VF |
| NIZ25_RS11885 (2416952) | 2416952..2420102 | + | 3151 | Protein_2321 | prophage tail fiber N-terminal domain-containing protein | - |
| NIZ25_RS11890 (2420102) | 2420102..2420677 | + | 576 | WP_000885584.1 | tail fiber assembly protein | - |
| NIZ25_RS11895 (2420775) | 2420775..2421365 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| NIZ25_RS11900 (2421683) | 2421683..2421916 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| NIZ25_RS11905 (2421985) | 2421985..2422098 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| NIZ25_RS11910 (2422702) | 2422702..2423985 | + | 1284 | Protein_2326 | MHS family MFS transporter | - |
| NIZ25_RS11915 (2424074) | 2424074..2425534 | + | 1461 | WP_059225576.1 | mannitol dehydrogenase family protein | - |
| NIZ25_RS11920 (2425570) | 2425570..2425773 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| NIZ25_RS11925 (2425948) | 2425948..2426634 | - | 687 | WP_000215537.1 | DNA-binding transcriptional regulator rspR | - |
| NIZ25_RS11930 (2426723) | 2426723..2427469 | - | 747 | WP_002462120.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|