MGE detailed information
MGE type: Genomic_island MGE length: 13103 bp
Accession: NZ_CP098719 Location: 3007682..3020784 Organism: Yersinia ruckeri strain NVI-11267 Replicon: chromosome
Accession: NZ_CP098719 Location: 3007682..3020784 Organism: Yersinia ruckeri strain NVI-11267 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND445_RS13880 (ND445_13875) | 3002977..3003678 | + | 702 | WP_050297207.1 | WYL domain-containing protein | - |
| ND445_RS13885 (ND445_13880) | 3003684..3004250 | + | 567 | WP_096823569.1 | hypothetical protein | - |
| ND445_RS13890 (ND445_13885) | 3004289..3004741 | + | 453 | WP_096823570.1 | hypothetical protein | - |
| ND445_RS13895 (ND445_13890) | 3004738..3005176 | + | 439 | Protein_2696 | IrmA family protein | - |
| ND445_RS13900 (ND445_13895) | 3005249..3005515 | + | 267 | Protein_2697 | DUF905 family protein | - |
| ND445_RS13905 (ND445_13900) | 3005588..3006409 | + | 822 | WP_096823571.1 | DUF932 domain-containing protein | - |
| ND445_RS13910 (ND445_13905) | 3006440..3006883 | + | 444 | WP_096823572.1 | antirestriction protein | - |
| ND445_RS13915 (ND445_13910) | 3006896..3007438 | + | 543 | WP_096823573.1 | DNA repair protein RadC | - |
| ND445_RS13920 (ND445_13915) | 3007435..3007656 | + | 222 | WP_069325310.1 | DUF987 domain-containing protein | - |
| ND445_RS13925 (ND445_13920) | 3007682..3008047 | + | 366 | WP_096823574.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| ND445_RS13930 (ND445_13925) | 3008086..3008415 | + | 330 | WP_096823575.1 | TA system toxin CbtA family protein | Toxin Detail |
| ND445_RS13935 (ND445_13930) | 3008811..3009740 | + | 930 | Protein_2704 | Prophage integrase IntA ; Integrase | Integrase |
| ND445_RS13940 (ND445_13935) | 3009959..3010540 | + | 582 | WP_256466057.1 | DUF4942 domain-containing protein | - |
| ND445_RS13945 (ND445_13940) | 3010649..3010972 | + | 324 | WP_038277221.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| ND445_RS13950 (ND445_13945) | 3010959..3011240 | + | 282 | WP_038277219.1 | helix-turn-helix transcriptional regulator | - |
| ND445_RS13955 (ND445_13950) | 3011449..3012989 | - | 1541 | Protein_2708 | IS3 family transposase ISKpn38 | Transposase |
| ND445_RS13960 (ND445_13955) | 3013062..3013459 | - | 398 | Protein_2709 | IS3 family transposase IS1400 | Transposase |
| ND445_RS13965 (ND445_13960) | 3013688..3013990 | + | 303 | WP_096823578.1 | hypothetical protein | - |
| ND445_RS13970 (ND445_13965) | 3014085..3014807 | + | 723 | WP_071704641.1 | Chaperone protein FimC | VF |
| ND445_RS13975 (ND445_13970) | 3014916..3017462 | + | 2547 | WP_256466049.1 | Outer membrane usher protein FimD | VF |
| ND445_RS13980 (ND445_13975) | 3017509..3018072 | + | 564 | WP_051847020.1 | S-fimbrial protein subunit SfaG | VF |
| ND445_RS13985 (ND445_13980) | 3018253..3019131 | + | 879 | WP_038243517.1 | hypothetical protein | - |
| ND445_RS13990 (ND445_13985) | 3019270..3019458 | + | 189 | Protein_2715 | helix-turn-helix domain-containing protein | - |
| ND445_RS13995 (ND445_13990) | 3019538..3019654 | - | 117 | Protein_2716 | IS21 family transposase | - |
| ND445_RS14000 (ND445_13995) | 3019858..3020784 | - | 927 | WP_038276096.1 | LysR family transcriptional regulator | - |
| ND445_RS14005 (ND445_14000) | 3021005..3021321 | + | 317 | Protein_2718 | IS3 family transposase | - |
| ND445_RS14010 (ND445_14005) | 3021318..3021434 | + | 117 | Protein_2719 | DDE-type integrase/transposase/recombinase | - |
| ND445_RS14015 (ND445_14010) | 3022006..3022584 | + | 579 | WP_071665691.1 | transposase | - |
| ND445_RS14020 (ND445_14015) | 3022698..3023348 | + | 651 | WP_052173091.1 | beta/gamma crystallin domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|