MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 65532 bp
Accession: NZ_CP089437 Location: 4379064..4444595 Organism: Citrobacter portucalensis strain GD21SC92T Replicon: chromosome
Accession: NZ_CP089437 Location: 4379064..4444595 Organism: Citrobacter portucalensis strain GD21SC92T Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LT980_RS21210 (LT980_21200) | 4374257..4375198 | + | 942 | WP_250671402.1 | 4-hydroxyproline epimerase | - |
| LT980_RS21215 (LT980_21205) | 4375195..4376298 | + | 1104 | WP_100271561.1 | FAD-dependent oxidoreductase | - |
| LT980_RS21220 (LT980_21210) | 4376295..4376549 | + | 255 | WP_057068533.1 | (2Fe-2S)-binding protein | - |
| LT980_RS21225 (LT980_21215) | 4376536..4377792 | + | 1257 | WP_250671403.1 | FAD/NAD(P)-binding oxidoreductase | - |
| LT980_RS21230 (LT980_21220) | 4378143..4378517 | - | 375 | WP_250672256.1 | Exc2 family lipoprotein | - |
| LT980_RS21235 (LT980_21225) | 4379329..4379592 | + | 264 | WP_009654429.1 | hypothetical protein | - |
| LT980_RS21240 (LT980_21230) | 4379589..4380317 | + | 729 | WP_045331665.1 | Fic family protein | - |
| LT980_RS21245 (LT980_21235) | 4380600..4381379 | - | 780 | WP_250671404.1 | HNH endonuclease | - |
| LT980_RS21250 (LT980_21240) | 4381540..4382430 | + | 891 | WP_055323322.1 | hypothetical protein | - |
| LT980_RS21255 (LT980_21245) | 4382569..4382763 | + | 195 | WP_001561320.1 | AlpA family transcriptional regulator | - |
| LT980_RS21260 (LT980_21250) | 4382780..4384063 | + | 1284 | WP_250671405.1 | chromosome partitioning protein ParB | - |
| LT980_RS21265 (LT980_21255) | 4384047..4384604 | + | 558 | WP_250671406.1 | DUF2857 domain-containing protein | - |
| LT980_RS21270 (LT980_21260) | 4384594..4385466 | + | 873 | WP_250671407.1 | STY4528 family pathogenicity island replication protein | - |
| LT980_RS21275 (LT980_21265) | 4385626..4386237 | + | 612 | WP_250671408.1 | TIGR03761 family integrating conjugative element protein | - |
| LT980_RS21280 (LT980_21270) | 4386227..4386652 | + | 426 | WP_148407917.1 | DUF3158 family protein | - |
| LT980_RS21285 (LT980_21275) | 4386844..4388670 | + | 1827 | WP_148407916.1 | DNA topoisomerase III | - |
| LT980_RS21290 (LT980_21280) | 4388718..4389188 | - | 471 | WP_023182588.1 | Hsp20 family protein | - |
| LT980_RS21295 (LT980_21285) | 4389351..4389539 | - | 189 | WP_250671409.1 | hypothetical protein | - |
| LT980_RS21300 (LT980_21290) | 4389575..4390018 | + | 444 | WP_032214541.1 | STY4534 family ICE replication protein | - |
| LT980_RS21305 (LT980_21295) | 4390089..4390472 | + | 384 | WP_250671410.1 | hypothetical protein | - |
| LT980_RS21310 (LT980_21300) | 4390584..4391240 | + | 657 | WP_250671411.1 | hypothetical protein | VF |
| LT980_RS21315 (LT980_21305) | 4391244..4391918 | + | 675 | WP_250671412.1 | TIGR03759 family integrating conjugative element protein | - |
| LT980_RS21320 (LT980_21310) | 4391897..4392415 | + | 519 | WP_250671413.1 | hypothetical protein | VF |
| LT980_RS21325 (LT980_21315) | 4392412..4394430 | + | 2019 | WP_250671414.1 | type IV conjugative transfer system coupling protein TraD | - |
| LT980_RS21330 (LT980_21320) | 4394427..4395059 | + | 633 | WP_250671415.1 | DUF4400 domain-containing protein | - |
| LT980_RS21335 (LT980_21325) | 4395367..4396038 | + | 672 | WP_250671416.1 | hypothetical protein | - |
| LT980_RS21340 (LT980_21330) | 4396374..4396682 | + | 309 | WP_180243412.1 | RAQPRD family integrative conjugative element protein | - |
| LT980_RS21345 (LT980_21335) | 4396675..4396908 | + | 234 | WP_032670664.1 | TIGR03758 family integrating conjugative element protein | - |
| LT980_RS21350 (LT980_21340) | 4396918..4397232 | + | 315 | WP_094888294.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| LT980_RS21355 (LT980_21345) | 4397234..4397587 | + | 354 | WP_250671417.1 | TIGR03750 family conjugal transfer protein | - |
| LT980_RS21360 (LT980_21350) | 4397584..4398243 | + | 660 | WP_180243413.1 | TIGR03746 family integrating conjugative element protein | - |
| LT980_RS21365 (LT980_21355) | 4398240..4399007 | + | 768 | WP_180243414.1 | TIGR03749 family integrating conjugative element protein | - |
| LT980_RS21370 (LT980_21360) | 4399004..4400299 | + | 1296 | WP_250671418.1 | TIGR03752 family integrating conjugative element protein | - |
| LT980_RS21375 (LT980_21365) | 4400296..4400655 | + | 360 | WP_250671419.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| LT980_RS21380 (LT980_21370) | 4400652..4403309 | + | 2658 | WP_250671420.1 | conjugative transfer ATPase | - |
| LT980_RS21385 (LT980_21375) | 4403441..4404709 | + | 1269 | WP_180243418.1 | phospholipase D-like domain-containing protein | - |
| LT980_RS21390 (LT980_21380) | 4404820..4405119 | - | 300 | WP_250671421.1 | helix-turn-helix transcriptional regulator | - |
| LT980_RS21395 (LT980_21385) | 4405290..4405565 | + | 276 | WP_250671422.1 | helix-turn-helix transcriptional regulator | - |
| LT980_RS21400 (LT980_21390) | 4405763..4406137 | + | 375 | WP_180243421.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| LT980_RS21405 (LT980_21395) | 4406181..4407539 | + | 1359 | WP_250671423.1 | amino acid permease | - |
| LT980_RS21410 (LT980_21400) | 4407517..4408308 | + | 792 | WP_250671424.1 | creatininase family protein | - |
| LT980_RS21415 (LT980_21405) | 4408406..4408825 | - | 420 | WP_250671425.1 | hypothetical protein | - |
| LT980_RS21420 (LT980_21410) | 4409063..4409953 | - | 891 | WP_250671426.1 | plasmid partitioning protein RepB C-terminal domain-containing protein | - |
| LT980_RS21425 (LT980_21415) | 4409955..4410845 | - | 891 | WP_232934380.1 | ParB/RepB/Spo0J family partition protein | - |
| LT980_RS21430 (LT980_21420) | 4410846..4412378 | - | 1533 | WP_232934381.1 | IS607 family transposase ISCbt3 | Transposase |
| LT980_RS21435 (LT980_21425) | 4412402..4413361 | - | 960 | WP_250671427.1 | fimbrial protein | - |
| LT980_RS21440 (LT980_21430) | 4413379..4414332 | - | 954 | WP_250671428.1 | fimbrial protein | - |
| LT980_RS21445 (LT980_21435) | 4414329..4416836 | - | 2508 | WP_250671429.1 | putative outer membrane usher protein ElfC | VF |
| LT980_RS21450 (LT980_21440) | 4416847..4417527 | - | 681 | WP_047737434.1 | putative fimbrial chaperone LpfB | VF |
| LT980_RS21455 (LT980_21445) | 4417631..4418143 | - | 513 | WP_009654430.1 | putative major fimbrial subunit LpfA | VF |
| LT980_RS21460 (LT980_21450) | 4418511..4419101 | - | 591 | WP_116956004.1 | Tyrosine recombinase XerC | VF |
| LT980_RS21465 (LT980_21455) | 4419315..4420247 | + | 933 | WP_250672258.1 | TIGR03756 family integrating conjugative element protein | - |
| LT980_RS21470 (LT980_21460) | 4420259..4421620 | + | 1362 | WP_250671430.1 | integrating conjugative element protein | - |
| LT980_RS21475 (LT980_21465) | 4421617..4423119 | + | 1503 | WP_250671431.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| LT980_RS21480 (LT980_21470) | 4423103..4423810 | - | 708 | WP_079775619.1 | SprT family zinc-dependent metalloprotease | - |
| LT980_RS21485 (LT980_21475) | 4423807..4427073 | - | 3267 | WP_250671432.1 | HsdR family type I site-specific deoxyribonuclease | - |
| LT980_RS21490 (LT980_21480) | 4427066..4428340 | - | 1275 | WP_250671433.1 | restriction endonuclease subunit S | - |
| LT980_RS21495 (LT980_21485) | 4428333..4430807 | - | 2475 | WP_220542178.1 | class I SAM-dependent DNA methyltransferase | - |
| LT980_RS21500 (LT980_21490) | 4430961..4431881 | - | 921 | WP_250671434.1 | HrgA protein | - |
| LT980_RS21505 (LT980_21495) | 4432093..4432965 | + | 873 | WP_250671435.1 | HNH endonuclease | - |
| LT980_RS21510 (LT980_21500) | 4433003..4433203 | - | 201 | WP_020845974.1 | cell surface composition regulator GlgS | - |
| LT980_RS21515 (LT980_21505) | 4433537..4433827 | + | 291 | WP_014908067.1 | hypothetical protein | - |
| LT980_RS21520 (LT980_21510) | 4433892..4434797 | + | 906 | WP_250671436.1 | zincin-like metallopeptidase domain-containing protein | - |
| LT980_RS21525 (LT980_21515) | 4434989..4435360 | + | 372 | WP_134769819.1 | hypothetical protein | - |
| LT980_RS21530 (LT980_21520) | 4435520..4437109 | + | 1590 | WP_250671437.1 | MobH family relaxase | - |
| LT980_RS21535 (LT980_21525) | 4437165..4437818 | - | 654 | WP_079775607.1 | HNH endonuclease | - |
| LT980_RS21540 (LT980_21530) | 4437930..4438196 | - | 267 | WP_186919296.1 | hypothetical protein | - |
| LT980_RS21545 (LT980_21535) | 4438265..4438648 | - | 384 | WP_250671438.1 | HipA N-terminal domain-containing protein | Toxin Detail |
| LT980_RS21550 (LT980_21540) | 4438784..4439035 | - | 252 | WP_186919298.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| LT980_RS21555 (LT980_21545) | 4439708..4440607 | + | 900 | WP_015959329.1 | SMEK domain-containing protein | - |
| LT980_RS21560 (LT980_21550) | 4440911..4441576 | - | 666 | WP_015959328.1 | class I SAM-dependent methyltransferase | - |
| LT980_RS21565 (LT980_21555) | 4441577..4442272 | - | 696 | WP_250671439.1 | hypothetical protein | - |
| LT980_RS21570 (LT980_21560) | 4442667..4444352 | - | 1686 | WP_250671440.1 | Prophage integrase IntS ; Integrase | Integrase |
| LT980_RS21580 (LT980_21570) | 4444880..4445899 | + | 1020 | WP_250671441.1 | NAD(P)-dependent alcohol dehydrogenase | - |
| LT980_RS21585 (LT980_21575) | 4446047..4447549 | + | 1503 | WP_250671443.1 | DUF853 domain-containing protein | - |
| LT980_RS21590 (LT980_21580) | 4447653..4448735 | - | 1083 | WP_008786067.1 | LPS export ABC transporter permease LptG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|