MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 133271 bp
Accession: NZ_CP090399 Location: 2287647..2420917 Organism: Vibrio cholerae strain PanChol Replicon: chromosome
Accession: NZ_CP090399 Location: 2287647..2420917 Organism: Vibrio cholerae strain PanChol Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZM82_RS10315 (LZM82_10315) | 2283453..2283938 | + | 486 | WP_001911251.1 | inosine/xanthosine triphosphatase | - |
| LZM82_RS10320 (LZM82_10320) | 2284016..2284327 | - | 312 | WP_000250616.1 | trp operon repressor | - |
| LZM82_RS10325 (LZM82_10325) | 2284382..2286328 | - | 1947 | WP_000197615.1 | murein transglycosylase | - |
| LZM82_RS10330 (LZM82_10330) | 2286690..2288357 | + | 1668 | WP_000852865.1 | energy-dependent translational throttle protein EttA | - |
| LZM82_RS10335 (LZM82_10335) | 2288528..2288899 | + | 372 | WP_000570783.1 | PilZ domain-containing protein | - |
| LZM82_RS10340 (LZM82_10340) | 2288966..2290093 | - | 1128 | WP_000257629.1 | T-protein | VF |
| LZM82_RS10345 (LZM82_10345) | 2290106..2291179 | - | 1074 | WP_000747937.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| LZM82_RS10350 (LZM82_10350) | 2291421..2293097 | + | 1677 | WP_000364257.1 | Sensor histidine kinase BtsS | VF |
| LZM82_RS10355 (LZM82_10355) | 2293107..2293820 | + | 714 | WP_000947378.1 | Transcriptional regulatory protein BtsR | VF |
| LZM82_RS10360 (LZM82_10360) | 2293847..2294839 | - | 993 | WP_000529115.1 | beta-N-acetylhexosaminidase | - |
| LZM82_RS10365 (LZM82_10365) | 2294945..2296057 | + | 1113 | WP_000840717.1 | anhydro-N-acetylmuramic acid kinase | - |
| LZM82_RS10370 (LZM82_10370) | 2296075..2296998 | + | 924 | WP_000180252.1 | N-acetylmuramic acid 6-phosphate etherase | - |
| LZM82_RS10375 (LZM82_10375) | 2297022..2298818 | - | 1797 | WP_000544193.1 | sodium:proton antiporter | - |
| LZM82_RS10380 (LZM82_10380) | 2298837..2299178 | - | 342 | WP_001883835.1 | DUF2799 domain-containing protein | - |
| LZM82_RS10385 (LZM82_10385) | 2299431..2300915 | + | 1485 | WP_000964317.1 | carbon starvation protein A | - |
| LZM82_RS10390 (LZM82_10390) | 2301052..2302014 | - | 963 | WP_001883831.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| LZM82_RS10395 (LZM82_10395) | 2302049..2302483 | - | 435 | WP_001068088.1 | FKBP-type peptidyl-prolyl cis-trans isomerase | - |
| LZM82_RS10400 (LZM82_10400) | 2302646..2303161 | - | 516 | WP_000071968.1 | Lipoprotein signal peptidase | VF |
| LZM82_RS10405 (LZM82_10405) | 2303177..2306026 | - | 2850 | WP_000006088.1 | isoleucine--tRNA ligase | - |
| LZM82_RS10410 (LZM82_10410) | 2306057..2307025 | - | 969 | WP_000420406.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| LZM82_RS10415 (LZM82_10415) | 2307094..2308656 | - | 1563 | WP_001911253.1 | murein biosynthesis integral membrane protein MurJ | - |
| LZM82_RS10420 (LZM82_10420) | 2308914..2309174 | + | 261 | WP_000002742.1 | 30S ribosomal protein S20 | - |
| LZM82_RS10425 (LZM82_10425) | 2309243..2309545 | - | 303 | WP_001053149.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| LZM82_RS10430 (LZM82_10430) | 2309768..2310658 | - | 891 | WP_000018876.1 | Transcriptional activator protein NhaR | VF |
| LZM82_RS10435 (LZM82_10435) | 2311053..2312201 | + | 1149 | WP_000609761.1 | Na/Pi cotransporter family protein | - |
| LZM82_RS10440 (LZM82_10440) | 2312294..2313145 | - | 852 | WP_001250353.1 | thymidylate synthase | - |
| LZM82_RS10445 (LZM82_10445) | 2313155..2313970 | - | 816 | WP_001135560.1 | prolipoprotein diacylglyceryl transferase | - |
| LZM82_RS10450 (LZM82_10450) | 2313999..2314793 | - | 795 | WP_001019422.1 | sulfite exporter TauE/SafE family protein | - |
| LZM82_RS10455 (LZM82_10455) | 2314803..2317049 | - | 2247 | WP_000952226.1 | phosphoenolpyruvate--protein phosphotransferase | - |
| LZM82_RS10460 (LZM82_10460) | 2317052..2317570 | - | 519 | WP_001911254.1 | RNA pyrophosphohydrolase | - |
| LZM82_RS10465 (LZM82_10465) | 2318201..2318866 | + | 666 | WP_000801223.1 | DNA mismatch repair endonuclease MutH | - |
| LZM82_RS10470 (LZM82_10470) | 2319083..2320117 | + | 1035 | WP_001200442.1 | NADP(H)-dependent aldo-keto reductase | - |
| LZM82_RS10475 (LZM82_10475) | 2320155..2320406 | - | 252 | WP_001249919.1 | hypothetical protein | - |
| LZM82_RS10480 (LZM82_10480) | 2320984..2322318 | - | 1335 | WP_000107102.1 | Transcriptional regulatory protein ZraR | VF |
| LZM82_RS10485 (LZM82_10485) | 2322592..2324124 | - | 1533 | WP_000128764.1 | lysine--tRNA ligase | - |
| LZM82_RS10495 (LZM82_10495) | 2325423..2326736 | - | 1314 | WP_000815019.1 | branched-chain amino acid transport system II carrier protein | - |
| LZM82_RS10500 (LZM82_10500) | 2327045..2327767 | + | 723 | WP_000856169.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| LZM82_RS10505 (LZM82_10505) | 2327855..2329126 | + | 1272 | WP_000597951.1 | ATP-dependent RNA helicase SrmB | - |
| LZM82_RS10510 (LZM82_10510) | 2329248..2330837 | - | 1590 | WP_000013192.1 | peptide chain release factor 3 | - |
| LZM82_RS10515 (LZM82_10515) | 2331094..2331741 | - | 648 | WP_000854920.1 | LexA family transcriptional regulator | - |
| LZM82_RS10520 (LZM82_10520) | 2331859..2332110 | + | 252 | WP_000451746.1 | helix-turn-helix domain-containing protein | - |
| LZM82_RS10525 (LZM82_10525) | 2332166..2333035 | + | 870 | WP_001205850.1 | hypothetical protein | - |
| LZM82_RS10530 (LZM82_10530) | 2333022..2333684 | + | 663 | WP_001158521.1 | DUF6475 domain-containing protein | - |
| LZM82_RS10535 (LZM82_10535) | 2333671..2334219 | + | 549 | WP_000848909.1 | lytic transglycosylase domain-containing protein | - |
| LZM82_RS10540 (LZM82_10540) | 2334216..2334515 | + | 300 | WP_000210564.1 | flagellar transcriptional regulator FlhD | - |
| LZM82_RS10545 (LZM82_10545) | 2334512..2335045 | + | 534 | WP_000566755.1 | FlhC family transcriptional regulator | - |
| LZM82_RS10550 (LZM82_10550) | 2335103..2335534 | + | 432 | WP_000183214.1 | entry exclusion protein EexR | - |
| LZM82_RS10555 (LZM82_10555) | 2335567..2339136 | - | 3570 | WP_000263683.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| LZM82_RS10560 (LZM82_10560) | 2339140..2340528 | - | 1389 | WP_000755289.1 | conjugal transfer protein TraH | - |
| LZM82_RS10565 (LZM82_10565) | 2340531..2341475 | - | 945 | WP_001260107.1 | conjugal transfer protein TraF | - |
| LZM82_RS10570 (LZM82_10570) | 2341732..2342691 | - | 960 | WP_000198593.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| LZM82_RS10575 (LZM82_10575) | 2343217..2343924 | - | 708 | WP_000989526.1 | hypothetical protein | - |
| LZM82_RS10580 (LZM82_10580) | 2344014..2345087 | - | 1074 | WP_001207590.1 | primase-helicase zinc-binding domain-containing protein | - |
| LZM82_RS10585 (LZM82_10585) | 2345178..2345519 | - | 342 | WP_001081787.1 | hypothetical protein | - |
| LZM82_RS10590 (LZM82_10590) | 2345519..2346016 | - | 498 | WP_000797297.1 | DNA repair protein RadC | - |
| LZM82_RS10595 (LZM82_10595) | 2346101..2347756 | - | 1656 | WP_001016320.1 | nitric oxide reductase activation protein NorD | - |
| LZM82_RS10600 (LZM82_10600) | 2347826..2348266 | - | 441 | WP_001192023.1 | hypothetical protein | - |
| LZM82_RS10605 (LZM82_10605) | 2348328..2349281 | - | 954 | WP_000027441.1 | DUF3150 domain-containing protein | - |
| LZM82_RS10610 (LZM82_10610) | 2349380..2350147 | - | 768 | WP_000970189.1 | hypothetical protein | - |
| LZM82_RS10615 (LZM82_10615) | 2350147..2351106 | - | 960 | WP_000139695.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
| LZM82_RS10620 (LZM82_10620) | 2351316..2352332 | - | 1017 | WP_000862956.1 | YqaJ viral recombinase family protein | - |
| LZM82_RS10625 (LZM82_10625) | 2352393..2352536 | - | 144 | WP_000167277.1 | hypothetical protein | - |
| LZM82_RS10630 (LZM82_10630) | 2352618..2353436 | - | 819 | WP_000414662.1 | phage recombination protein Bet | - |
| LZM82_RS10635 (LZM82_10635) | 2353516..2353935 | - | 420 | WP_000795985.1 | single-stranded DNA-binding protein | - |
| LZM82_RS10640 (LZM82_10640) | 2353951..2354277 | - | 327 | WP_000455723.1 | hypothetical protein | - |
| LZM82_RS10645 (LZM82_10645) | 2354645..2355247 | + | 603 | WP_000035785.1 | hypothetical protein | - |
| LZM82_RS10650 (LZM82_10650) | 2355356..2356039 | + | 684 | WP_001082313.1 | endonuclease | - |
| LZM82_RS10655 (LZM82_10655) | 2356270..2357286 | + | 1017 | WP_001918293.1 | AAA family ATPase | - |
| LZM82_RS10660 (LZM82_10660) | 2357394..2358893 | + | 1500 | WP_001920874.1 | IS21 family transposase ISCte8 | Transposase |
| LZM82_RS10665 (LZM82_10665) | 2358883..2359638 | + | 756 | WP_000546748.1 | IS21 family transposase ISAlde2 | Transposase |
| LZM82_RS10670 (LZM82_10670) | 2359769..2361334 | + | 1566 | WP_001918292.1 | hypothetical protein | - |
| LZM82_RS10675 (LZM82_10675) | 2361425..2365117 | - | 3693 | WP_000805082.1 | conjugal transfer protein TraN | - |
| LZM82_RS10680 (LZM82_10680) | 2365120..2366148 | - | 1029 | WP_000735886.1 | TraU family protein | - |
| LZM82_RS10685 (LZM82_10685) | 2366132..2367256 | - | 1125 | WP_001189235.1 | TrbC family F-type conjugative pilus assembly protein | - |
| LZM82_RS10690 (LZM82_10690) | 2367267..2367779 | - | 513 | WP_001166558.1 | S26 family signal peptidase | - |
| LZM82_RS10695 (LZM82_10695) | 2367763..2368110 | - | 348 | WP_001044650.1 | hypothetical protein | - |
| LZM82_RS10700 (LZM82_10700) | 2368103..2370502 | - | 2400 | WP_000648042.1 | type IV secretion system protein TraC | - |
| LZM82_RS10705 (LZM82_10705) | 2370502..2371194 | - | 693 | WP_001228926.1 | DsbC family protein | - |
| LZM82_RS10710 (LZM82_10710) | 2371326..2372264 | - | 939 | WP_000356587.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| LZM82_RS10715 (LZM82_10715) | 2372257..2373048 | - | 792 | WP_000095578.1 | type IV toxin-antitoxin system AbiEi family antitoxin | Antitoxin Detail |
| LZM82_RS10720 (LZM82_10720) | 2373269..2373655 | - | 387 | WP_000180223.1 | TraA family conjugative transfer protein | - |
| LZM82_RS10725 (LZM82_10725) | 2373652..2374224 | - | 573 | WP_001944091.1 | type IV conjugative transfer system lipoprotein TraV | - |
| LZM82_RS10730 (LZM82_10730) | 2374299..2375588 | - | 1290 | WP_000647305.1 | TraB/VirB10 family protein | - |
| LZM82_RS10735 (LZM82_10735) | 2375591..2376487 | - | 897 | WP_001911237.1 | type-F conjugative transfer system secretin TraK | - |
| LZM82_RS10740 (LZM82_10740) | 2376471..2377097 | - | 627 | WP_000667170.1 | TraE/TraK family type IV conjugative transfer system protein | - |
| LZM82_RS10745 (LZM82_10745) | 2377094..2377375 | - | 282 | WP_000433891.1 | type IV conjugative transfer system protein TraL | - |
| LZM82_RS10750 (LZM82_10750) | 2377664..2378251 | + | 588 | WP_001167482.1 | hypothetical protein | - |
| LZM82_RS10755 (LZM82_10755) | 2378278..2378913 | - | 636 | WP_000033757.1 | DUF4400 domain-containing protein | - |
| LZM82_RS10760 (LZM82_10760) | 2378900..2379460 | - | 561 | WP_000546514.1 | hypothetical protein | - |
| LZM82_RS10765 (LZM82_10765) | 2379470..2381290 | - | 1821 | WP_000661888.1 | conjugative transfer system coupling protein TraD | - |
| LZM82_RS10770 (LZM82_10770) | 2381339..2383489 | - | 2151 | WP_000475916.1 | MobH family relaxase | - |
| LZM82_RS10775 (LZM82_10775) | 2383611..2384426 | - | 816 | WP_001125250.1 | abortive infection family protein | - |
| LZM82_RS10780 (LZM82_10780) | 2384461..2385231 | - | 771 | WP_000158025.1 | hypothetical protein | - |
| LZM82_RS10785 (LZM82_10785) | 2385258..2387309 | - | 2052 | WP_000279702.1 | protease Lon-related BREX system protein BrxL | - |
| LZM82_RS10790 (LZM82_10790) | 2387348..2389651 | - | 2304 | WP_000567536.1 | PglZ domain-containing protein | - |
| LZM82_RS10795 (LZM82_10795) | 2389664..2393404 | - | 3741 | WP_000779609.1 | BREX-1 system adenine-specific DNA-methyltransferase PglX | - |
| LZM82_RS10800 (LZM82_10800) | 2393409..2397098 | - | 3690 | WP_000152592.1 | BREX system P-loop protein BrxC | - |
| LZM82_RS10805 (LZM82_10805) | 2397111..2397659 | - | 549 | WP_001115853.1 | hypothetical protein | - |
| LZM82_RS10810 (LZM82_10810) | 2397643..2398443 | - | 801 | WP_000653856.1 | DUF1819 family protein | - |
| LZM82_RS10815 (LZM82_10815) | 2398461..2399381 | - | 921 | WP_000180270.1 | WYL domain-containing protein | - |
| LZM82_RS10820 (LZM82_10820) | 2399699..2399998 | - | 300 | WP_000284114.1 | hypothetical protein | - |
| LZM82_RS10825 (LZM82_10825) | 2400086..2400991 | - | 906 | WP_000196209.1 | 3'-5' exonuclease | - |
| LZM82_RS10830 (LZM82_10830) | 2401375..2401632 | - | 258 | WP_000182836.1 | hypothetical protein | - |
| LZM82_RS10835 (LZM82_10835) | 2401631..2402080 | + | 450 | WP_000116661.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| LZM82_RS10840 (LZM82_10840) | 2402088..2402321 | + | 234 | Protein_2110 | DNA polymerase V subunit UmuC | - |
| LZM82_RS10845 (LZM82_10845) | 2402510..2403013 | + | 504 | WP_000572562.1 | hypothetical protein | - |
| LZM82_RS10850 (LZM82_10850) | 2403071..2404282 | + | 1212 | WP_001122813.1 | IS256 family transposase ISSod18 | Transposase |
| LZM82_RS10855 (LZM82_10855) | 2404382..2405593 | + | 1212 | WP_001122813.1 | IS256 family transposase ISSod18 | Transposase |
| LZM82_RS10860 (LZM82_10860) | 2405630..2406937 | - | 1308 | Protein_2114 | Tn3 family transposase TnpA_ISShfr9 | Transposase |
| LZM82_RS10865 (LZM82_10865) | 2407051..2407644 | - | 594 | WP_000107352.1 | Tn3 family transposase TnpA_IS3000 | Transposase |
| LZM82_RS10870 (LZM82_10870) | 2407928..2409100 | + | 1173 | WP_001142610.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| LZM82_RS10875 (LZM82_10875) | 2409111..2409554 | - | 444 | WP_000348524.1 | conjugative transfer protein MobI(A/C) | - |
| LZM82_RS10880 (LZM82_10880) | 2410019..2410993 | + | 975 | WP_000497807.1 | ParM/StbA family protein | - |
| LZM82_RS10885 (LZM82_10885) | 2410996..2411265 | + | 270 | WP_001995600.1 | hypothetical protein | - |
| LZM82_RS10890 (LZM82_10890) | 2411267..2412508 | + | 1242 | WP_001218618.1 | Prophage integrase IntS ; Integrase | Integrase |
| LZM82_RS10895 (LZM82_10895) | 2412638..2414656 | - | 2019 | WP_000211147.1 | ATP-binding protein | - |
| LZM82_RS10900 (LZM82_10900) | 2414802..2414990 | - | 189 | WP_000127615.1 | hypothetical protein | - |
| LZM82_RS10905 (LZM82_10905) | 2415731..2417788 | + | 2058 | WP_000160066.1 | putative signaling protein | VF |
| LZM82_RS10910 (LZM82_10910) | 2417777..2418226 | - | 450 | WP_000214238.1 | Ribosomal-protein-alanine acetyltransferase | VF |
| LZM82_RS10915 (LZM82_10915) | 2418223..2418630 | - | 408 | WP_000953212.1 | DNA polymerase III subunit psi | - |
| LZM82_RS10920 (LZM82_10920) | 2418741..2419244 | - | 504 | WP_000908540.1 | N-acetyltransferase | - |
| LZM82_RS10925 (LZM82_10925) | 2419228..2419755 | - | 528 | WP_000932672.1 | SCP2 domain-containing protein | - |
| LZM82_RS10930 (LZM82_10930) | 2419988..2422042 | + | 2055 | WP_001111411.1 | bifunctional diguanylate cyclase/phosphodiesterase | - |
| LZM82_RS10935 (LZM82_10935) | 2422150..2423163 | + | 1014 | WP_000421327.1 | peptidase U32 family protein | - |
| LZM82_RS10940 (LZM82_10940) | 2423175..2424053 | + | 879 | WP_000872504.1 | U32 family peptidase | - |
| LZM82_RS10945 (LZM82_10945) | 2424106..2425443 | - | 1338 | WP_000981941.1 | sodium-coupled multidrug efflux MATE transporter VcrM | - |
| LZM82_RS10950 (LZM82_10950) | 2425490..2425897 | - | 408 | WP_000887847.1 | MarR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|