MGE detailed information
MGE type: Prophage MGE length: 77329 bp
Accession: NZ_CP088136 Location: 3261079..3338407 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SCPM-O-B-4515 Replicon: chromosome
Accession: NZ_CP088136 Location: 3261079..3338407 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SCPM-O-B-4515 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRM91_RS15605 () | 3256350..3258398 | - | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| LRM91_RS15610 () | 3258418..3259104 | - | 687 | WP_249895053.1 | RNA chaperone ProQ | - |
| LRM91_RS15615 () | 3259202..3259699 | - | 498 | WP_249895054.1 | GAF domain-containing protein | - |
| LRM91_RS15620 () | 3259828..3261110 | + | 1283 | Protein_3066 | membrane integrity lipid transport subunit YebS | - |
| LRM91_RS15625 () | 3261079..3263712 | + | 2634 | WP_001529852.1 | hypothetical protein | VF |
| LRM91_RS15630 () | 3263790..3265229 | + | 1440 | WP_249895055.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LRM91_RS15635 () | 3265347..3265583 | + | 237 | WP_024131108.1 | YebV family protein | - |
| LRM91_RS15640 () | 3265694..3265885 | + | 192 | WP_000457838.1 | DUF1482 family protein | - |
| LRM91_RS15645 () | 3265904..3266554 | - | 651 | WP_000986172.1 | protein-serine/threonine phosphatase | - |
| LRM91_RS15650 () | 3266778..3266942 | - | 165 | WP_001134856.1 | membrane protein | - |
| LRM91_RS15655 () | 3267227..3267949 | - | 723 | WP_249895056.1 | Guanine nucleotide exchange factor sopE2 | VF |
| LRM91_RS15660 () | 3268633..3269028 | + | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| LRM91_RS15665 () | 3269358..3269834 | + | 477 | WP_000030934.1 | hypothetical protein | - |
| LRM91_RS15670 () | 3270207..3270626 | - | 420 | WP_001025515.1 | GNAT family N-acetyltransferase | - |
| LRM91_RS15675 () | 3270999..3271268 | + | 270 | WP_001576019.1 | hypothetical protein | - |
| LRM91_RS15680 () | 3271434..3271574 | + | 141 | WP_249895057.1 | hypothetical protein | - |
| LRM91_RS15685 () | 3271720..3272927 | - | 1208 | Protein_3079 | IS256 family transposase ISEc39 | Transposase |
| LRM91_RS15690 () | 3272997..3273418 | + | 422 | Protein_3080 | tyrosine-type recombinase/integrase | - |
| LRM91_RS15695 () | 3273907..3274119 | - | 213 | WP_249895058.1 | hypothetical protein | - |
| LRM91_RS15700 () | 3274719..3275633 | + | 915 | WP_001233445.1 | DMT family transporter | - |
| LRM91_RS15705 () | 3275766..3275924 | + | 159 | WP_000480735.1 | DUF5993 family protein | - |
| LRM91_RS15710 () | 3275934..3276548 | + | 615 | WP_000848072.1 | disulfide bond formation protein B | - |
| LRM91_RS15715 () | 3276875..3277042 | - | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| LRM91_RS23050 () | 3277036..3277182 | + | 147 | WP_000951652.1 | hypothetical protein | - |
| LRM91_RS15720 () | 3277696..3277821 | - | 126 | WP_000457876.1 | hypothetical protein | - |
| LRM91_RS15725 () | 3277821..3278001 | + | 181 | Protein_3088 | IS3 family transposase | - |
| LRM91_RS15730 () | 3278391..3278591 | + | 201 | WP_001576015.1 | PagK family vesicle-borne virulence factor | - |
| LRM91_RS15735 () | 3278688..3279199 | - | 512 | Protein_3090 | tail fiber assembly protein | - |
| LRM91_RS15740 () | 3279212..3279499 | - | 288 | Protein_3091 | macro domain-containing protein | - |
| LRM91_RS15745 () | 3279509..3280740 | - | 1232 | Protein_3092 | tail fiber protein | - |
| LRM91_RS15750 () | 3280739..3281306 | - | 568 | Protein_3093 | phage terminase large subunit family protein | - |
| LRM91_RS15755 () | 3281293..3281784 | - | 492 | WP_000348540.1 | DUF1441 family protein | - |
| LRM91_RS15760 () | 3281839..3282027 | + | 189 | WP_001576014.1 | hypothetical protein | - |
| LRM91_RS15765 () | 3282092..3282259 | + | 168 | WP_000789530.1 | lytic enzyme | - |
| LRM91_RS15770 () | 3282516..3283048 | - | 533 | Protein_3097 | DUF2514 domain-containing protein | - |
| LRM91_RS15775 () | 3283102..3283293 | - | 192 | Protein_3098 | glycoside hydrolase family 19 protein | - |
| LRM91_RS15780 () | 3283282..3284006 | + | 725 | Protein_3099 | exonuclease VIII | - |
| LRM91_RS15785 () | 3284006..3284928 | + | 923 | Protein_3100 | hypothetical protein ; Integrase | Integrase |
| LRM91_RS15790 () | 3285873..3286673 | + | 801 | WP_001536069.1 | hypothetical protein | - |
| LRM91_RS15795 () | 3286702..3286943 | - | 242 | Protein_3102 | recombinase family protein | - |
| LRM91_RS15800 () | 3287153..3287875 | + | 723 | WP_000161702.1 | Guanine nucleotide exchange factor SopE | VF |
| LRM91_RS15805 () | 3288078..3288647 | - | 570 | WP_000143173.1 | tail fiber assembly protein | - |
| LRM91_RS15810 () | 3288647..3290845 | - | 2199 | WP_154074522.1 | prophage tail fiber N-terminal domain-containing protein | - |
| LRM91_RS15815 () | 3290899..3291135 | - | 237 | WP_223229643.1 | hypothetical protein | - |
| LRM91_RS15820 () | 3291180..3292043 | - | 864 | WP_072100756.1 | DUF1983 domain-containing protein | - |
| LRM91_RS15825 () | 3292083..3294531 | - | 2449 | Protein_3108 | host specificity protein J | - |
| LRM91_RS15830 () | 3294603..3295307 | - | 705 | WP_001576012.1 | tail assembly protein | - |
| LRM91_RS15835 () | 3295211..3295942 | - | 732 | WP_000606352.1 | C40 family peptidase | - |
| LRM91_RS15840 () | 3295952..3296647 | - | 696 | WP_001152416.1 | phage minor tail protein L | - |
| LRM91_RS15845 () | 3296737..3297270 | + | 534 | WP_000877926.1 | Superoxide dismutase [Cu-Zn] 1 | VF |
| LRM91_RS15850 () | 3297387..3297884 | - | 498 | WP_000725267.1 | Attachment invasion locus protein | VF |
| LRM91_RS15855 () | 3297983..3298315 | - | 333 | WP_000978295.1 | phage tail protein | - |
| LRM91_RS15860 () | 3298312..3301299 | - | 2988 | WP_249895787.1 | phage tail tape measure protein | - |
| LRM91_RS15865 () | 3301379..3301708 | - | 330 | WP_010989009.1 | phage tail assembly protein T | - |
| LRM91_RS15870 () | 3301705..3302103 | - | 399 | WP_000478858.1 | phage minor tail protein G | - |
| LRM91_RS15875 () | 3302149..3302898 | - | 750 | WP_249895059.1 | phage tail protein | - |
| LRM91_RS15880 () | 3302910..3303311 | - | 402 | WP_000196703.1 | phage minor tail U family protein | - |
| LRM91_RS15885 () | 3303266..3303874 | - | 609 | WP_249895060.1 | phage tail protein | - |
| LRM91_RS15890 () | 3303855..3304154 | - | 300 | WP_000774239.1 | ATP-binding protein | - |
| LRM91_RS15895 () | 3304147..3304470 | - | 324 | WP_249895061.1 | DUF2190 family protein | - |
| LRM91_RS15900 () | 3304561..3306642 | - | 2082 | WP_249895788.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| LRM91_RS15905 () | 3306566..3308113 | - | 1548 | WP_249895062.1 | phage portal protein | - |
| LRM91_RS15910 () | 3308110..3308316 | - | 207 | WP_000196190.1 | hypothetical protein | - |
| LRM91_RS15915 () | 3308313..3310451 | - | 2139 | WP_249895789.1 | phage terminase large subunit family protein | - |
| LRM91_RS15920 () | 3310408..3310941 | - | 534 | WP_000371784.1 | DUF1441 family protein | - |
| LRM91_RS15925 () | 3311149..3311628 | - | 480 | WP_001541990.1 | lysis protein | - |
| LRM91_RS15930 () | 3311646..3312098 | - | 453 | WP_000984586.1 | glycoside hydrolase family protein | - |
| LRM91_RS15935 () | 3312082..3312411 | - | 330 | WP_001574216.1 | phage holin, lambda family | - |
| LRM91_RS15940 () | 3312687..3313373 | + | 687 | WP_249895063.1 | type III secretion system effector protease GtgA | - |
| LRM91_RS15945 () | 3313734..3314183 | + | 450 | WP_000798708.1 | hypothetical protein | - |
| LRM91_RS15950 () | 3314557..3315084 | - | 528 | WP_249895064.1 | hypothetical protein | - |
| LRM91_RS15955 () | 3315178..3315867 | - | 690 | WP_001097218.1 | bacteriophage antitermination protein Q | - |
| LRM91_RS15960 () | 3315864..3316000 | - | 137 | Protein_3135 | YlcG family protein | - |
| LRM91_RS15965 () | 3315997..3316137 | - | 141 | Protein_3136 | recombination protein NinG | - |
| LRM91_RS15970 () | 3316221..3316820 | - | 600 | WP_000940753.1 | DUF1367 family protein | - |
| LRM91_RS15975 () | 3316884..3317102 | - | 219 | WP_001524708.1 | hypothetical protein | - |
| LRM91_RS15980 () | 3317404..3317502 | - | 99 | WP_223151200.1 | hypothetical protein | - |
| LRM91_RS15985 () | 3317821..3319800 | - | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| LRM91_RS15990 () | 3320197..3321327 | + | 1131 | WP_000529512.1 | GGDEF domain-containing protein | - |
| LRM91_RS15995 () | 3321614..3322009 | - | 396 | WP_000089416.1 | DUF977 family protein | - |
| LRM91_RS16000 () | 3322022..3322564 | - | 543 | WP_158000546.1 | replication protein P | - |
| LRM91_RS16005 () | 3322476..3323474 | - | 999 | WP_000729536.1 | DUF1376 domain-containing protein | - |
| LRM91_RS16010 () | 3323521..3324015 | - | 495 | WP_001574210.1 | toxin YdaT family protein | - |
| LRM91_RS16015 () | 3324002..3324256 | - | 255 | WP_001033912.1 | helix-turn-helix transcriptional regulator | - |
| LRM91_RS16020 () | 3324355..3324753 | + | 399 | WP_001574209.1 | helix-turn-helix domain-containing protein | - |
| LRM91_RS16025 () | 3325156..3325422 | + | 267 | WP_000687579.1 | hypothetical protein | - |
| LRM91_RS16030 () | 3325760..3326035 | + | 276 | WP_000103933.1 | hypothetical protein | - |
| LRM91_RS16035 () | 3326039..3326245 | + | 207 | WP_000682660.1 | cell division inhibitor protein | - |
| LRM91_RS16040 () | 3326321..3326656 | + | 336 | WP_000799627.1 | hypothetical protein | - |
| LRM91_RS16045 () | 3326797..3329487 | + | 2691 | WP_249895065.1 | exodeoxyribonuclease VIII | - |
| LRM91_RS16050 () | 3329480..3330310 | + | 831 | WP_001126031.1 | recombination protein RecT | - |
| LRM91_RS16055 () | 3330357..3330542 | + | 186 | WP_000280163.1 | DUF1187 family protein | - |
| LRM91_RS16060 () | 3330641..3331069 | + | 429 | WP_000743301.1 | hypothetical protein | - |
| LRM91_RS16065 () | 3331130..3331408 | + | 279 | WP_001575998.1 | excisionase | - |
| LRM91_RS16070 () | 3331383..3332462 | + | 1080 | WP_000087636.1 | hypothetical protein ; Integrase | Integrase |
| - | 3332600..3332745 | + | 146 | - | - | Antitoxin Detail |
| - | 3332602..3332705 | - | 104 | - | - | Toxin Detail |
| LRM91_RS16075 () | 3332845..3333198 | - | 354 | WP_000722370.1 | YebY family protein | - |
| LRM91_RS16080 () | 3333215..3334090 | - | 876 | WP_249895066.1 | copper homeostasis membrane protein CopD | - |
| LRM91_RS16085 () | 3334091..3334465 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| LRM91_RS16090 () | 3334603..3334833 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| LRM91_RS16095 () | 3334941..3335597 | + | 657 | WP_249895067.1 | carbon-nitrogen hydrolase family protein | - |
| LRM91_RS16100 () | 3335621..3336319 | + | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
| LRM91_RS16105 () | 3336356..3338407 | - | 2052 | WP_249895068.1 | oligopeptidase B | - |
| LRM91_RS16110 () | 3338620..3339279 | - | 660 | WP_000024715.1 | tellurite resistance TerB family protein | - |
| LRM91_RS16115 () | 3339373..3339726 | - | 354 | WP_001042123.1 | protein YebF | - |
| LRM91_RS16120 () | 3339794..3340084 | - | 291 | WP_249895069.1 | DNA damage-inducible protein YebG | - |
| LRM91_RS16125 () | 3340215..3341393 | + | 1179 | WP_000173421.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| LRM91_RS16130 () | 3341493..3342134 | - | 642 | WP_000800494.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|