MGE detailed information
MGE type: Conjugative plasmid MGE length: 131627 bp
Accession: NZ_CP089438 Location: 1..131627 Organism: Citrobacter portucalensis strain GD21SC92T Replicon: plasmid pHN21SC92-1
Accession: NZ_CP089438 Location: 1..131627 Organism: Citrobacter portucalensis strain GD21SC92T Replicon: plasmid pHN21SC92-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LT980_RS24930 (LT980_24920) | 1..1101 | + | 1101 | WP_000350011.1 | RepB family plasmid replication initiator protein | - |
| LT980_RS24935 (LT980_24925) | 2138..2572 | - | 435 | WP_000883925.1 | hypothetical protein | - |
| LT980_RS24940 (LT980_24930) | 2590..3705 | - | 1116 | WP_000946102.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| LT980_RS24945 (LT980_24935) | 3974..4582 | + | 609 | WP_000849071.1 | hypothetical protein | - |
| LT980_RS24950 (LT980_24940) | 4587..5108 | + | 522 | WP_000393785.1 | hypothetical protein | - |
| LT980_RS24955 (LT980_24945) | 5111..5632 | + | 522 | WP_000805800.1 | hypothetical protein | - |
| LT980_RS24960 (LT980_24950) | 5729..6202 | + | 474 | WP_000057877.1 | hypothetical protein | - |
| LT980_RS24965 (LT980_24955) | 6213..6506 | + | 294 | WP_001370730.1 | hypothetical protein | - |
| LT980_RS24970 (LT980_24960) | 6511..7365 | + | 855 | WP_000539392.1 | hypothetical protein | - |
| LT980_RS24975 (LT980_24965) | 7365..8324 | + | 960 | WP_000829616.1 | S49 family peptidase | - |
| LT980_RS24980 (LT980_24970) | 8340..9200 | + | 861 | WP_000139698.1 | DsbA family protein | - |
| LT980_RS24985 (LT980_24975) | 9234..9662 | + | 429 | WP_000591074.1 | hypothetical protein | - |
| LT980_RS24990 (LT980_24980) | 9719..10078 | + | 360 | WP_000422768.1 | hypothetical protein | - |
| LT980_RS24995 (LT980_24985) | 10078..10524 | + | 447 | WP_000919345.1 | Fe3+-siderophore ABC transporter permease | - |
| LT980_RS25000 (LT980_24990) | 10521..11039 | + | 519 | WP_000210756.1 | nitrite reductase | - |
| LT980_RS25005 (LT980_24995) | 11039..11269 | + | 231 | WP_000972663.1 | hypothetical protein | - |
| LT980_RS25010 (LT980_25000) | 11256..12113 | + | 858 | WP_001167032.1 | hypothetical protein | - |
| LT980_RS25015 (LT980_25005) | 12139..12327 | + | 189 | WP_001270411.1 | hypothetical protein | - |
| LT980_RS25020 (LT980_25010) | 12344..12871 | + | 528 | WP_001236377.1 | thermonuclease family protein | - |
| LT980_RS25025 (LT980_25015) | 12929..13201 | + | 273 | WP_001043047.1 | HU family DNA-binding protein | - |
| LT980_RS25030 (LT980_25020) | 13289..13582 | + | 294 | WP_001239997.1 | chromosome segregation protein ParM | - |
| LT980_RS25035 (LT980_25025) | 13609..13911 | - | 303 | WP_000124640.1 | XRE family transcriptional regulator | Antitoxin Detail |
| LT980_RS25040 (LT980_25030) | 13916..14266 | - | 351 | WP_000270043.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LT980_RS25045 (LT980_25035) | 14429..14977 | + | 549 | WP_001061574.1 | transcriptional regulator | - |
| LT980_RS25050 (LT980_25040) | 15318..15512 | + | 195 | WP_000343597.1 | hypothetical protein | - |
| LT980_RS25055 (LT980_25045) | 15523..15894 | + | 372 | WP_000516916.1 | hypothetical protein | - |
| LT980_RS25060 (LT980_25050) | 15887..16357 | + | 471 | WP_001281821.1 | hypothetical protein | - |
| LT980_RS25065 (LT980_25055) | 16372..16707 | - | 336 | WP_000683476.1 | hypothetical protein | - |
| LT980_RS25070 (LT980_25060) | 16804..17292 | + | 489 | WP_001273096.1 | DUF1643 domain-containing protein | - |
| LT980_RS25075 (LT980_25065) | 17295..17792 | + | 498 | WP_000062185.1 | hypothetical protein | - |
| LT980_RS25080 (LT980_25070) | 18007..18711 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LT980_RS25085 (LT980_25075) | 18775..19113 | + | 339 | Protein_32 | Tn3 family transposase TnpR_Tn3 | Transposase |
| LT980_RS25090 (LT980_25080) | 19296..20156 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| LT980_RS25095 (LT980_25085) | 20326..21081 | + | 756 | WP_012372818.1 | 16S rRNA (guanine(1405)-N(7))-methyltransferase | ARG |
| LT980_RS25100 (LT980_25090) | 21162..21710 | - | 549 | WP_014342204.1 | cation:proton antiporter | - |
| LT980_RS25105 (LT980_25095) | 21773..22123 | + | 351 | Protein_36 | 60 kDa chaperonin | VF |
| LT980_RS25110 (LT980_25100) | 22398..23882 | + | 1485 | WP_015389030.1 | IS91 family transposase ISVsa3 | Transposase |
| LT980_RS25115 (LT980_25105) | 24115..24507 | + | 393 | Protein_38 | mechanosensitive ion channel | - |
| LT980_RS25120 (LT980_25110) | 24535..26070 | - | 1536 | WP_012372821.1 | Antiseptic resistance protein | ARG |
| LT980_RS25125 (LT980_25115) | 26465..27145 | + | 681 | Protein_40 | IS91 family transposase ISAzo26 | Transposase |
| LT980_RS25130 (LT980_25120) | 27210..27914 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LT980_RS25135 (LT980_25125) | 27920..28060 | + | 141 | WP_001044210.1 | hypothetical protein | - |
| LT980_RS25140 (LT980_25130) | 28546..29283 | + | 738 | WP_001366550.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| LT980_RS25145 (LT980_25135) | 29280..29504 | + | 225 | WP_000743213.1 | hypothetical protein | - |
| LT980_RS25150 (LT980_25140) | 29715..31208 | + | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| LT980_RS25155 (LT980_25145) | 31239..32123 | + | 885 | WP_001447541.1 | DUF3363 domain-containing protein | - |
| LT980_RS25160 (LT980_25150) | 32340..33554 | + | 1215 | WP_110991584.1 | Inner membrane transport protein YdhC | ARG |
| LT980_RS25165 (LT980_25155) | 33582..33887 | + | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| LT980_RS25170 (LT980_25160) | 33999..34187 | + | 189 | Protein_49 | IS91 family transposase | - |
| LT980_RS25175 (LT980_25165) | 34154..35353 | - | 1200 | WP_000804063.1 | Tetracycline resistance protein, class C | ARG |
| LT980_RS25180 (LT980_25170) | 35459..36109 | + | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| LT980_RS25185 (LT980_25175) | 36141..36383 | - | 243 | WP_000844627.1 | transposase | - |
| LT980_RS25190 (LT980_25180) | 36689..37525 | - | 837 | WP_000480968.1 | hypothetical protein | ARG |
| LT980_RS25195 (LT980_25185) | 37525..38328 | - | 804 | WP_001082320.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| LT980_RS25200 (LT980_25190) | 38389..39204 | - | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| LT980_RS25205 (LT980_25195) | 39511..39822 | + | 312 | WP_000338945.1 | hypothetical protein | - |
| LT980_RS25210 (LT980_25200) | 39996..40781 | + | 786 | WP_001151304.1 | Sporulation initiation inhibitor protein Soj | VF |
| LT980_RS25215 (LT980_25205) | 40785..41966 | + | 1182 | WP_001207227.1 | KorB domain-containing protein | - |
| LT980_RS25220 (LT980_25210) | 42015..42287 | + | 273 | WP_000703827.1 | helix-turn-helix domain-containing protein | - |
| LT980_RS25225 (LT980_25215) | 42340..42975 | - | 636 | WP_000074431.1 | N-6 DNA methylase | - |
| LT980_RS25230 (LT980_25220) | 43067..43210 | - | 144 | WP_000939033.1 | hypothetical protein | - |
| LT980_RS25235 (LT980_25225) | 43529..43906 | + | 378 | WP_001125905.1 | hypothetical protein | - |
| LT980_RS25240 (LT980_25230) | 43899..44180 | + | 282 | WP_000044824.1 | hypothetical protein | - |
| LT980_RS25245 (LT980_25235) | 44155..44829 | + | 675 | WP_000344151.1 | thymidylate kinase | - |
| LT980_RS25250 (LT980_25240) | 44822..45328 | + | 507 | WP_000566600.1 | hypothetical protein | - |
| LT980_RS25255 (LT980_25245) | 45334..45645 | + | 312 | WP_002210541.1 | hypothetical protein | - |
| LT980_RS25260 (LT980_25250) | 45654..46154 | + | 501 | WP_000647189.1 | hypothetical protein | - |
| LT980_RS25265 (LT980_25255) | 46158..47585 | + | 1428 | WP_000936896.1 | DNA cytosine methyltransferase | - |
| LT980_RS25270 (LT980_25260) | 47585..48241 | + | 657 | WP_000268551.1 | hypothetical protein | - |
| LT980_RS25275 (LT980_25265) | 48447..48665 | + | 219 | WP_000362482.1 | hypothetical protein | - |
| LT980_RS25280 (LT980_25270) | 48759..49376 | + | 618 | WP_000464631.1 | hypothetical protein | - |
| LT980_RS25285 (LT980_25275) | 49609..49887 | + | 279 | WP_014386427.1 | hypothetical protein | - |
| LT980_RS25290 (LT980_25280) | 49979..50467 | - | 489 | WP_000468105.1 | hypothetical protein | - |
| LT980_RS25295 (LT980_25285) | 50482..52674 | - | 2193 | WP_000366822.1 | DNA topoisomerase 3 | - |
| LT980_RS25300 (LT980_25290) | 52674..52907 | - | 234 | WP_001191892.1 | hypothetical protein | - |
| LT980_RS25305 (LT980_25295) | 52889..53506 | - | 618 | WP_001249396.1 | hypothetical protein | - |
| LT980_RS25310 (LT980_25300) | 53674..56652 | + | 2979 | WP_001337757.1 | hypothetical protein | Relaxase |
| LT980_RS25315 (LT980_25305) | 56649..58514 | + | 1866 | WP_000178856.1 | conjugative transfer system coupling protein TraD | - |
| LT980_RS25320 (LT980_25310) | 58564..59109 | + | 546 | WP_000228720.1 | hypothetical protein | - |
| LT980_RS25325 (LT980_25315) | 59066..59695 | + | 630 | WP_000743450.1 | DUF4400 domain-containing protein | - |
| LT980_RS25330 (LT980_25320) | 59705..60151 | + | 447 | WP_000122506.1 | hypothetical protein | - |
| LT980_RS25335 (LT980_25325) | 60161..60361 | + | 201 | WP_250672273.1 | hypothetical protein | - |
| LT980_RS25340 (LT980_25330) | 60772..61119 | + | 348 | WP_000609174.1 | IS66 family transposase ISCfr14 | Transposase |
| LT980_RS25345 (LT980_25335) | 61169..62704 | + | 1536 | WP_001000409.1 | IS66 family transposase ISSgsp1 | Transposase |
| LT980_RS25350 (LT980_25340) | 62747..63307 | + | 561 | Protein_85 | hypothetical protein | - |
| LT980_RS25355 (LT980_25345) | 63548..67702 | + | 4155 | WP_014342219.1 | Putative deoxyribonuclease RhsC | VF |
| LT980_RS25360 (LT980_25350) | 67699..67971 | + | 273 | WP_000787563.1 | MafI family immunity protein | - |
| LT980_RS25365 (LT980_25355) | 68266..68565 | + | 300 | WP_011872911.1 | hypothetical protein | - |
| LT980_RS25370 (LT980_25360) | 68732..69184 | + | 453 | WP_000791469.1 | hypothetical protein | - |
| LT980_RS25375 (LT980_25365) | 69200..69802 | - | 603 | WP_000278322.1 | hypothetical protein | - |
| LT980_RS25380 (LT980_25370) | 70064..70345 | + | 282 | WP_000575657.1 | hypothetical protein | - |
| LT980_RS25385 (LT980_25375) | 70644..71180 | + | 537 | WP_000949433.1 | hypothetical protein | - |
| LT980_RS25390 (LT980_25380) | 71183..72193 | + | 1011 | WP_000543934.1 | IS91 family transposase ISWz1 | Transposase |
| LT980_RS25395 (LT980_25385) | 72198..73067 | + | 870 | WP_000997323.1 | 3'-5' exonuclease | - |
| LT980_RS25400 (LT980_25390) | 73064..73555 | + | 492 | WP_000139717.1 | hypothetical protein | - |
| LT980_RS25405 (LT980_25395) | 73623..75137 | - | 1515 | Protein_96 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| LT980_RS25410 (LT980_25400) | 75203..75907 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LT980_RS25415 (LT980_25405) | 75960..77477 | + | 1518 | Protein_98 | Methyl-accepting chemotaxis protein McpQ | VF |
| LT980_RS25420 (LT980_25410) | 77667..78341 | + | 675 | Protein_99 | IS5 family transposase IS903B | Transposase |
| LT980_RS25425 (LT980_25415) | 78447..79283 | - | 837 | WP_000480968.1 | hypothetical protein | ARG |
| LT980_RS25430 (LT980_25420) | 79283..80086 | - | 804 | WP_001082320.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| LT980_RS25435 (LT980_25425) | 80098..80766 | - | 669 | WP_023434504.1 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| LT980_RS25440 (LT980_25430) | 80892..81107 | + | 216 | Protein_103 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| LT980_RS25445 (LT980_25435) | 81233..81382 | + | 150 | WP_155275771.1 | hypothetical protein | - |
| LT980_RS25450 (LT980_25440) | 81552..82985 | - | 1434 | WP_003152694.1 | Outer membrane protein OprJ | VF |
| LT980_RS25455 (LT980_25445) | 82990..86124 | - | 3135 | WP_118842627.1 | Multidrug resistance protein MexB | VF |
| LT980_RS25460 (LT980_25450) | 86140..87303 | - | 1164 | WP_118842626.1 | Multidrug efflux pump subunit AcrA | VF |
| LT980_RS25465 (LT980_25455) | 87483..88040 | + | 558 | WP_118842625.1 | transcriptional regulator | - |
| LT980_RS25470 (LT980_25460) | 88721..88858 | - | 138 | WP_181728240.1 | hypothetical protein | - |
| LT980_RS25475 (LT980_25465) | 89044..89748 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LT980_RS25480 (LT980_25470) | 89814..90566 | + | 753 | Protein_111 | replication initiation protein RepM | - |
| LT980_RS25485 (LT980_25475) | 90633..91175 | + | 543 | WP_004896925.1 | plasmid replication DNA-binding protein | - |
| LT980_RS25490 (LT980_25480) | 91534..92418 | - | 885 | WP_000155092.1 | hypothetical protein | ARG |
| LT980_RS25495 (LT980_25485) | 92474..93949 | - | 1476 | WP_000052512.1 | putative ABC transporter ATP-binding protein YbiT | ARG |
| LT980_RS25500 (LT980_25490) | 94348..95532 | - | 1185 | WP_002001451.1 | IS4 family transposase ISEc29 | Transposase |
| LT980_RS25505 (LT980_25495) | 95581..95766 | + | 186 | WP_002026779.1 | hypothetical protein | - |
| LT980_RS25510 (LT980_25500) | 96248..97021 | - | 774 | WP_000359986.1 | 16S rRNA (guanine(1405)-N(7))-methyltransferase | ARG |
| LT980_RS25515 (LT980_25505) | 97347..98186 | - | 840 | Protein_118 | IS5 family transposase ISEc35 | Transposase |
| LT980_RS25520 (LT980_25510) | 98420..99961 | - | 1542 | WP_000050481.1 | IS91 family transposase ISVsa3 | Transposase |
| LT980_RS25525 (LT980_25515) | 100366..101205 | - | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| LT980_RS25530 (LT980_25520) | 101199..101534 | - | 336 | WP_052238321.1 | SMR family transporter | - |
| LT980_RS25535 (LT980_25525) | 101427..101792 | + | 366 | WP_025999322.1 | hydrogenase maturation nickel metallochaperone HypA | - |
| LT980_RS25540 (LT980_25530) | 101796..102671 | - | 876 | WP_004193231.1 | LysR family transcriptional regulator AmpR | - |
| LT980_RS25545 (LT980_25535) | 102782..103921 | + | 1140 | WP_004236386.1 | Beta-lactamase | ARG |
| LT980_RS25550 (LT980_25540) | 104116..104937 | + | 822 | WP_013214003.1 | hypothetical protein | - |
| LT980_RS25555 (LT980_25545) | 104895..105083 | + | 189 | Protein_126 | LacI family transcriptional regulator | - |
| LT980_RS25560 (LT980_25550) | 105272..105502 | - | 231 | WP_004193241.1 | phage shock protein PspD | - |
| LT980_RS25565 (LT980_25555) | 105511..105870 | - | 360 | WP_150102511.1 | envelope stress response membrane protein PspC | - |
| LT980_RS25570 (LT980_25560) | 105870..106094 | - | 225 | WP_004193245.1 | envelope stress response membrane protein PspB | - |
| LT980_RS25575 (LT980_25565) | 106149..106817 | - | 669 | WP_003020532.1 | phage shock protein PspA | - |
| LT980_RS25580 (LT980_25570) | 106973..107962 | + | 990 | WP_017900991.1 | Psp operon transcriptional activator | VF |
| LT980_RS25585 (LT980_25575) | 108045..108689 | + | 645 | WP_017900990.1 | Pentapeptide repeat protein | ARG |
| LT980_RS25590 (LT980_25580) | 108785..109693 | - | 909 | WP_004193260.1 | putative oxidoreductase YghA | VF |
| LT980_RS25595 (LT980_25585) | 109870..110385 | - | 516 | WP_017900989.1 | 2-oxo-tetronate isomerase | - |
| LT980_RS25600 (LT980_25590) | 110396..110776 | - | 381 | Protein_135 | DUF421 domain-containing protein | - |
| LT980_RS25605 (LT980_25595) | 110831..111528 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| LT980_RS25610 (LT980_25600) | 111548..112111 | + | 564 | WP_250672272.1 | MBL fold metallo-hydrolase | - |
| LT980_RS25615 (LT980_25605) | 112525..113328 | + | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| LT980_RS25620 (LT980_25610) | 113328..114164 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| LT980_RS25625 (LT980_25615) | 114271..115041 | + | 771 | Protein_140 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| LT980_RS25630 (LT980_25620) | 115372..116247 | + | 876 | WP_001097010.1 | DNA replication terminus site-binding protein | - |
| LT980_RS25635 (LT980_25625) | 116400..117440 | + | 1041 | WP_000101568.1 | DNA-binding protein | - |
| LT980_RS25640 (LT980_25630) | 117727..119238 | + | 1512 | WP_000811656.1 | UvrD-helicase domain-containing protein | - |
| LT980_RS25645 (LT980_25635) | 119349..120389 | + | 1041 | WP_001326396.1 | conjugal transfer protein TraF | - |
| LT980_RS25650 (LT980_25640) | 120391..121824 | + | 1434 | WP_000256129.1 | conjugal transfer protein TraH | - |
| LT980_RS25655 (LT980_25645) | 121837..125451 | + | 3615 | WP_000534551.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| LT980_RS25660 (LT980_25650) | 125489..125851 | - | 363 | WP_000683483.1 | hypothetical protein | - |
| LT980_RS25665 (LT980_25655) | 126567..126839 | + | 273 | WP_000356489.1 | helix-turn-helix domain-containing protein | - |
| LT980_RS25670 (LT980_25660) | 126839..127372 | + | 534 | WP_032064504.1 | transglycosylase SLT domain-containing protein | - |
| LT980_RS25675 (LT980_25665) | 127383..127991 | + | 609 | WP_000891157.1 | hypothetical protein | - |
| LT980_RS25680 (LT980_25670) | 127988..128539 | + | 552 | WP_001020646.1 | FlhC family transcriptional regulator | - |
| LT980_RS25685 (LT980_25675) | 128599..129018 | - | 420 | WP_000651490.1 | H-NS family nucleoid-associated regulatory protein | - |
| LT980_RS25690 (LT980_25680) | 129020..129313 | - | 294 | WP_000919078.1 | hypothetical protein | - |
| LT980_RS25695 (LT980_25685) | 129330..130313 | - | 984 | WP_000077458.1 | ParM/StbA family protein | - |
| LT980_RS25700 (LT980_25690) | 130812..131351 | + | 540 | WP_001447712.1 | conjugative transfer protein MobI(A/C) | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|