MGE detailed information
MGE type: Prophage MGE length: 63050 bp
Accession: NZ_CP098723 Location: 1554967..1618016 Organism: Yersinia ruckeri strain NVI-11065 Replicon: chromosome
Accession: NZ_CP098723 Location: 1554967..1618016 Organism: Yersinia ruckeri strain NVI-11065 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND444_RS07105 (ND444_07100) | 1551501..1551824 | + | 324 | WP_004721744.1 | YebG family protein | - |
| ND444_RS07110 (ND444_07105) | 1551865..1552173 | + | 309 | WP_004721742.1 | N(4)-acetylcytidine aminohydrolase | - |
| ND444_RS07115 (ND444_07110) | 1552257..1552622 | + | 366 | WP_004721741.1 | protein YebF | - |
| ND444_RS07120 (ND444_07115) | 1552931..1554961 | + | 2031 | WP_265316021.1 | prolyl oligopeptidase family serine peptidase | - |
| ND444_RS07125 (ND444_07120) | 1554967..1555629 | - | 663 | WP_038243340.1 | exodeoxyribonuclease X | - |
| ND444_RS07130 (ND444_07125) | 1556496..1557446 | + | 951 | WP_038243342.1 | prolyl aminopeptidase | - |
| ND444_RS07135 (ND444_07130) | 1557569..1557799 | - | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| ND444_RS07140 (ND444_07135) | 1558202..1558717 | + | 516 | WP_004721727.1 | non-heme ferritin | - |
| ND444_RS07145 (ND444_07140) | 1559122..1559508 | + | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| ND444_RS07150 (ND444_07145) | 1559510..1560394 | + | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| ND444_RS07155 (ND444_07150) | 1560489..1560830 | + | 342 | WP_004721721.1 | YebY family protein | - |
| - | 1560940..1561086 | - | 147 | - | - | Antitoxin Detail |
| - | 1560989..1561082 | + | 94 | - | - | Toxin Detail |
| ND444_RS07160 (ND444_07155) | 1561159..1562268 | - | 1110 | WP_265316651.1 | hypothetical protein ; Integrase | Integrase |
| ND444_RS07165 (ND444_07160) | 1562243..1562512 | - | 270 | WP_096823474.1 | excisionase | - |
| ND444_RS07170 (ND444_07165) | 1562629..1562883 | - | 255 | WP_193553624.1 | hypothetical protein | - |
| ND444_RS07175 (ND444_07170) | 1563074..1563247 | - | 174 | WP_170854680.1 | hypothetical protein | - |
| ND444_RS07180 (ND444_07175) | 1563391..1564227 | - | 837 | WP_202976849.1 | hypothetical protein | - |
| ND444_RS07185 (ND444_07180) | 1564292..1564720 | - | 429 | WP_267260653.1 | hypothetical protein | - |
| ND444_RS07190 (ND444_07185) | 1564717..1565856 | - | 1140 | WP_096823472.1 | hypothetical protein | - |
| ND444_RS07195 (ND444_07190) | 1565901..1567505 | - | 1605 | WP_267260654.1 | YqaJ viral recombinase family protein | - |
| ND444_RS07200 (ND444_07195) | 1567492..1568337 | - | 846 | WP_267260655.1 | phage recombination protein Bet | - |
| ND444_RS07205 (ND444_07200) | 1568638..1568964 | - | 327 | WP_267260656.1 | hypothetical protein | - |
| ND444_RS07210 (ND444_07205) | 1568980..1569450 | - | 471 | WP_267260657.1 | zinc-finger-containing protein | - |
| ND444_RS07215 (ND444_07210) | 1569490..1569759 | - | 270 | WP_096823468.1 | KTSC domain-containing protein | - |
| ND444_RS07220 (ND444_07215) | 1569842..1570087 | - | 246 | WP_126940131.1 | hypothetical protein | - |
| ND444_RS07225 (ND444_07220) | 1570363..1570977 | - | 615 | WP_267260658.1 | zinc ribbon domain-containing protein | - |
| ND444_RS07230 (ND444_07225) | 1570988..1571674 | - | 687 | WP_267260659.1 | S24 family peptidase | - |
| ND444_RS07235 (ND444_07230) | 1571805..1572050 | + | 246 | WP_038243385.1 | hypothetical protein | - |
| ND444_RS07240 (ND444_07235) | 1572132..1572437 | - | 306 | WP_038243388.1 | hypothetical protein | - |
| ND444_RS07245 (ND444_07240) | 1572523..1572885 | + | 363 | WP_038243391.1 | hypothetical protein | - |
| ND444_RS07250 (ND444_07245) | 1572882..1573061 | + | 180 | WP_096823462.1 | hypothetical protein | - |
| ND444_RS07255 (ND444_07250) | 1573070..1573915 | + | 846 | WP_267260660.1 | hypothetical protein | - |
| ND444_RS07260 (ND444_07255) | 1573957..1574691 | + | 735 | WP_267260661.1 | hypothetical protein | - |
| ND444_RS07265 (ND444_07260) | 1574695..1575594 | + | 900 | Protein_1401 | recombination-associated protein RdgC | - |
| ND444_RS07270 (ND444_07265) | 1575661..1575831 | + | 171 | WP_267260680.1 | DNA translocase FtsK | - |
| ND444_RS07275 (ND444_07270) | 1575831..1576178 | + | 348 | WP_267260662.1 | hypothetical protein | - |
| ND444_RS07280 (ND444_07275) | 1576175..1577101 | + | 927 | WP_248577748.1 | site-specific DNA-methyltransferase | - |
| ND444_RS07285 (ND444_07280) | 1577098..1579110 | + | 2013 | WP_267260663.1 | MT-A70 family methyltransferase | - |
| ND444_RS07290 (ND444_07285) | 1579107..1579754 | + | 648 | WP_087931051.1 | DUF1367 family protein | - |
| ND444_RS07295 (ND444_07290) | 1579756..1580085 | + | 330 | WP_248577751.1 | DUF1364 domain-containing protein | - |
| ND444_RS07300 (ND444_07295) | 1580123..1580974 | + | 852 | WP_248577752.1 | DUF2971 domain-containing protein | - |
| ND444_RS07305 (ND444_07300) | 1580996..1581442 | + | 447 | WP_267260664.1 | VRR-NUC domain-containing protein | - |
| ND444_RS07310 (ND444_07305) | 1581457..1582302 | + | 846 | WP_267260665.1 | nucleotide-binding protein | - |
| ND444_RS07315 (ND444_07310) | 1582390..1583199 | + | 810 | WP_267260666.1 | hypothetical protein | - |
| ND444_RS07320 (ND444_07315) | 1583372..1583584 | + | 213 | WP_038245276.1 | class II holin family protein | - |
| ND444_RS07325 (ND444_07320) | 1583590..1584072 | + | 483 | WP_162486782.1 | lysozyme | - |
| ND444_RS07330 (ND444_07325) | 1584204..1584746 | + | 543 | WP_096823449.1 | DUF2570 domain-containing protein | - |
| ND444_RS07335 (ND444_07330) | 1584743..1585087 | + | 345 | WP_267260667.1 | Gp49 family protein | - |
| ND444_RS07340 (ND444_07335) | 1585153..1586010 | + | 858 | WP_267260668.1 | terminase | - |
| ND444_RS07345 (ND444_07340) | 1586049..1587713 | + | 1665 | WP_096823679.1 | terminase | - |
| ND444_RS07350 (ND444_07345) | 1587713..1589839 | + | 2127 | WP_096823447.1 | portal protein | - |
| ND444_RS07355 (ND444_07350) | 1590110..1591162 | + | 1053 | WP_267260669.1 | hypothetical protein | - |
| ND444_RS07360 (ND444_07355) | 1591223..1592446 | + | 1224 | WP_038245287.1 | N4-gp56 family major capsid protein | - |
| ND444_RS07365 (ND444_07360) | 1592509..1592892 | + | 384 | WP_038245289.1 | hypothetical protein | - |
| ND444_RS07370 (ND444_07365) | 1592947..1593387 | + | 441 | WP_038245291.1 | hypothetical protein | - |
| ND444_RS07375 (ND444_07370) | 1593390..1593977 | + | 588 | WP_038245293.1 | hypothetical protein | - |
| ND444_RS07380 (ND444_07375) | 1593977..1594630 | + | 654 | WP_096823443.1 | hypothetical protein | - |
| ND444_RS07385 (ND444_07380) | 1594627..1596996 | + | 2370 | WP_267260670.1 | prophage tail fiber N-terminal domain-containing protein | - |
| ND444_RS07390 (ND444_07385) | 1597381..1597527 | + | 147 | WP_157836125.1 | hypothetical protein | - |
| ND444_RS07395 (ND444_07390) | 1597649..1598080 | - | 432 | Protein_1427 | Hcp family type VI secretion system effector | - |
| ND444_RS07400 (ND444_07395) | 1598406..1600034 | + | 1629 | WP_248577763.1 | hypothetical protein | - |
| ND444_RS07405 (ND444_07400) | 1600031..1601245 | + | 1215 | WP_038246004.1 | DUF1983 domain-containing protein | - |
| ND444_RS07410 (ND444_07405) | 1601312..1602340 | + | 1029 | WP_087931056.1 | hypothetical protein | - |
| ND444_RS07415 (ND444_07410) | 1602315..1602689 | + | 375 | WP_248577765.1 | hypothetical protein | - |
| ND444_RS07420 (ND444_07415) | 1602945..1603604 | + | 660 | WP_267260671.1 | hypothetical protein | - |
| ND444_RS07425 (ND444_07420) | 1603607..1603990 | + | 384 | WP_096823437.1 | hypothetical protein | - |
| ND444_RS07430 (ND444_07425) | 1603990..1604250 | + | 261 | WP_038242746.1 | hypothetical protein | - |
| ND444_RS07435 (ND444_07430) | 1604263..1604523 | + | 261 | WP_267260672.1 | hypothetical protein | - |
| ND444_RS07440 (ND444_07435) | 1604551..1605651 | + | 1101 | WP_267260673.1 | hypothetical protein | - |
| ND444_RS07445 (ND444_07440) | 1605726..1605887 | + | 162 | WP_157836120.1 | hypothetical protein | - |
| ND444_RS07450 (ND444_07445) | 1606153..1614480 | + | 8328 | WP_267260674.1 | LPD5 domain-containing protein | - |
| ND444_RS07455 (ND444_07450) | 1614785..1616551 | + | 1767 | WP_267260675.1 | AIPR family protein | - |
| ND444_RS07460 (ND444_07455) | 1617411..1618058 | - | 648 | WP_248578633.1 | hypothetical protein ; Integrase | Integrase |
| ND444_RS07465 (ND444_07460) | 1618135..1619280 | - | 1146 | WP_004721718.1 | YRC family class C beta-lactamase | - |
| ND444_RS07470 (ND444_07465) | 1620021..1620689 | - | 669 | WP_099511589.1 | hypothetical protein | - |
| ND444_RS07475 (ND444_07470) | 1620914..1621543 | - | 630 | WP_004721714.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|