MGE detailed information
MGE type: Conjugative plasmid MGE length: 90380 bp
Accession: NZ_CP090538 Location: 1..90380 Organism: Salmonella enterica strain 2016089-SE Replicon: plasmid p3
Accession: NZ_CP090538 Location: 1..90380 Organism: Salmonella enterica strain 2016089-SE Replicon: plasmid p3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L0F58_RS25030 (L0F58_25030) | 542..940 | + | 399 | WP_000088813.1 | hypothetical protein | - |
| L0F58_RS25035 (L0F58_25035) | 997..1149 | + | 153 | Protein_2 | TraS | - |
| L0F58_RS25040 (L0F58_25040) | 1163..1981 | + | 819 | WP_000753550.1 | hypothetical protein | - |
| L0F58_RS25045 (L0F58_25045) | 2276..5320 | + | 3045 | WP_013307872.1 | conjugal transfer nucleotide-binding protein | - |
| L0F58_RS25050 (L0F58_25050) | 5320..5940 | + | 621 | WP_000286854.1 | hypothetical protein | - |
| L0F58_RS25055 (L0F58_25055) | 5898..7103 | + | 1206 | WP_001189548.1 | conjugal transfer protein TraW | - |
| L0F58_RS25060 (L0F58_25060) | 7100..7669 | + | 570 | WP_000650752.1 | conjugal transfer protein TraX | - |
| L0F58_RS25065 (L0F58_25065) | 7744..9909 | + | 2166 | WP_000691808.1 | DotA/TraY family protein | - |
| L0F58_RS25070 (L0F58_25070) | 9997..10650 | + | 654 | WP_001401768.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| L0F58_RS25075 (L0F58_25075) | 10924..12510 | + | 1587 | WP_000004564.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| L0F58_RS25080 (L0F58_25080) | 12648..12800 | - | 153 | WP_001302699.1 | Hok/Gef family protein | - |
| L0F58_RS25085 (L0F58_25085) | 13130..13372 | + | 243 | WP_000650923.1 | hypothetical protein | - |
| L0F58_RS25090 (L0F58_25090) | 13663..14031 | + | 369 | WP_001345852.1 | hypothetical protein | - |
| L0F58_RS25095 (L0F58_25095) | 14035..14250 | + | 216 | WP_000266543.1 | hypothetical protein | - |
| L0F58_RS25100 (L0F58_25100) | 14448..15071 | - | 624 | WP_001155247.1 | helix-turn-helix domain-containing protein | - |
| L0F58_RS25105 (L0F58_25105) | 15230..15697 | + | 468 | WP_000598962.1 | thermonuclease family protein | - |
| L0F58_RS25110 (L0F58_25110) | 15847..16023 | + | 177 | WP_001054907.1 | hypothetical protein | - |
| L0F58_RS25115 (L0F58_25115) | 16086..16337 | - | 252 | WP_001081067.1 | DinQ-like type I toxin DqlB | - |
| L0F58_RS25120 (L0F58_25120) | 17014..18249 | + | 1236 | WP_224171288.1 | IncI1-type conjugal transfer protein TrbA | - |
| L0F58_RS25125 (L0F58_25125) | 18246..19370 | + | 1125 | WP_000152382.1 | DsbC family protein | - |
| L0F58_RS25130 (L0F58_25130) | 19351..21651 | + | 2301 | WP_013307869.1 | F-type conjugative transfer protein TrbC | - |
| L0F58_RS25135 (L0F58_25135) | 21872..24592 | - | 2721 | WP_000991405.1 | Protein TraI | Relaxase |
| L0F58_RS25140 (L0F58_25140) | 24604..24936 | - | 333 | WP_001291057.1 | plasmid mobilization protein MobA | - |
| L0F58_RS25145 (L0F58_25145) | 25169..25504 | + | 336 | WP_000157090.1 | hypothetical protein | - |
| L0F58_RS25150 (L0F58_25150) | 25590..26438 | - | 849 | WP_013307867.1 | DUF4942 domain-containing protein | - |
| L0F58_RS25155 (L0F58_25155) | 27018..27269 | + | 252 | WP_000148286.1 | helix-turn-helix transcriptional regulator | - |
| L0F58_RS25160 (L0F58_25160) | 27300..27545 | - | 246 | WP_001260882.1 | hypothetical protein | - |
| L0F58_RS25165 (L0F58_25165) | 27545..28435 | - | 891 | WP_000038343.1 | Recombination-promoting nuclease RpnA | VF |
| L0F58_RS25170 (L0F58_25170) | 28432..28821 | - | 390 | WP_000833767.1 | hypothetical protein | - |
| L0F58_RS25175 (L0F58_25175) | 28998..29264 | - | 267 | WP_001247860.1 | hypothetical protein | - |
| L0F58_RS25180 (L0F58_25180) | 29357..29791 | - | 435 | WP_000218862.1 | hypothetical protein | - |
| L0F58_RS25185 (L0F58_25185) | 30524..31024 | - | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| L0F58_RS25190 (L0F58_25190) | 31486..32082 | - | 597 | WP_001401763.1 | hypothetical protein | - |
| L0F58_RS25195 (L0F58_25195) | 32079..32798 | - | 720 | WP_001276268.1 | plasmid SOS inhibition protein A | - |
| L0F58_RS25200 (L0F58_25200) | 32795..33229 | - | 435 | WP_001578018.1 | conjugation system SOS inhibitor PsiB | - |
| L0F58_RS25205 (L0F58_25205) | 33284..35242 | - | 1959 | WP_064670764.1 | ParB/RepB/Spo0J family partition protein | - |
| L0F58_RS25210 (L0F58_25210) | 35301..35534 | - | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| L0F58_RS25215 (L0F58_25215) | 35592..36077 | - | 486 | WP_137543575.1 | single-stranded DNA-binding protein | - |
| L0F58_RS25220 (L0F58_25220) | 36227..38128 | - | 1902 | WP_000936285.1 | group II intron reverse transcriptase/maturase | - |
| L0F58_RS25225 (L0F58_25225) | 39149..39217 | + | 69 | Protein_40 | pilus protein | - |
| L0F58_RS25230 (L0F58_25230) | 39550..39741 | - | 192 | WP_001703906.1 | hypothetical protein | - |
| L0F58_RS25235 (L0F58_25235) | 39738..40160 | - | 423 | WP_013307864.1 | DUF1380 family protein | - |
| L0F58_RS25240 (L0F58_25240) | 40207..40632 | - | 426 | WP_001198874.1 | antirestriction protein | - |
| L0F58_RS25245 (L0F58_25245) | 41047..41822 | - | 776 | Protein_44 | hypothetical protein | - |
| L0F58_RS25250 (L0F58_25250) | 41867..42421 | - | 555 | WP_077635412.1 | DUF1380 family protein | - |
| L0F58_RS25255 (L0F58_25255) | 42315..42536 | - | 222 | WP_001104871.1 | hypothetical protein | - |
| L0F58_RS25260 (L0F58_25260) | 42537..43220 | - | 684 | WP_001401756.1 | DNA methylase | - |
| L0F58_RS25265 (L0F58_25265) | 43296..43601 | - | 306 | WP_013307862.1 | hypothetical protein | - |
| L0F58_RS25270 (L0F58_25270) | 43605..44507 | - | 903 | WP_064670763.1 | DUF1281 domain-containing protein | - |
| L0F58_RS25275 (L0F58_25275) | 44926..45174 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| L0F58_RS25280 (L0F58_25280) | 45171..45608 | + | 438 | WP_000109062.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| L0F58_RS25285 (L0F58_25285) | 45608..46879 | + | 1272 | WP_000457510.1 | Y-family DNA polymerase | - |
| L0F58_RS25290 (L0F58_25290) | 47091..47717 | + | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| L0F58_RS25295 (L0F58_25295) | 47714..48016 | + | 303 | WP_001245884.1 | hypothetical protein | - |
| L0F58_RS25300 (L0F58_25300) | 48311..49015 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| L0F58_RS25305 (L0F58_25305) | 49347..50693 | - | 1347 | WP_001132021.1 | protein YagA | - |
| L0F58_RS25310 (L0F58_25310) | 51047..51640 | + | 594 | WP_001401779.1 | ProQ/FINO family protein | - |
| L0F58_RS25315 (L0F58_25315) | 51922..52509 | - | 588 | WP_001418189.1 | serine acetyltransferase | - |
| L0F58_RS25320 (L0F58_25320) | 52854..53150 | + | 297 | WP_001419651.1 | hypothetical protein | - |
| L0F58_RS25325 (L0F58_25325) | 53346..53624 | - | 279 | WP_013009346.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| L0F58_RS25330 (L0F58_25330) | 53624..53893 | - | 270 | WP_000079932.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| L0F58_RS25335 (L0F58_25335) | 54804..55835 | - | 1032 | WP_000907881.1 | plasmid replication initiator RepA | - |
| L0F58_RS25340 (L0F58_25340) | 56673..57179 | + | 507 | WP_064670812.1 | transcription termination/antitermination NusG family protein | - |
| L0F58_RS25345 (L0F58_25345) | 57319..57981 | + | 663 | WP_005082527.1 | hypothetical protein | - |
| L0F58_RS25350 (L0F58_25350) | 58248..58391 | + | 144 | WP_072105535.1 | hypothetical protein | - |
| L0F58_RS25355 (L0F58_25355) | 58472..58714 | + | 243 | WP_001271734.1 | PilI type IV pilus biogenesis protein | - |
| L0F58_RS25360 (L0F58_25360) | 58831..59166 | + | 336 | WP_001335624.1 | hypothetical protein | - |
| L0F58_RS25365 (L0F58_25365) | 59393..60463 | + | 1071 | WP_000730430.1 | hypothetical protein | VF |
| L0F58_RS25370 (L0F58_25370) | 60467..60904 | + | 438 | WP_000539952.1 | hypothetical protein | VF |
| L0F58_RS25375 (L0F58_25375) | 60936..62555 | + | 1620 | WP_001035562.1 | Outer membrane lipoprotein BfpB | VF |
| L0F58_RS25380 (L0F58_25380) | 62576..63871 | + | 1296 | WP_000129885.1 | type 4b pilus protein PilO2 | - |
| L0F58_RS25385 (L0F58_25385) | 63861..64319 | + | 459 | WP_000095887.1 | hypothetical protein | VF |
| L0F58_RS25390 (L0F58_25390) | 64422..65930 | + | 1509 | WP_000880806.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| L0F58_RS25395 (L0F58_25395) | 65932..67026 | + | 1095 | WP_000697154.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| L0F58_RS25400 (L0F58_25400) | 67088..67624 | + | 537 | WP_000111521.1 | hypothetical protein | VF |
| L0F58_RS25405 (L0F58_25405) | 67669..68154 | + | 486 | WP_001080767.1 | hypothetical protein | VF |
| L0F58_RS25410 (L0F58_25410) | 68170..68796 | + | 627 | WP_013307883.1 | prepilin peptidase | - |
| L0F58_RS25415 (L0F58_25415) | 68814..70079 | + | 1266 | WP_013307882.1 | hypothetical protein | VF |
| L0F58_RS25420 (L0F58_25420) | 70456..70752 | + | 297 | WP_001014414.1 | phage tail protein | - |
| L0F58_RS25425 (L0F58_25425) | 70757..70996 | - | 240 | WP_000271302.1 | hypothetical protein | - |
| L0F58_RS25430 (L0F58_25430) | 71672..72796 | + | 1125 | WP_013307880.1 | site-specific integrase | - |
| L0F58_RS25435 (L0F58_25435) | 73009..73830 | + | 822 | WP_001681675.1 | hypothetical protein | - |
| L0F58_RS25440 (L0F58_25440) | 73932..75134 | + | 1203 | WP_013307879.1 | conjugal transfer protein TraF | - |
| L0F58_RS25445 (L0F58_25445) | 75238..75696 | + | 459 | WP_025750398.1 | DotD/TraH family lipoprotein | - |
| L0F58_RS25450 (L0F58_25450) | 75693..76529 | + | 837 | WP_000745049.1 | hypothetical protein | VF |
| L0F58_RS25455 (L0F58_25455) | 76513..77661 | + | 1149 | WP_013307876.1 | putative protein YggR | VF |
| L0F58_RS25460 (L0F58_25460) | 77658..77948 | + | 291 | WP_000817801.1 | IcmT/TraK family protein | - |
| L0F58_RS25465 (L0F58_25465) | 78360..79622 | + | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| L0F58_RS25470 (L0F58_25470) | 79872..80747 | + | 876 | WP_001617865.1 | Beta-lactamase CTX-M-97 | ARG |
| L0F58_RS25475 (L0F58_25475) | 80782..81237 | + | 456 | Protein_90 | IS5 family transposase | - |
| L0F58_RS25480 (L0F58_25480) | 81245..81826 | + | 582 | WP_025750394.1 | hypothetical protein | - |
| L0F58_RS25485 (L0F58_25485) | 82180..86241 | + | 4062 | WP_013307874.1 | DUF5710 domain-containing protein | - |
| L0F58_RS25490 (L0F58_25490) | 86258..86608 | + | 351 | WP_001056367.1 | hypothetical protein | - |
| L0F58_RS25495 (L0F58_25495) | 86620..87315 | + | 696 | WP_001681668.1 | DotI/IcmL family type IV secretion protein | - |
| L0F58_RS25500 (L0F58_25500) | 87326..88300 | + | 975 | WP_000547383.1 | hypothetical protein | VF |
| L0F58_RS25505 (L0F58_25505) | 88304..89641 | + | 1338 | WP_013307873.1 | conjugal transfer protein TraO | - |
| L0F58_RS25510 (L0F58_25510) | 89638..90351 | + | 714 | WP_000787004.1 | conjugal transfer protein TraP | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|