MGE detailed information
MGE type: Prophage MGE length: 62345 bp
Accession: NZ_CP091147 Location: 1865097..1927441 Organism: Pseudomonas avellanae strain NCPPB 4222 Replicon: chromosome
Accession: NZ_CP091147 Location: 1865097..1927441 Organism: Pseudomonas avellanae strain NCPPB 4222 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L2Y01_RS08640 (L2Y01_08640) | 1861051..1861896 | + | 846 | WP_024420441.1 | S-formylglutathione hydrolase | - |
| L2Y01_RS08645 (L2Y01_08645) | 1861950..1862423 | + | 474 | WP_003377844.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| L2Y01_RS08650 (L2Y01_08650) | 1862420..1863478 | + | 1059 | WP_005616017.1 | tRNA pseudouridine(13) synthase TruD | - |
| L2Y01_RS08655 (L2Y01_08655) | 1863466..1864215 | + | 750 | WP_005616019.1 | 5'/3'-nucleotidase SurE | - |
| L2Y01_RS08660 (L2Y01_08660) | 1864257..1864892 | + | 636 | WP_003377850.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| L2Y01_RS08665 (L2Y01_08665) | 1865097..1865963 | + | 867 | WP_003377852.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| L2Y01_RS08670 (L2Y01_08670) | 1866068..1867075 | + | 1008 | WP_005616022.1 | RNA polymerase sigma factor RpoS | - |
| L2Y01_RS08675 (L2Y01_08675) | 1867616..1867939 | - | 324 | WP_005616024.1 | ferredoxin family protein | - |
| L2Y01_RS08680 (L2Y01_08680) | 1868186..1870753 | - | 2568 | WP_024420442.1 | DNA mismatch repair protein MutS | - |
| L2Y01_RS08685 (L2Y01_08685) | 1870927..1871541 | + | 615 | WP_249741644.1 | zeta toxin family protein | - |
| L2Y01_RS08690 (L2Y01_08690) | 1871610..1872359 | + | 750 | WP_249741601.1 | IS5 family transposase ISPa67 | Transposase |
| L2Y01_RS08695 (L2Y01_08695) | 1872703..1873689 | - | 987 | WP_024420584.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| L2Y01_RS08700 (L2Y01_08700) | 1873701..1873895 | - | 195 | WP_024420583.1 | DUF4224 domain-containing protein | - |
| L2Y01_RS08705 (L2Y01_08705) | 1873932..1874666 | - | 735 | WP_024420582.1 | metallophosphoesterase | - |
| L2Y01_RS08710 (L2Y01_08710) | 1874792..1875004 | + | 213 | WP_024420581.1 | hypothetical protein | - |
| L2Y01_RS08715 (L2Y01_08715) | 1875067..1875327 | + | 261 | WP_044424829.1 | hypothetical protein | - |
| L2Y01_RS08720 (L2Y01_08720) | 1875728..1877041 | - | 1314 | WP_029768937.1 | site-specific DNA-methyltransferase | - |
| L2Y01_RS08725 (L2Y01_08725) | 1877359..1877658 | + | 300 | WP_249741645.1 | hypothetical protein | - |
| L2Y01_RS08730 (L2Y01_08730) | 1877765..1878577 | - | 813 | WP_024420193.1 | DUF2303 family protein | - |
| L2Y01_RS08735 (L2Y01_08735) | 1878607..1878954 | - | 348 | WP_002553171.1 | hypothetical protein | - |
| L2Y01_RS08740 (L2Y01_08740) | 1879043..1879630 | - | 588 | WP_024420194.1 | hypothetical protein | - |
| L2Y01_RS08745 (L2Y01_08745) | 1879630..1879968 | - | 339 | WP_024420195.1 | hypothetical protein | - |
| L2Y01_RS08750 (L2Y01_08750) | 1880407..1880808 | - | 402 | WP_024420196.1 | helix-turn-helix transcriptional regulator | - |
| L2Y01_RS08755 (L2Y01_08755) | 1881160..1881687 | - | 528 | WP_029768612.1 | DUF4410 domain-containing protein | - |
| L2Y01_RS08760 (L2Y01_08760) | 1881719..1882375 | - | 657 | WP_024420197.1 | LexA family transcriptional regulator | - |
| L2Y01_RS08765 (L2Y01_08765) | 1882465..1882674 | + | 210 | WP_024420198.1 | hypothetical protein | - |
| L2Y01_RS08770 (L2Y01_08770) | 1882872..1883132 | - | 261 | WP_024420199.1 | hypothetical protein | - |
| L2Y01_RS08775 (L2Y01_08775) | 1883335..1884111 | + | 777 | WP_044424751.1 | helix-turn-helix domain-containing protein | - |
| L2Y01_RS08780 (L2Y01_08780) | 1884108..1884779 | + | 672 | WP_024420201.1 | replication protein P | - |
| L2Y01_RS08785 (L2Y01_08785) | 1884776..1885072 | + | 297 | WP_024420202.1 | DUF1364 domain-containing protein | - |
| L2Y01_RS08790 (L2Y01_08790) | 1885069..1885500 | + | 432 | WP_024420203.1 | VRR-NUC domain-containing protein | - |
| L2Y01_RS08795 (L2Y01_08795) | 1885497..1886777 | + | 1281 | WP_024420204.1 | Prophage integrase IntA ; Integrase | Integrase |
| L2Y01_RS08800 (L2Y01_08800) | 1886797..1887120 | + | 324 | WP_081681487.1 | hypothetical protein | - |
| L2Y01_RS08805 (L2Y01_08805) | 1887124..1887471 | + | 348 | WP_081681488.1 | antiterminator Q family protein | - |
| L2Y01_RS08810 (L2Y01_08810) | 1887525..1888226 | + | 702 | WP_152644175.1 | hypothetical protein | - |
| L2Y01_RS08815 (L2Y01_08815) | 1888215..1889231 | - | 1017 | WP_005614760.1 | IS30 family transposase ISPsy38 | Transposase |
| L2Y01_RS08820 (L2Y01_08820) | 1889559..1889876 | + | 318 | WP_024421276.1 | phage holin, lambda family | - |
| L2Y01_RS08825 (L2Y01_08825) | 1889873..1891735 | + | 1863 | WP_024420972.1 | DUF1983 domain-containing protein | - |
| L2Y01_RS08830 (L2Y01_08830) | 1891744..1892073 | + | 330 | WP_044424913.1 | hypothetical protein | - |
| L2Y01_RS08835 (L2Y01_08835) | 1892094..1893074 | + | 981 | WP_161468905.1 | IS5 family transposase ISPa41 | Transposase |
| L2Y01_RS08840 (L2Y01_08840) | 1893222..1893908 | + | 687 | WP_024420624.1 | hypothetical protein | - |
| L2Y01_RS08845 (L2Y01_08845) | 1893934..1895037 | + | 1104 | WP_005618292.1 | hypothetical protein | - |
| L2Y01_RS08850 (L2Y01_08850) | 1895037..1895351 | + | 315 | WP_024420623.1 | hypothetical protein | - |
| L2Y01_RS08855 (L2Y01_08855) | 1895365..1895733 | + | 369 | WP_005618291.1 | hypothetical protein | - |
| L2Y01_RS08860 (L2Y01_08860) | 1896029..1896562 | + | 534 | WP_024420622.1 | glycoside hydrolase family 19 protein | - |
| L2Y01_RS08865 (L2Y01_08865) | 1896559..1896933 | + | 375 | WP_005618289.1 | hypothetical protein | - |
| L2Y01_RS08870 (L2Y01_08870) | 1896930..1897187 | + | 258 | WP_024420621.1 | hypothetical protein | - |
| L2Y01_RS08875 (L2Y01_08875) | 1897205..1897609 | + | 405 | WP_152522161.1 | hypothetical protein | - |
| L2Y01_RS08880 (L2Y01_08880) | 1897579..1897653 | + | 75 | WP_122349223.1 | hypothetical protein | - |
| L2Y01_RS08885 (L2Y01_08885) | 1897632..1898339 | - | 708 | WP_249741647.1 | hypothetical protein | - |
| L2Y01_RS08890 (L2Y01_08890) | 1899108..1899608 | + | 501 | WP_005616028.1 | nicotinamide-nucleotide amidohydrolase family protein | - |
| L2Y01_RS08895 (L2Y01_08895) | 1899702..1900766 | + | 1065 | WP_004397594.1 | recombinase RecA | - |
| L2Y01_RS08900 (L2Y01_08900) | 1900772..1901239 | + | 468 | WP_005736185.1 | recombination regulator RecX | - |
| L2Y01_RS08905 (L2Y01_08905) | 1901244..1902365 | - | 1122 | WP_005616030.1 | TIGR00730 family Rossman fold protein | - |
| L2Y01_RS08910 (L2Y01_08910) | 1902557..1902973 | - | 417 | WP_004397588.1 | quorum-sensing-regulated virulence factor family protein | - |
| L2Y01_RS08915 (L2Y01_08915) | 1903352..1904062 | + | 711 | WP_005616033.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| L2Y01_RS08920 (L2Y01_08920) | 1904315..1904962 | + | 648 | WP_005616037.1 | Transcriptional regulatory protein DegU | VF |
| L2Y01_RS08925 (L2Y01_08925) | 1905047..1905412 | + | 366 | WP_004397580.1 | diacylglycerol kinase | - |
| L2Y01_RS08930 (L2Y01_08930) | 1905414..1906340 | - | 927 | WP_005736179.1 | LysR family transcriptional regulator | - |
| L2Y01_RS08935 (L2Y01_08935) | 1906464..1907243 | + | 780 | WP_005616041.1 | ferredoxin-NADP reductase | - |
| L2Y01_RS08940 (L2Y01_08940) | 1907323..1908015 | - | 693 | WP_024420376.1 | tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO | - |
| L2Y01_RS08945 (L2Y01_08945) | 1908029..1908490 | - | 462 | WP_004397572.1 | DUF1456 family protein | - |
| L2Y01_RS08950 (L2Y01_08950) | 1908573..1909283 | - | 711 | WP_004397570.1 | rRNA pseudouridine synthase | - |
| L2Y01_RS08955 (L2Y01_08955) | 1909377..1909817 | - | 441 | WP_005616045.1 | GNAT family N-acetyltransferase | - |
| L2Y01_RS08960 (L2Y01_08960) | 1909920..1911263 | - | 1344 | WP_004397566.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| L2Y01_RS08965 (L2Y01_08965) | 1911550..1911816 | + | 267 | WP_024421275.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| L2Y01_RS08970 (L2Y01_08970) | 1911810..1912826 | - | 1017 | WP_005614760.1 | IS30 family transposase ISPsy38 | Transposase |
| L2Y01_RS08975 (L2Y01_08975) | 1912934..1913587 | + | 654 | WP_024421027.1 | type III effector HopAZ1 | - |
| L2Y01_RS08980 (L2Y01_08980) | 1913605..1913871 | - | 267 | WP_235390788.1 | hypothetical protein | - |
| L2Y01_RS08985 (L2Y01_08985) | 1914233..1914544 | + | 312 | WP_007247668.1 | Arc family DNA-binding protein | Antitoxin Detail |
| L2Y01_RS08990 (L2Y01_08990) | 1914541..1914972 | + | 432 | WP_024420983.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| L2Y01_RS08995 (L2Y01_08995) | 1915013..1915646 | + | 634 | Protein_1780 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| L2Y01_RS09000 (L2Y01_09000) | 1915921..1916790 | + | 870 | WP_229687600.1 | AvrD family protein | - |
| L2Y01_RS28475 | 1916783..1916962 | + | 180 | WP_259645586.1 | AvrD family protein | - |
| L2Y01_RS09005 (L2Y01_09005) | 1917304..1917864 | + | 561 | WP_249741648.1 | histidine phosphatase family protein | - |
| L2Y01_RS09010 (L2Y01_09010) | 1918093..1919160 | + | 1068 | WP_032687125.1 | IS630 family transposase ISPsy32 | Transposase |
| L2Y01_RS09015 (L2Y01_09015) | 1919587..1920507 | + | 921 | WP_005620530.1 | TauD/TfdA family dioxygenase | - |
| L2Y01_RS09020 (L2Y01_09020) | 1920525..1921559 | + | 1035 | WP_024420235.1 | sulfotransferase | - |
| L2Y01_RS09025 (L2Y01_09025) | 1921600..1922802 | + | 1203 | WP_024421074.1 | aspartate aminotransferase family protein | - |
| L2Y01_RS09030 (L2Y01_09030) | 1923163..1923495 | + | 333 | WP_004667075.1 | 2OG-Fe(II) oxygenase family protein | - |
| L2Y01_RS09035 (L2Y01_09035) | 1923495..1924073 | + | 579 | WP_249741649.1 | AAA family ATPase | - |
| L2Y01_RS09040 (L2Y01_09040) | 1924563..1924922 | + | 360 | WP_005621010.1 | IS66 family transposase ISPsy34 | Transposase |
| L2Y01_RS09045 (L2Y01_09045) | 1925146..1926645 | + | 1500 | WP_103356851.1 | IS21 family transposase ISPsy20 | Transposase |
| L2Y01_RS09050 (L2Y01_09050) | 1926638..1927441 | + | 804 | WP_003417182.1 | IS21 family transposase ISPsy20 | Transposase |
| L2Y01_RS09055 (L2Y01_09055) | 1927625..1929598 | + | 1974 | WP_024420185.1 | TonB-dependent receptor | - |
| L2Y01_RS09060 (L2Y01_09060) | 1929676..1930116 | - | 441 | Protein_1794 | helix-turn-helix domain-containing protein | - |
| L2Y01_RS09065 (L2Y01_09065) | 1930102..1930314 | + | 213 | Protein_1795 | isochorismatase family protein | - |
| L2Y01_RS09070 (L2Y01_09070) | 1930513..1930974 | - | 462 | WP_005616660.1 | DUF393 domain-containing protein | - |
| L2Y01_RS09075 (L2Y01_09075) | 1931090..1931902 | - | 813 | WP_005616661.1 | oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|