MGE detailed information
MGE type: Genomic_island MGE length: 65000 bp
Accession: NZ_CP099542 Location: 47091..112090 Organism: Pantoea ananatis strain JT8-6 Replicon: chromosome
Accession: NZ_CP099542 Location: 47091..112090 Organism: Pantoea ananatis strain JT8-6 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NG830_RS00215 (NG830_00210) | 42534..42734 | - | 201 | WP_263775415.1 | hypothetical protein | - |
| NG830_RS00220 (NG830_00215) | 42795..42932 | + | 138 | Protein_43 | pilus assembly protein PilL | - |
| NG830_RS00225 (NG830_00220) | 42993..45797 | + | 2805 | WP_263775416.1 | conjugative transfer ATPase | - |
| NG830_RS00230 (NG830_00225) | 45809..45952 | + | 144 | WP_263775622.1 | hypothetical protein | - |
| NG830_RS00235 (NG830_00230) | 46589..46847 | + | 259 | Protein_46 | transposase | - |
| NG830_RS00240 (NG830_00235) | 47091..48104 | - | 1014 | WP_050598421.1 | LysR family transcriptional regulator | - |
| NG830_RS00245 (NG830_00240) | 48259..48502 | - | 244 | Protein_48 | transposase | - |
| NG830_RS00250 (NG830_00245) | 48767..49688 | - | 922 | Protein_49 | IS3 family transposase | - |
| NG830_RS00255 (NG830_00250) | 50012..54238 | - | 4227 | WP_263775417.1 | hypothetical protein | VF |
| NG830_RS00260 (NG830_00255) | 54311..55447 | - | 1137 | WP_252294963.1 | autotransporter strand-loop-strand O-heptosyltransferase | - |
| NG830_RS00265 (NG830_00260) | 55805..56797 | + | 993 | WP_239642695.1 | LysR family transcriptional regulator | - |
| NG830_RS00270 (NG830_00265) | 57293..57744 | - | 452 | Protein_53 | IS66 family transposase ISCro1 | Transposase |
| NG830_RS00275 (NG830_00270) | 58048..58572 | - | 525 | WP_028724137.1 | phenolic acid decarboxylase | - |
| NG830_RS00280 (NG830_00275) | 58626..59492 | - | 867 | WP_239642694.1 | MBL fold metallo-hydrolase | - |
| NG830_RS00285 (NG830_00280) | 59805..60842 | - | 1038 | Protein_56 | IS66 family transposase ISCro1 | Transposase |
| NG830_RS00290 (NG830_00285) | 60848..61445 | - | 598 | Protein_57 | IS66 family transposase ISSfl3 | Transposase |
| NG830_RS00295 (NG830_00290) | 61880..62656 | + | 777 | WP_028724134.1 | N-acetylmuramoyl-L-alanine amidase | - |
| NG830_RS00300 (NG830_00295) | 62839..63255 | - | 417 | WP_028724133.1 | hypothetical protein | - |
| NG830_RS00305 (NG830_00300) | 64373..64588 | - | 216 | WP_028724132.1 | IS66 family transposase ISCro1 | Transposase |
| NG830_RS00310 (NG830_00305) | 64948..67512 | + | 2565 | WP_252294287.1 | hypothetical protein | VF |
| NG830_RS00315 (NG830_00310) | 67765..68364 | + | 600 | WP_028724130.1 | nitroreductase family protein | - |
| NG830_RS00320 (NG830_00315) | 68637..68951 | - | 315 | Protein_63 | transposase | - |
| NG830_RS00325 (NG830_00320) | 69366..70217 | + | 852 | WP_050598419.1 | HTH-type transcriptional activator RhaS | VF |
| NG830_RS00330 (NG830_00325) | 70583..70960 | + | 378 | WP_155301450.1 | hypothetical protein | - |
| NG830_RS00335 (NG830_00330) | 71035..71212 | + | 178 | Protein_66 | YadA-like family protein | - |
| NG830_RS00340 (NG830_00335) | 71493..71753 | + | 261 | WP_050598418.1 | LuxR C-terminal-related transcriptional regulator | - |
| NG830_RS00345 (NG830_00340) | 71825..72022 | - | 198 | Protein_68 | IS5/IS1182 family transposase | - |
| NG830_RS00350 (NG830_00345) | 72109..72392 | + | 284 | Protein_69 | IS3 family transposase IS1400 | Transposase |
| NG830_RS00355 (NG830_00350) | 72375..72899 | - | 525 | Protein_70 | IS3 family transposase ISAs9 | Transposase |
| NG830_RS00360 (NG830_00355) | 73011..73400 | + | 390 | Protein_71 | integrase core domain-containing protein | - |
| NG830_RS00365 (NG830_00360) | 73613..73957 | - | 345 | WP_033778078.1 | hypothetical protein | - |
| NG830_RS00370 (NG830_00365) | 75471..76046 | + | 576 | WP_252294285.1 | amidohydrolase family protein | - |
| NG830_RS00375 (NG830_00370) | 76155..76310 | + | 156 | WP_252294283.1 | hypothetical protein | - |
| NG830_RS00380 (NG830_00375) | 76490..77078 | - | 589 | Protein_75 | helix-turn-helix domain-containing protein | - |
| NG830_RS00385 (NG830_00380) | 77580..78476 | + | 897 | WP_071994887.1 | hypothetical protein | VF |
| NG830_RS00390 (NG830_00385) | 78669..79187 | - | 519 | WP_071994886.1 | putative fimbrial-like protein SfmF | VF |
| NG830_RS00395 (NG830_00390) | 79180..80163 | - | 984 | WP_263775423.1 | fimbrial protein | - |
| NG830_RS00400 (NG830_00395) | 80160..82655 | - | 2496 | WP_162150529.1 | Outer membrane usher protein SfmD | VF |
| NG830_RS00405 (NG830_00400) | 82724..83395 | - | 672 | WP_221611350.1 | putative fimbrial chaperone SfmC | VF |
| NG830_RS00410 (NG830_00405) | 83458..84015 | - | 558 | WP_252294282.1 | Type-1 fimbrial protein, A chain | VF |
| NG830_RS00415 (NG830_00410) | 84424..84705 | + | 282 | WP_028724120.1 | LuxR C-terminal-related transcriptional regulator | - |
| NG830_RS00420 (NG830_00415) | 84735..85610 | + | 876 | WP_252294280.1 | N-acetylmuramoyl-L-alanine amidase | - |
| NG830_RS00425 (NG830_00420) | 85837..86235 | - | 399 | WP_033778077.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| NG830_RS00430 (NG830_00425) | 86259..86489 | - | 231 | WP_028724117.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| NG830_RS00435 (NG830_00430) | 87077..88235 | + | 1159 | Protein_86 | IS30 family transposase ISCfr4 | Transposase |
| NG830_RS00440 (NG830_00435) | 88719..89273 | - | 555 | WP_263775424.1 | hypothetical protein | - |
| NG830_RS00445 (NG830_00440) | 89327..89491 | - | 165 | Protein_88 | conjugal transfer protein TraF | - |
| NG830_RS00450 (NG830_00445) | 89489..89722 | + | 234 | Protein_89 | TIGR03752 family integrating conjugative element protein | - |
| NG830_RS00455 (NG830_00450) | 89722..89994 | + | 273 | WP_263775425.1 | hypothetical protein | - |
| NG830_RS00460 (NG830_00455) | 89984..90397 | + | 414 | WP_210456553.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| NG830_RS00465 (NG830_00460) | 90398..93202 | + | 2805 | WP_263775426.1 | conjugative transfer ATPase | - |
| NG830_RS00470 (NG830_00465) | 93214..93618 | + | 405 | WP_210456537.1 | hypothetical protein | - |
| NG830_RS00475 (NG830_00470) | 94090..95190 | + | 1101 | WP_239642652.1 | Na+/H+ antiporter NhaA | - |
| NG830_RS00480 (NG830_00475) | 95629..95943 | - | 315 | WP_239642650.1 | DUF3574 domain-containing protein | - |
| NG830_RS00485 (NG830_00480) | 96460..96666 | + | 207 | WP_028722283.1 | hypothetical protein | - |
| NG830_RS00490 (NG830_00485) | 96837..96989 | - | 153 | WP_155301427.1 | hypothetical protein | - |
| NG830_RS00495 (NG830_00490) | 97539..97775 | + | 237 | WP_028722282.1 | hypothetical protein | VF |
| NG830_RS00500 (NG830_00495) | 97784..97963 | + | 180 | WP_028722281.1 | hypothetical protein | - |
| NG830_RS00505 (NG830_00500) | 98276..98470 | + | 195 | WP_071994847.1 | general stress protein | - |
| NG830_RS00510 (NG830_00505) | 98601..99164 | + | 564 | WP_028722280.1 | hypothetical protein | - |
| NG830_RS00515 (NG830_00510) | 99365..99691 | + | 327 | WP_071994846.1 | four-helix bundle copper-binding protein | - |
| NG830_RS00520 (NG830_00515) | 100431..103397 | + | 2967 | WP_028722278.1 | formate dehydrogenase subunit alpha | - |
| NG830_RS00525 (NG830_00520) | 103397..103879 | + | 483 | WP_028722277.1 | DUF1641 domain-containing protein | - |
| NG830_RS00530 (NG830_00525) | 103872..105233 | + | 1362 | WP_050598372.1 | cytochrome ubiquinol oxidase subunit I | - |
| NG830_RS00535 (NG830_00530) | 105230..106174 | + | 945 | WP_050598371.1 | cytochrome d ubiquinol oxidase subunit II | - |
| NG830_RS00540 (NG830_00535) | 106719..108356 | - | 1638 | WP_028722275.1 | hypothetical protein | VF |
| NG830_RS00545 (NG830_00540) | 108854..109489 | + | 636 | WP_263775427.1 | DUF2268 domain-containing protein | - |
| NG830_RS00550 (NG830_00545) | 109745..110485 | + | 741 | Protein_109 | ATP-binding protein | - |
| NG830_RS00555 (NG830_00550) | 111082..111264 | + | 183 | WP_128391767.1 | hypothetical protein | - |
| NG830_RS00560 (NG830_00555) | 111358..111672 | + | 315 | WP_128391766.1 | hypothetical protein | - |
| NG830_RS00565 (NG830_00560) | 111782..112090 | + | 309 | WP_128391765.1 | hypothetical protein | - |
| NG830_RS00570 (NG830_00565) | 112163..113032 | + | 870 | WP_263775428.1 | zincin-like metallopeptidase domain-containing protein | - |
| NG830_RS00575 (NG830_00570) | 113126..114070 | + | 945 | WP_128391762.1 | DUF1281 domain-containing protein | - |
| NG830_RS00580 (NG830_00575) | 114209..114925 | + | 717 | WP_128391761.1 | type I restriction-modification system subunit M | - |
| NG830_RS00585 (NG830_00580) | 115697..116122 | + | 426 | WP_022622231.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| NG830_RS00590 (NG830_00585) | 116122..116298 | + | 177 | Protein_117 | DNA polymerase V subunit UmuC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|