MGE detailed information
MGE type: Conjugative plasmid MGE length: 112938 bp
Accession: NZ_CP095790 Location: 1..112938 Organism: Escherichia fergusonii strain EF21JD053 Replicon: plasmid pJD053-112K
Accession: NZ_CP095790 Location: 1..112938 Organism: Escherichia fergusonii strain EF21JD053 Replicon: plasmid pJD053-112K
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MYB88_RS23915 (1) | 1..858 | + | 858 | WP_000130961.1 | incFII family plasmid replication initiator RepA | - |
| MYB88_RS23920 (1769) | 1769..1906 | + | 138 | Protein_1 | ribbon-helix-helix domain-containing protein | - |
| MYB88_RS23925 (1910) | 1910..2149 | + | 240 | WP_228932009.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| MYB88_RS23930 (2344) | 2344..3552 | - | 1209 | WP_000198526.1 | IS91 family transposase ISSbo1 | Transposase |
| MYB88_RS23935 (3533) | 3533..3610 | - | 78 | Protein_4 | hypothetical protein | - |
| MYB88_RS23940 (3593) | 3593..3855 | + | 263 | Protein_5 | conjugal transfer protein TraA | - |
| MYB88_RS23945 (3944) | 3944..4812 | + | 869 | Protein_6 | IS3 family transposase IS2 | Transposase |
| MYB88_RS23950 (4884) | 4884..5539 | + | 656 | Protein_7 | transposase | - |
| MYB88_RS23955 (5535) | 5535..5627 | + | 93 | Protein_8 | IS66 family insertion sequence element accessory protein TnpB | - |
| MYB88_RS23960 (5799) | 5799..6998 | - | 1200 | WP_000948429.1 | IS91 family transposase ISSbo1 | Transposase |
| MYB88_RS23965 (7008) | 7008..7196 | - | 189 | WP_000957857.1 | hypothetical protein | - |
| MYB88_RS23970 (7318) | 7318..7576 | + | 259 | Protein_11 | IS66 family insertion sequence element accessory protein TnpB | - |
| MYB88_RS23975 (7566) | 7566..7948 | + | 383 | Protein_12 | transposase | - |
| MYB88_RS23980 (8595) | 8595..9598 | + | 1004 | Protein_13 | IS110 family transposase ISSfl8 | Transposase |
| MYB88_RS23985 (10047) | 10047..10268 | + | 222 | Protein_14 | IS66 family insertion sequence element accessory protein TnpB | - |
| MYB88_RS23990 (10288) | 10288..10485 | + | 198 | Protein_15 | IS66 family transposase ISCro1 | Transposase |
| MYB88_RS23995 (10507) | 10507..10640 | - | 134 | Protein_16 | IS66 family transposase ISCro1 | Transposase |
| MYB88_RS24000 (10726) | 10726..12078 | - | 1353 | WP_223667184.1 | hypothetical protein | - |
| MYB88_RS24005 (12387) | 12387..12716 | - | 330 | Protein_18 | integrase core domain-containing protein | - |
| MYB88_RS24010 (12811) | 12811..13005 | + | 195 | Protein_19 | plasmid segregation protein ParM | - |
| MYB88_RS24015 (13032) | 13032..13823 | - | 792 | Protein_20 | IS630 family transposase | - |
| MYB88_RS24020 (14289) | 14289..19289 | + | 5001 | WP_247859142.1 | Invasin | VF |
| MYB88_RS24025 (19586) | 19586..19771 | + | 186 | WP_000264903.1 | hypothetical protein | - |
| MYB88_RS24030 (19791) | 19791..20060 | + | 270 | Protein_23 | DUF2913 family protein | - |
| MYB88_RS24035 (19984) | 19984..20166 | + | 183 | WP_001246914.1 | hypothetical protein | - |
| MYB88_RS24040 (21173) | 21173..22399 | + | 1227 | WP_001119619.1 | phosphoadenosine phosphosulfate reductase | - |
| MYB88_RS24045 (22384) | 22384..23037 | + | 654 | WP_000528462.1 | ParB N-terminal domain-containing protein | - |
| MYB88_RS24050 (23182) | 23182..25377 | - | 2196 | WP_148713339.1 | Ferric aerobactin receptor | VF |
| MYB88_RS24055 (25383) | 25383..26720 | - | 1338 | WP_000710669.1 | L-lysine N6-monooxygenase | VF |
| MYB88_RS24060 (26717) | 26717..28459 | - | 1743 | WP_001015706.1 | Aerobactin synthase | VF |
| MYB88_RS24065 (28459) | 28459..29406 | - | 948 | WP_001287504.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| MYB88_RS24070 (29407) | 29407..31131 | - | 1725 | WP_002433343.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| MYB88_RS24075 (31267) | 31267..32460 | + | 1194 | WP_001134631.1 | MFS transporter | - |
| MYB88_RS24080 (32685) | 32685..35690 | - | 3006 | WP_024257006.1 | Invasin | VF |
| MYB88_RS24085 (35723) | 35723..35986 | - | 264 | Protein_34 | IS66 family transposase ISCro1 | Transposase |
| MYB88_RS24090 (36006) | 36006..36353 | - | 348 | WP_000624596.1 | IS66 family transposase ISCro1 | Transposase |
| MYB88_RS24095 (36353) | 36353..37003 | - | 651 | WP_000993941.1 | IS66 family transposase IS679 | Transposase |
| MYB88_RS24100 (37090) | 37090..37435 | + | 346 | Protein_37 | IS4/IS5 family transposase | - |
| MYB88_RS24105 (37713) | 37713..38582 | - | 870 | Protein_38 | IS110 family transposase ISEc66 | Transposase |
| MYB88_RS24110 (38736) | 38736..39227 | + | 492 | Protein_39 | IS4 family transposase ISSfl1 | Transposase |
| MYB88_RS24115 (39275) | 39275..39431 | - | 157 | Protein_40 | hypothetical protein | - |
| MYB88_RS24120 (39842) | 39842..39961 | - | 120 | Protein_41 | IS4 family transposase ISLpn6 | Transposase |
| MYB88_RS24125 (40016) | 40016..40396 | + | 381 | WP_001132570.1 | colicin-like pore-forming protein | - |
| MYB88_RS24130 (40414) | 40414..40761 | - | 348 | WP_000762575.1 | colicin E1 family microcin immunity protein | - |
| MYB88_RS24135 (40883) | 40883..41236 | + | 354 | WP_000142422.1 | DUF6404 family protein | - |
| MYB88_RS24140 (41308) | 41308..41576 | - | 269 | Protein_45 | hypothetical protein | - |
| MYB88_RS24145 (41573) | 41573..41833 | - | 261 | WP_000343091.1 | hypothetical protein | - |
| MYB88_RS24150 (42450) | 42450..42863 | + | 414 | WP_000465034.1 | hypothetical protein | - |
| MYB88_RS24155 (42865) | 42865..43647 | + | 783 | WP_058799171.1 | site-specific integrase | - |
| MYB88_RS24160 (43778) | 43778..44053 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| MYB88_RS24165 (44047) | 44047..44691 | - | 645 | WP_000633913.1 | division plane positioning ATPase MipZ | - |
| MYB88_RS24170 (44920) | 44920..45891 | + | 972 | WP_001103691.1 | plasmid segregation protein ParM | - |
| MYB88_RS24175 (45896) | 45896..46288 | + | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| MYB88_RS24180 (46293) | 46293..47564 | - | 1272 | WP_058799170.1 | Y-family DNA polymerase | - |
| MYB88_RS24185 (47564) | 47564..48001 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| MYB88_RS24190 (47998) | 47998..48246 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| MYB88_RS24195 (48664) | 48664..49566 | + | 903 | WP_223684200.1 | DUF1281 domain-containing protein | - |
| MYB88_RS24200 (49563) | 49563..49874 | + | 312 | WP_031942433.1 | hypothetical protein | - |
| MYB88_RS24205 (49950) | 49950..50633 | + | 684 | WP_000086147.1 | DNA methylase | - |
| MYB88_RS24210 (50634) | 50634..50855 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| MYB88_RS24215 (50869) | 50869..51303 | + | 435 | WP_000274500.1 | DUF1380 family protein | - |
| MYB88_RS24220 (51349) | 51349..52125 | + | 777 | WP_052929989.1 | hypothetical protein | - |
| MYB88_RS24225 (52541) | 52541..52966 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| MYB88_RS24230 (53013) | 53013..53435 | + | 423 | WP_000271744.1 | DUF1380 family protein | - |
| MYB88_RS24235 (53432) | 53432..53623 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| MYB88_RS24240 (53901) | 53901..55568 | - | 1668 | WP_001762494.1 | group II intron reverse transcriptase/maturase | - |
| MYB88_RS24245 (56718) | 56718..57152 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| MYB88_RS24250 (57244) | 57244..57510 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| MYB88_RS24255 (57575) | 57575..58489 | + | 915 | WP_000038401.1 | Recombination-promoting nuclease RpnA | VF |
| MYB88_RS24260 (58489) | 58489..58734 | + | 246 | WP_001260884.1 | hypothetical protein | - |
| MYB88_RS24265 (58765) | 58765..59016 | - | 252 | WP_000148286.1 | helix-turn-helix transcriptional regulator | - |
| MYB88_RS24270 (59596) | 59596..60444 | + | 849 | WP_125282800.1 | DUF4942 domain-containing protein | - |
| MYB88_RS24275 (60530) | 60530..60865 | - | 336 | WP_024133211.1 | hypothetical protein | - |
| MYB88_RS24280 (61100) | 61100..61432 | + | 333 | WP_001284001.1 | IncI1-type relaxosome accessory protein NikA | - |
| MYB88_RS24285 (61443) | 61443..64142 | + | 2700 | WP_247859141.1 | Protein TraI | Relaxase |
| MYB88_RS24290 (64179) | 64179..66470 | - | 2292 | WP_001289275.1 | F-type conjugative transfer protein TrbC | - |
| MYB88_RS24295 (66463) | 66463..67533 | - | 1071 | WP_000151576.1 | IncI1-type conjugal transfer protein TrbB | - |
| MYB88_RS24300 (67552) | 67552..68760 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (68940) | 68940..69002 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (68940) | 68940..69002 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (68940) | 68940..69002 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (68940) | 68940..69002 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| MYB88_RS24305 (69052) | 69052..69204 | + | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| MYB88_RS24310 (69276) | 69276..69527 | - | 252 | WP_001291965.1 | hypothetical protein | - |
| MYB88_RS25575 (70027) | 70027..70122 | + | 96 | WP_001303310.1 | DinQ-like type I toxin DqlB | - |
| MYB88_RS24320 (70187) | 70187..70324 | - | 138 | WP_047088497.1 | hypothetical protein | - |
| MYB88_RS24325 (70369) | 70369..71595 | - | 1227 | WP_024186316.1 | IS200-IS605 family transposase ISSen6 | Transposase |
| MYB88_RS24330 (71654) | 71654..72058 | + | 405 | WP_001175009.1 | IS200-IS605 family transposase ISSen6 | Transposase |
| MYB88_RS24335 (72390) | 72390..72599 | - | 210 | WP_032178830.1 | hemolysin expression modulator Hha | - |
| MYB88_RS24340 (72697) | 72697..73359 | - | 663 | WP_000644794.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| MYB88_RS24345 (73430) | 73430..75598 | - | 2169 | WP_000698368.1 | DotA/TraY family protein | - |
| MYB88_RS24350 (75695) | 75695..76279 | - | 585 | WP_001037985.1 | IncI1-type conjugal transfer protein TraX | - |
| MYB88_RS24355 (76308) | 76308..77510 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| MYB88_RS24360 (77477) | 77477..78091 | - | 615 | WP_000337400.1 | IncI1-type conjugal transfer protein TraV | - |
| MYB88_RS24365 (78091) | 78091..81135 | - | 3045 | WP_001024780.1 | IncI1-type conjugal transfer protein TraU | - |
| MYB88_RS24370 (81225) | 81225..82025 | - | 801 | WP_024126043.1 | IncI1-type conjugal transfer protein TraT | - |
| MYB88_RS24375 (82009) | 82009..82197 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| MYB88_RS24380 (82261) | 82261..82665 | - | 405 | WP_000086958.1 | IncI1-type conjugal transfer protein TraR | - |
| MYB88_RS24385 (82716) | 82716..83243 | - | 528 | Protein_94 | conjugal transfer protein TraQ | - |
| MYB88_RS24390 (83243) | 83243..83947 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| MYB88_RS24395 (83947) | 83947..85236 | - | 1290 | WP_001272003.1 | conjugal transfer protein TraO | - |
| MYB88_RS24400 (85239) | 85239..86222 | - | 984 | WP_001191877.1 | hypothetical protein | VF |
| MYB88_RS24405 (86233) | 86233..86925 | - | 693 | WP_000138550.1 | DotI/IcmL family type IV secretion protein | - |
| MYB88_RS24410 (86922) | 86922..87269 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| MYB88_RS24415 (87287) | 87287..91054 | - | 3768 | WP_001141527.1 | DUF5710 domain-containing protein | - |
| MYB88_RS24420 (91144) | 91144..91695 | - | 552 | WP_000014583.1 | Phospholipase D | VF |
| MYB88_RS24425 (91710) | 91710..92000 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| MYB88_RS24430 (91997) | 91997..93145 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| MYB88_RS24435 (93142) | 93142..93960 | - | 819 | WP_000646098.1 | hypothetical protein | VF |
| MYB88_RS24440 (93957) | 93957..94415 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| MYB88_RS24445 (94810) | 94810..95394 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| MYB88_RS24450 (95454) | 95454..96656 | - | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| MYB88_RS24455 (96741) | 96741..97565 | - | 825 | WP_001238939.1 | conjugal transfer protein TraE | - |
| MYB88_RS24460 (97716) | 97716..98870 | - | 1155 | WP_001139957.1 | site-specific integrase | - |
| MYB88_RS24465 (98869) | 98869..99186 | + | 318 | WP_001558195.1 | hypothetical protein | - |
| MYB88_RS24470 (99642) | 99642..99890 | - | 249 | WP_001349157.1 | hypothetical protein | - |
| MYB88_RS24475 (99976) | 99976..101514 | - | 1539 | WP_001547431.1 | IS66 family transposase ISEc8 | Transposase |
| MYB88_RS24480 (101564) | 101564..101911 | - | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| MYB88_RS24485 (101908) | 101908..102288 | - | 381 | WP_072157534.1 | IS66 family transposase ISEc8 | Transposase |
| MYB88_RS24490 (102381) | 102381..103196 | - | 816 | Protein_115 | IS4 family transposase ISSfl9 | Transposase |
| MYB88_RS24495 (103235) | 103235..103960 | + | 726 | WP_104920585.1 | conjugal transfer complement resistance protein TraT | - |
| MYB88_RS24500 (104213) | 104213..106366 | + | 2154 | WP_104920584.1 | type IV conjugative transfer system coupling protein TraD | - |
| MYB88_RS24505 (106366) | 106366..110979 | + | 4614 | WP_104920583.1 | Multifunctional conjugation protein TraI | Relaxase |
| MYB88_RS24510 (111013) | 111013..111258 | + | 246 | Protein_119 | thermonuclease family protein | - |
| MYB88_RS24515 (111304) | 111304..111513 | + | 210 | WP_001302200.1 | hemolysin expression modulator Hha | - |
| MYB88_RS24520 (111551) | 111551..112141 | + | 591 | WP_104920582.1 | DUF2726 domain-containing protein | - |
| MYB88_RS24525 (112381) | 112381..112635 | + | 255 | WP_000083830.1 | replication regulatory protein RepA | - |
| MYB88_RS24530 (112742) | 112742..112926 | + | 185 | Protein_123 | protein CopA/IncA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|