MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 48371 bp
Accession: NZ_CP089440 Location: 1..48371 Organism: Citrobacter portucalensis strain GD21SC92T Replicon: plasmid pHN21SC92-3
Accession: NZ_CP089440 Location: 1..48371 Organism: Citrobacter portucalensis strain GD21SC92T Replicon: plasmid pHN21SC92-3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LT980_RS26960 (LT980_26950) | 57..410 | - | 354 | WP_000876434.1 | DNA distortion polypeptide 3 | - |
| LT980_RS26965 (LT980_26955) | 547..993 | - | 447 | WP_001074386.1 | hypothetical protein | - |
| LT980_RS26970 (LT980_26960) | 1033..1869 | - | 837 | WP_001050931.1 | RepB family plasmid replication initiator protein | - |
| LT980_RS26975 (LT980_26965) | 3125..3376 | + | 252 | WP_000121743.1 | plasmid stabilization protein | Antitoxin Detail |
| LT980_RS26980 (LT980_26970) | 3366..3647 | + | 282 | WP_000220560.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LT980_RS26985 (LT980_26975) | 3793..4116 | + | 324 | WP_001181903.1 | hypothetical protein | - |
| LT980_RS26990 (LT980_26980) | 4161..4406 | + | 246 | WP_000356546.1 | hypothetical protein | - |
| LT980_RS26995 (LT980_26985) | 4396..4611 | + | 216 | WP_001180116.1 | hypothetical protein | - |
| LT980_RS27000 (LT980_26990) | 4704..5033 | + | 330 | WP_000866648.1 | hypothetical protein | - |
| LT980_RS27005 (LT980_26995) | 5320..5469 | + | 150 | WP_000003880.1 | hypothetical protein | - |
| LT980_RS27010 (LT980_27000) | 5482..5754 | + | 273 | WP_000160399.1 | hypothetical protein | - |
| LT980_RS27015 (LT980_27005) | 6081..6626 | + | 546 | WP_038976855.1 | DNA distortion polypeptide 1 | - |
| LT980_RS27020 (LT980_27010) | 6629..7786 | + | 1158 | WP_000538023.1 | DNA distortion polypeptide 2 | - |
| LT980_RS27025 (LT980_27015) | 8147..8638 | + | 492 | WP_000872475.1 | transcription termination/antitermination NusG family protein | - |
| LT980_RS27030 (LT980_27020) | 8863..9507 | + | 645 | WP_000953539.1 | Type IV secretion system protein virB1 | VF |
| LT980_RS27035 (LT980_27025) | 9491..9781 | + | 291 | WP_000921916.1 | TrbC/VirB2 family protein | - |
| LT980_RS27040 (LT980_27030) | 9805..12564 | + | 2760 | WP_178970148.1 | Type IV secretion system protein virB4 | VF |
| LT980_RS27045 (LT980_27035) | 12566..13303 | + | 738 | WP_000737859.1 | type IV secretion system protein | - |
| LT980_RS27050 (LT980_27040) | 13313..13573 | + | 261 | WP_001228869.1 | EexN family lipoprotein | - |
| LT980_RS27055 (LT980_27045) | 13585..14640 | + | 1056 | WP_000235774.1 | type IV secretion system protein | - |
| LT980_RS27060 (LT980_27050) | 14830..15552 | + | 723 | WP_000394570.1 | Type IV secretion system protein PtlE | VF |
| LT980_RS27065 (LT980_27055) | 15558..16487 | + | 930 | WP_000776689.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| LT980_RS27070 (LT980_27060) | 16484..17698 | + | 1215 | WP_001295061.1 | Type IV secretion system protein virB10 | VF |
| LT980_RS27075 (LT980_27065) | 17716..18753 | + | 1038 | WP_000217791.1 | Type IV secretion system protein PtlH | VF |
| LT980_RS27080 (LT980_27070) | 18758..20593 | + | 1836 | WP_000053826.1 | type IV secretory system conjugative DNA transfer family protein | - |
| LT980_RS27085 (LT980_27075) | 20590..20985 | + | 396 | WP_000733627.1 | cag pathogenicity island Cag12 family protein | - |
| LT980_RS27090 (LT980_27080) | 20988..21320 | + | 333 | WP_000699980.1 | hypothetical protein | - |
| LT980_RS27095 (LT980_27085) | 21563..22378 | + | 816 | WP_000018321.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| LT980_RS27100 (LT980_27090) | 22532..23440 | - | 909 | WP_000174819.1 | C45 family peptidase | - |
| LT980_RS27105 (LT980_27095) | 23587..23673 | + | 87 | Protein_29 | micrococcal nuclease | - |
| LT980_RS27110 (LT980_27100) | 24088..24333 | + | 246 | WP_001243650.1 | hypothetical protein | - |
| LT980_RS27115 (LT980_27105) | 24353..26677 | + | 2325 | WP_001235773.1 | type IA DNA topoisomerase | - |
| LT980_RS27120 (LT980_27110) | 26689..27138 | + | 450 | WP_001282381.1 | H-NS family nucleoid-associated regulatory protein | - |
| LT980_RS27125 (LT980_27115) | 27201..27605 | + | 405 | WP_000059893.1 | hypothetical protein | - |
| LT980_RS27130 (LT980_27120) | 27760..29058 | - | 1299 | Protein_34 | Tn3 family transposase TnpA_Tn3 | Transposase |
| LT980_RS27135 (LT980_27125) | 29126..29830 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LT980_RS27140 (LT980_27130) | 29883..30041 | - | 159 | Protein_36 | IS3 family transposase ISAs17 | Transposase |
| LT980_RS27145 (LT980_27135) | 30436..31092 | + | 657 | WP_001516695.1 | Pentapeptide repeat protein | ARG |
| LT980_RS27150 (LT980_27140) | 31411..31830 | - | 420 | Protein_38 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| LT980_RS27155 (LT980_27145) | 31882..32586 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LT980_RS27160 (LT980_27150) | 32650..33333 | - | 684 | Protein_40 | IS91 family transposase ISAzo26 | Transposase |
| LT980_RS27165 (LT980_27155) | 33489..33962 | + | 474 | WP_001317507.1 | Dihydrofolate reductase type 1 | ARG |
| LT980_RS27170 (LT980_27160) | 34146..34238 | + | 93 | Protein_42 | SMR family transporter | - |
| LT980_RS27175 (LT980_27165) | 34291..34995 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LT980_RS27180 (LT980_27170) | 35061..35561 | + | 501 | Protein_44 | Tn3 family transposase | - |
| LT980_RS27185 (LT980_27175) | 35619..35861 | + | 243 | WP_000844627.1 | transposase | - |
| LT980_RS27190 (LT980_27180) | 35893..36543 | - | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| LT980_RS27195 (LT980_27185) | 36649..37848 | + | 1200 | WP_000804064.1 | Tetracycline resistance protein, class C | ARG |
| LT980_RS27200 (LT980_27190) | 37880..38764 | - | 885 | WP_000058717.1 | EamA family transporter | - |
| LT980_RS27205 (LT980_27195) | 38902..39294 | - | 393 | WP_001351729.1 | isochorismatase family cysteine hydrolase | - |
| LT980_RS27210 (LT980_27200) | 39298..40059 | + | 762 | Protein_50 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| LT980_RS27215 (LT980_27205) | 40095..43100 | - | 3006 | WP_001143760.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| LT980_RS27220 (LT980_27210) | 43264..43821 | + | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| LT980_RS27225 (LT980_27215) | 44004..44864 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| LT980_RS27230 (LT980_27220) | 45263..45901 | - | 639 | WP_038976852.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| LT980_RS27235 (LT980_27225) | 46187..46807 | + | 621 | WP_000864791.1 | ParA family protein | - |
| LT980_RS27240 (LT980_27230) | 46859..47089 | + | 231 | WP_000051064.1 | plasmid partition protein ParG | - |
| LT980_RS27245 (LT980_27235) | 47105..47398 | + | 294 | WP_015060510.1 | hypothetical protein | - |
| LT980_RS27250 (LT980_27240) | 47400..48368 | + | 969 | WP_000654804.1 | IS5 family transposase IS903B | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|