MGE detailed information
MGE type: Prophage MGE length: 99793 bp
Accession: NZ_CP098703 Location: 1486134..1585926 Organism: Yersinia ruckeri strain NVI-4840 Replicon: chromosome
Accession: NZ_CP098703 Location: 1486134..1585926 Organism: Yersinia ruckeri strain NVI-4840 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND437_RS06775 (ND437_06775) | 1482141..1483091 | + | 951 | WP_038243342.1 | prolyl aminopeptidase | - |
| ND437_RS06780 (ND437_06780) | 1483214..1483444 | - | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| ND437_RS06785 (ND437_06785) | 1483847..1484362 | + | 516 | WP_004721727.1 | non-heme ferritin | - |
| ND437_RS06790 (ND437_06790) | 1484767..1485153 | + | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| ND437_RS06795 (ND437_06795) | 1485155..1486039 | + | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| ND437_RS06800 (ND437_06800) | 1486134..1486475 | + | 342 | WP_004721721.1 | YebY family protein | - |
| - | 1486585..1486733 | - | 149 | - | - | Antitoxin Detail |
| - | 1486634..1486727 | + | 94 | - | - | Toxin Detail |
| ND437_RS06805 (ND437_06805) | 1486770..1487855 | - | 1086 | WP_186368419.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| ND437_RS06810 (ND437_06810) | 1488022..1488240 | - | 219 | WP_045844132.1 | DNA-binding transcriptional regulator | - |
| ND437_RS06815 (ND437_06815) | 1488334..1489500 | - | 1167 | WP_145522445.1 | phage late control D family protein | - |
| ND437_RS06820 (ND437_06820) | 1489497..1489982 | - | 486 | WP_038276623.1 | phage tail protein | - |
| ND437_RS06825 (ND437_06825) | 1489994..1492447 | - | 2454 | WP_071666770.1 | phage tail tape measure protein | - |
| ND437_RS06830 (ND437_06830) | 1492440..1492562 | - | 123 | WP_038276619.1 | GpE family phage tail protein | - |
| ND437_RS06835 (ND437_06835) | 1492589..1492885 | - | 297 | WP_038276617.1 | phage tail assembly protein | - |
| ND437_RS06840 (ND437_06840) | 1492941..1493456 | - | 516 | WP_038276615.1 | phage major tail tube protein | - |
| ND437_RS06845 (ND437_06845) | 1493471..1494640 | - | 1170 | WP_248594039.1 | phage tail sheath protein | - |
| ND437_RS06850 (ND437_06850) | 1494768..1495436 | - | 669 | WP_049689557.1 | tail fiber assembly protein | - |
| ND437_RS06855 (ND437_06855) | 1495436..1496818 | - | 1383 | WP_071666772.1 | phage tail protein | - |
| ND437_RS06860 (ND437_06860) | 1496808..1497425 | - | 618 | WP_234049313.1 | phage tail protein I | - |
| ND437_RS06865 (ND437_06865) | 1497418..1498326 | - | 909 | WP_038276605.1 | baseplate assembly protein | - |
| ND437_RS06870 (ND437_06870) | 1498331..1498681 | - | 351 | WP_038276603.1 | GPW/gp25 family protein | - |
| ND437_RS06875 (ND437_06875) | 1498678..1499316 | - | 639 | WP_265315805.1 | phage baseplate assembly protein V | - |
| ND437_RS06880 (ND437_06880) | 1499508..1500794 | - | 1287 | WP_265315806.1 | antiviral reverse transcriptase Drt2 | - |
| ND437_RS06885 (ND437_06885) | 1501217..1501666 | - | 450 | WP_265315807.1 | phage virion morphogenesis protein | - |
| ND437_RS06890 (ND437_06890) | 1501663..1502127 | - | 465 | WP_248574909.1 | phage tail protein | - |
| ND437_RS06895 (ND437_06895) | 1502090..1502338 | - | 249 | WP_245759491.1 | Rz1-like lysis system protein LysC | - |
| ND437_RS06900 (ND437_06900) | 1502223..1502639 | - | 417 | WP_071706577.1 | Rz-like lysis system protein LysB | - |
| ND437_RS06905 (ND437_06905) | 1502641..1503147 | - | 507 | WP_071706578.1 | lysozyme | - |
| ND437_RS06910 (ND437_06910) | 1503131..1503340 | - | 210 | WP_038276586.1 | HP1 family phage holin | - |
| ND437_RS06915 (ND437_06915) | 1503343..1503546 | - | 204 | WP_038276584.1 | tail protein X | - |
| ND437_RS06920 (ND437_06920) | 1503546..1504019 | - | 474 | WP_045844561.1 | head completion/stabilization protein | - |
| ND437_RS06925 (ND437_06925) | 1504111..1504764 | - | 654 | WP_265315808.1 | phage terminase small subunit | - |
| ND437_RS06930 (ND437_06930) | 1504768..1505970 | - | 1203 | WP_038276580.1 | phage major capsid protein, P2 family | - |
| ND437_RS06935 (ND437_06935) | 1506033..1506887 | - | 855 | WP_038276578.1 | GPO family capsid scaffolding protein | - |
| ND437_RS06940 (ND437_06940) | 1507042..1508805 | + | 1764 | WP_038276576.1 | terminase ATPase subunit family protein | - |
| ND437_RS06945 (ND437_06945) | 1508805..1509842 | + | 1038 | WP_038276574.1 | phage portal protein | - |
| ND437_RS06950 (ND437_06950) | 1510248..1510442 | - | 195 | WP_038276572.1 | hypothetical protein | - |
| ND437_RS06955 (ND437_06955) | 1510591..1510941 | - | 351 | WP_265315809.1 | hypothetical protein | - |
| ND437_RS06960 (ND437_06960) | 1510934..1513240 | - | 2307 | WP_265315810.1 | replication endonuclease | - |
| ND437_RS06965 (ND437_06965) | 1513402..1513659 | - | 258 | Protein_1346 | DUF5405 family protein | - |
| ND437_RS06970 (ND437_06970) | 1513698..1513964 | - | 267 | WP_045844118.1 | DUF2732 family protein | - |
| ND437_RS06975 (ND437_06975) | 1514106..1514615 | - | 510 | WP_049689543.1 | hypothetical protein | - |
| ND437_RS06980 (ND437_06980) | 1514612..1514785 | - | 174 | WP_167335302.1 | hypothetical protein | - |
| ND437_RS06985 (ND437_06985) | 1514796..1515314 | - | 519 | WP_045844116.1 | phage regulatory CII family protein | - |
| ND437_RS06990 (ND437_06990) | 1515347..1515748 | - | 402 | WP_052690310.1 | hypothetical protein | - |
| ND437_RS06995 (ND437_06995) | 1515864..1516718 | + | 855 | WP_045844115.1 | phage repressor protein | - |
| ND437_RS07000 (ND437_07000) | 1516749..1517228 | + | 480 | WP_045844114.1 | hypothetical protein | - |
| ND437_RS07005 (ND437_07005) | 1517535..1517861 | - | 327 | WP_267263293.1 | hypothetical protein ; Integrase | Integrase |
| ND437_RS07010 (ND437_07010) | 1517955..1519105 | + | 1151 | WP_087931031.1 | IS3 family transposase ISSpr1 | Transposase |
| ND437_RS07015 (ND437_07015) | 1519117..1519377 | - | 261 | WP_267263294.1 | hypothetical protein ; Integrase | Integrase |
| ND437_RS07020 (ND437_07020) | 1519496..1520641 | - | 1146 | WP_004721718.1 | YRC family class C beta-lactamase | - |
| ND437_RS07025 (ND437_07025) | 1521382..1522050 | - | 669 | WP_233701006.1 | hypothetical protein | - |
| ND437_RS07030 (ND437_07030) | 1522275..1522904 | - | 630 | WP_004721714.1 | hypothetical protein | - |
| ND437_RS07035 (ND437_07035) | 1524112..1524495 | + | 384 | WP_038251760.1 | hypothetical protein | - |
| ND437_RS07040 (ND437_07040) | 1525059..1525238 | - | 180 | WP_276560939.1 | GhoT/OrtT family toxin | - |
| ND437_RS07045 (ND437_07045) | 1526051..1526722 | + | 672 | WP_038251427.1 | CsgG/HfaB family protein | - |
| ND437_RS07050 (ND437_07050) | 1526741..1527097 | + | 357 | WP_038242728.1 | DUF4810 domain-containing protein | - |
| ND437_RS07055 (ND437_07055) | 1527094..1527753 | + | 660 | WP_038242727.1 | DUF799 domain-containing protein | - |
| ND437_RS07060 (ND437_07060) | 1528280..1528513 | + | 234 | WP_004721700.1 | hypothetical protein | - |
| ND437_RS07065 (ND437_07065) | 1528753..1528923 | + | 171 | WP_004721699.1 | YnfU family zinc-binding protein | - |
| ND437_RS07070 (ND437_07070) | 1528920..1529039 | - | 120 | WP_230675747.1 | small membrane protein YniD | - |
| ND437_RS07075 (ND437_07075) | 1529183..1529581 | + | 399 | WP_004721697.1 | ASCH domain-containing protein | - |
| ND437_RS07080 (ND437_07080) | 1529701..1529943 | - | 243 | WP_004721695.1 | DUF1480 family protein | - |
| ND437_RS07085 (ND437_07085) | 1530054..1531763 | - | 1710 | WP_248578631.1 | diguanylate cyclase | - |
| ND437_RS07090 (ND437_07090) | 1532678..1535308 | - | 2631 | WP_038276011.1 | Intermembrane transport protein YebT | VF |
| ND437_RS07095 (ND437_07095) | 1535277..1536524 | - | 1248 | WP_038276009.1 | membrane integrity lipid transport subunit YebS | - |
| ND437_RS07100 (ND437_07100) | 1536864..1537361 | + | 498 | WP_004723359.1 | GAF domain-containing protein | - |
| ND437_RS07105 (ND437_07105) | 1537457..1538170 | + | 714 | WP_004723358.1 | RNA chaperone ProQ | - |
| ND437_RS07110 (ND437_07110) | 1538190..1540229 | + | 2040 | WP_004723357.1 | carboxy terminal-processing peptidase | - |
| ND437_RS07115 (ND437_07115) | 1540540..1541424 | + | 885 | WP_004723356.1 | protease HtpX | - |
| ND437_RS07120 (ND437_07120) | 1541500..1541643 | + | 144 | Protein_1377 | transposase | - |
| ND437_RS07125 (ND437_07125) | 1541706..1543091 | - | 1386 | WP_038242721.1 | MFS transporter | - |
| ND437_RS07130 (ND437_07130) | 1543385..1544176 | + | 792 | WP_038276006.1 | DNA-binding transcriptional regulator KdgR | - |
| ND437_RS07135 (ND437_07135) | 1544470..1545300 | + | 831 | WP_038242778.1 | N-acetylmuramoyl-L-alanine amidase | - |
| ND437_RS07140 (ND437_07140) | 1545564..1546955 | - | 1392 | WP_038242718.1 | L-cystine transporter | - |
| ND437_RS07145 (ND437_07145) | 1547155..1547703 | - | 549 | WP_004717777.1 | metal-dependent hydrolase | - |
| ND437_RS07150 (ND437_07150) | 1548182..1548847 | - | 666 | WP_004717775.1 | hexitol phosphatase HxpB | - |
| ND437_RS07155 (ND437_07155) | 1549150..1549704 | + | 555 | WP_004717774.1 | YniB family protein | - |
| ND437_RS07160 (ND437_07160) | 1549800..1550663 | - | 864 | WP_004717772.1 | fructosamine kinase family protein | - |
| ND437_RS07165 (ND437_07165) | 1550854..1551747 | - | 894 | WP_038242715.1 | metal ABC transporter permease | - |
| ND437_RS07170 (ND437_07170) | 1551744..1552625 | - | 882 | WP_004717767.1 | iron/manganese ABC transporter permease subunit YfeC | - |
| ND437_RS07175 (ND437_07175) | 1552625..1553515 | - | 891 | WP_038242713.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| ND437_RS07180 (ND437_07180) | 1553512..1554543 | - | 1032 | WP_038242712.1 | Periplasmic chelated iron-binding protein YfeA | VF |
| ND437_RS07185 (ND437_07185) | 1554685..1555341 | + | 657 | WP_038242711.1 | Endo-type membrane-bound lytic murein transglycosylase A | VF |
| ND437_RS07190 (ND437_07190) | 1555486..1556166 | - | 681 | WP_004717760.1 | MarC family NAAT transporter | - |
| ND437_RS07195 (ND437_07195) | 1556438..1556689 | + | 252 | WP_004717757.1 | hypothetical protein | - |
| ND437_RS07200 (ND437_07200) | 1557627..1557986 | - | 360 | WP_038275998.1 | hypothetical protein | - |
| ND437_RS07205 (ND437_07205) | 1558244..1558477 | + | 234 | WP_145497084.1 | hypothetical protein | - |
| ND437_RS07210 (ND437_07210) | 1558762..1558974 | - | 213 | WP_004717749.1 | KTSC domain-containing protein | - |
| ND437_RS07215 (ND437_07215) | 1559520..1559849 | - | 330 | WP_038242705.1 | DUF1622 domain-containing protein | - |
| ND437_RS07220 (ND437_07220) | 1560368..1562296 | + | 1929 | WP_004717744.1 | threonine--tRNA ligase | - |
| ND437_RS07225 (ND437_07225) | 1562300..1562851 | + | 552 | WP_002227898.1 | translation initiation factor IF-3 | - |
| ND437_RS07230 (ND437_07230) | 1562950..1563147 | + | 198 | WP_002211834.1 | 50S ribosomal protein L35 | - |
| ND437_RS07235 (ND437_07235) | 1563185..1563541 | + | 357 | WP_004717737.1 | 50S ribosomal protein L20 | - |
| ND437_RS07240 (ND437_07240) | 1564022..1565005 | + | 984 | WP_004717736.1 | phenylalanine--tRNA ligase subunit alpha | - |
| ND437_RS07245 (ND437_07245) | 1565020..1567407 | + | 2388 | WP_145497082.1 | phenylalanine--tRNA ligase subunit beta | - |
| ND437_RS07250 (ND437_07250) | 1567412..1567708 | + | 297 | WP_004717732.1 | integration host factor subunit alpha | - |
| ND437_RS07255 (ND437_07255) | 1567890..1568414 | + | 525 | WP_004717729.1 | hypothetical protein | - |
| ND437_RS07260 (ND437_07260) | 1568429..1568668 | - | 240 | WP_048619986.1 | ogr/Delta-like zinc finger family protein | - |
| ND437_RS07265 (ND437_07265) | 1568741..1569514 | - | 774 | Protein_1406 | contractile injection system protein, VgrG/Pvc8 family | - |
| ND437_RS07270 (ND437_07270) | 1569451..1570101 | - | 651 | WP_186368403.1 | phage baseplate assembly protein V | - |
| ND437_RS07275 (ND437_07275) | 1570224..1570811 | - | 588 | Protein_1408 | Fic family protein | - |
| ND437_RS07280 (ND437_07280) | 1570808..1571008 | - | 201 | WP_230596566.1 | DUF2559 family protein | - |
| ND437_RS07285 (ND437_07285) | 1571090..1571707 | - | 618 | WP_248577773.1 | phage virion morphogenesis protein | - |
| ND437_RS07290 (ND437_07290) | 1571760..1572221 | - | 462 | WP_234056478.1 | phage tail protein | - |
| ND437_RS07295 (ND437_07295) | 1572208..1572369 | - | 162 | Protein_1412 | Rz1-like lysis system protein LysC | - |
| ND437_RS07300 (ND437_07300) | 1572309..1572638 | - | 330 | WP_234057220.1 | DNA-binding protein | - |
| ND437_RS07305 (ND437_07305) | 1572692..1573190 | + | 499 | Protein_1414 | hypothetical protein ; Integrase | Integrase |
| ND437_RS07310 (ND437_07310) | 1573251..1573949 | + | 699 | WP_234049418.1 | Eco47II family restriction endonuclease | - |
| ND437_RS07315 (ND437_07315) | 1574034..1575281 | + | 1248 | WP_096823424.1 | IS607 family transposase ISCbo6 | Transposase |
| ND437_RS07320 (ND437_07320) | 1575599..1576606 | + | 1008 | WP_004717712.1 | Vitamin B12 import system permease protein BtuC | VF |
| ND437_RS07325 (ND437_07325) | 1576769..1577530 | + | 762 | WP_004717710.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| ND437_RS07330 (ND437_07330) | 1577912..1579066 | + | 1155 | WP_004717707.1 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | VF |
| ND437_RS07335 (ND437_07335) | 1579053..1580033 | + | 981 | WP_038242690.1 | Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase | VF |
| ND437_RS07340 (ND437_07340) | 1580033..1582036 | + | 2004 | WP_267263296.1 | Bifunctional polymyxin resistance protein ArnA | VF |
| ND437_RS07345 (ND437_07345) | 1582033..1582935 | + | 903 | WP_248578623.1 | 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase | - |
| ND437_RS07350 (ND437_07350) | 1582932..1584599 | + | 1668 | WP_248578622.1 | lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase | - |
| ND437_RS07355 (ND437_07355) | 1584596..1584940 | + | 345 | WP_038242682.1 | 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE | - |
| ND437_RS07360 (ND437_07360) | 1584937..1585317 | + | 381 | WP_038242681.1 | 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF | - |
| ND437_RS07365 (ND437_07365) | 1585462..1585926 | + | 465 | WP_004717693.1 | Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase | VF |
| ND437_RS07370 (ND437_07370) | 1585989..1587005 | + | 1017 | WP_071706605.1 | lipoate--protein ligase A | - |
| ND437_RS07375 (ND437_07375) | 1587005..1588447 | + | 1443 | WP_004717692.1 | YdiU family protein | - |
| ND437_RS07380 (ND437_07380) | 1588525..1589337 | - | 813 | WP_080547521.1 | heme ABC transporter ATP-binding protein | - |
| ND437_RS07385 (ND437_07385) | 1589330..1590334 | - | 1005 | WP_038242677.1 | iron ABC transporter permease | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|