MGE detailed information
MGE type: Conjugative plasmid MGE length: 138857 bp
Accession: NZ_CP087295 Location: 1..138857 Organism: Escherichia coli strain APEC E956 Replicon: plasmid pE956_1
Accession: NZ_CP087295 Location: 1..138857 Organism: Escherichia coli strain APEC E956 Replicon: plasmid pE956_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LO740_RS23690 (1) | 1..978 | + | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| LO740_RS23695 (1263) | 1263..2003 | - | 741 | WP_001066953.1 | tyrosine-type recombinase/integrase | - |
| LO740_RS23700 (2124) | 2124..2312 | - | 189 | WP_001332052.1 | hypothetical protein | - |
| LO740_RS23705 (2686) | 2686..3588 | - | 903 | WP_274491467.1 | hypothetical protein | VF |
| LO740_RS23710 (3657) | 3657..4766 | - | 1110 | WP_274491469.1 | SDR family oxidoreductase | - |
| LO740_RS23715 (5203) | 5203..6156 | - | 954 | WP_000280980.1 | Protease 7 | VF |
| LO740_RS23720 (7456) | 7456..7635 | - | 180 | Protein_6 | integrase core domain-containing protein | - |
| LO740_RS23725 (7774) | 7774..8987 | + | 1214 | WP_162842477.1 | IS3 family transposase IS629 | Transposase |
| LO740_RS23730 (9135) | 9135..9460 | - | 326 | Protein_8 | IS3 family transposase ISLad1 | Transposase |
| LO740_RS23735 (9506) | 9506..9846 | + | 341 | Protein_9 | IS3 family transposase | - |
| LO740_RS23740 (10441) | 10441..11628 | + | 1188 | WP_000928804.1 | efflux RND transporter periplasmic adaptor subunit | - |
| LO740_RS23745 (11625) | 11625..13565 | + | 1941 | WP_000733252.1 | Macrolide export ATP-binding/permease protein MacB | VF |
| LO740_RS23750 (13569) | 13569..14939 | + | 1371 | WP_001312828.1 | efflux transporter outer membrane subunit | - |
| LO740_RS23755 (15413) | 15413..15607 | + | 195 | Protein_13 | IS200-IS605 family transposase IS200C | Transposase |
| LO740_RS23760 (15736) | 15736..16677 | - | 942 | WP_000974762.1 | hypothetical protein | - |
| LO740_RS23765 (16912) | 16912..18301 | - | 1390 | Protein_15 | ISNCY family transposase ISKpn21 | Transposase |
| LO740_RS23770 (18611) | 18611..18760 | - | 150 | Protein_16 | IS3 family transposase | - |
| LO740_RS23775 (18938) | 18938..20131 | - | 1194 | WP_000450494.1 | GTP-binding protein | - |
| LO740_RS23785 (23210) | 23210..23503 | + | 294 | WP_000738422.1 | increased serum survival lipoprotein Iss | - |
| LO740_RS23790 (23561) | 23561..23760 | - | 200 | Protein_20 | lysis protein | - |
| LO740_RS23795 (24314) | 24314..25338 | + | 1025 | Protein_21 | integrase core domain-containing protein | - |
| LO740_RS23800 (26649) | 26649..27764 | + | 1116 | WP_001318220.1 | Elloramycin glycosyltransferase ElmGT | VF |
| LO740_RS23805 (27904) | 27904..31563 | + | 3660 | WP_001442133.1 | Multidrug efflux ATP-binding/permease protein | VF |
| LO740_RS23810 (31667) | 31667..32896 | + | 1230 | WP_000933672.1 | Enterochelin esterase | VF |
| LO740_RS23815 (32981) | 32981..33937 | + | 957 | WP_000271277.1 | Ferri-bacillibactin esterase BesA | VF |
| LO740_RS23820 (33982) | 33982..36159 | - | 2178 | WP_001222186.1 | Ferric enterobactin receptor | VF |
| LO740_RS23825 (37014) | 37014..38048 | - | 1035 | WP_001190234.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| LO740_RS23830 (38229) | 38229..38530 | + | 302 | Protein_28 | hypothetical protein | - |
| LO740_RS23835 (38608) | 38608..38916 | - | 309 | WP_000377483.1 | DUF6404 family protein | - |
| LO740_RS23840 (39069) | 39069..39194 | - | 126 | Protein_30 | type II toxin-antitoxin system toxin YacB | - |
| LO740_RS23845 (39194) | 39194..39462 | - | 269 | Protein_31 | type II toxin-antitoxin system antitoxin YacA | - |
| LO740_RS23850 (40073) | 40073..41347 | + | 1275 | WP_000489608.1 | HlyD family secretion protein | - |
| LO740_RS23855 (41340) | 41340..43436 | + | 2097 | WP_000184924.1 | microcin H47 export transporter peptidase/ATP-binding subunit MchF | - |
| LO740_RS23860 (43606) | 43606..43917 | - | 312 | WP_001259758.1 | colicin V | - |
| LO740_RS23865 (43895) | 43895..44134 | - | 240 | WP_274491474.1 | colicin transporter | - |
| LO740_RS23870 (44253) | 44253..44696 | + | 444 | WP_001323891.1 | dehydrogenase | - |
| LO740_RS23875 (44668) | 44668..45072 | + | 405 | WP_001389361.1 | hypothetical protein | - |
| LO740_RS23880 (45074) | 45074..45343 | + | 270 | WP_000379710.1 | SemiSWEET transporter | - |
| LO740_RS23885 (45340) | 45340..45606 | + | 267 | WP_001017350.1 | FAD-dependent oxidoreductase | - |
| LO740_RS23890 (45662) | 45662..46114 | - | 453 | WP_000670963.1 | acyltransferase | - |
| LO740_RS23895 (46407) | 46407..46667 | + | 261 | WP_000343091.1 | hypothetical protein | - |
| LO740_RS23900 (46664) | 46664..47254 | + | 591 | WP_001350923.1 | hypothetical protein | - |
| LO740_RS23905 (47316) | 47316..47492 | - | 177 | Protein_43 | DUF6404 family protein | - |
| LO740_RS23910 (47540) | 47540..49078 | - | 1539 | WP_000099202.1 | IS66 family transposase ISEc22 | Transposase |
| LO740_RS23915 (49223) | 49223..49998 | - | 776 | Protein_45 | IS21-like element ISSso4 family helper ATPase IstB | - |
| LO740_RS23920 (50015) | 50015..51550 | - | 1536 | Protein_46 | IS21 family transposase | - |
| LO740_RS23925 (51797) | 51797..52117 | - | 321 | Protein_47 | IS66 family transposase ISKpn24 | Transposase |
| LO740_RS23930 (52114) | 52114..52518 | - | 405 | WP_000839181.1 | IS66 family transposase ISEc22 | Transposase |
| LO740_RS23935 (52768) | 52768..53103 | + | 336 | WP_001080729.1 | colicin 1A immunity protein | - |
| LO740_RS23940 (53125) | 53125..55005 | - | 1881 | WP_001283335.1 | colicin Ia central receptor-binding domain-containing protein | - |
| LO740_RS23945 (55191) | 55191..56039 | - | 849 | WP_001057989.1 | 3'-5' exonuclease | - |
| LO740_RS23950 (56085) | 56085..56363 | - | 279 | WP_001384452.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| LO740_RS23955 (56363) | 56363..56632 | - | 270 | WP_000079941.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| LO740_RS23960 (57548) | 57548..58405 | - | 858 | WP_000130940.1 | incFII family plasmid replication initiator RepA | - |
| LO740_RS23965 (58398) | 58398..58445 | - | 48 | WP_077822033.1 | hypothetical protein | - |
| LO740_RS23970 (58436) | 58436..58672 | + | 237 | WP_223368648.1 | replication protein RepA | - |
| LO740_RS23975 (58698) | 58698..58958 | - | 261 | WP_000083818.1 | replication regulatory protein RepA | - |
| LO740_RS23980 (59048) | 59048..59404 | - | 357 | Protein_58 | thermonuclease family protein | - |
| LO740_RS23985 (59647) | 59647..59859 | - | 213 | WP_001311693.1 | hypothetical protein | - |
| LO740_RS23990 (59997) | 59997..60557 | - | 561 | WP_000139359.1 | fertility inhibition protein FinO | - |
| LO740_RS23995 (60612) | 60612..61357 | - | 746 | Protein_61 | conjugal transfer pilus acetylase TraX | - |
| LO740_RS24000 (61377) | 61377..66647 | - | 5271 | WP_274491475.1 | Multifunctional conjugation protein TraI | Relaxase |
| LO740_RS24005 (66647) | 66647..68827 | - | 2181 | WP_001493790.1 | type IV conjugative transfer system coupling protein TraD | - |
| LO740_RS24010 (69079) | 69079..69810 | - | 732 | WP_001447147.1 | conjugal transfer complement resistance protein TraT | - |
| LO740_RS24015 (69842) | 69842..70345 | - | 504 | WP_000605510.1 | hypothetical protein | - |
| LO740_RS24020 (70360) | 70360..73182 | - | 2823 | WP_001007012.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| LO740_RS24025 (73179) | 73179..74552 | - | 1374 | WP_001137358.1 | conjugal transfer pilus assembly protein TraH | - |
| LO740_RS24030 (74552) | 74552..74914 | - | 363 | WP_071779407.1 | P-type conjugative transfer protein TrbJ | - |
| LO740_RS24035 (74844) | 74844..75389 | - | 546 | WP_000052618.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| LO740_RS24040 (75376) | 75376..75660 | - | 285 | WP_000624110.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| LO740_RS24045 (75779) | 75779..76126 | - | 348 | WP_001287676.1 | conjugal transfer protein TrbA | - |
| LO740_RS24050 (76142) | 76142..76885 | - | 744 | WP_001030389.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| LO740_RS24055 (76878) | 76878..77135 | - | 258 | WP_000864325.1 | conjugal transfer protein TrbE | - |
| LO740_RS24060 (77162) | 77162..78970 | - | 1809 | WP_000821846.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| LO740_RS24065 (78967) | 78967..79605 | - | 639 | WP_022630459.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| LO740_RS24070 (79614) | 79614..80606 | - | 993 | WP_000830839.1 | conjugal transfer pilus assembly protein TraU | - |
| LO740_RS24075 (80603) | 80603..81235 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| LO740_RS24080 (81232) | 81232..81618 | - | 387 | WP_000214082.1 | type-F conjugative transfer system protein TrbI | - |
| LO740_RS24085 (81615) | 81615..84242 | - | 2628 | WP_001064251.1 | type IV secretion system protein TraC | - |
| LO740_RS24090 (84402) | 84402..84623 | - | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| LO740_RS24095 (84758) | 84758..85273 | - | 516 | WP_000809841.1 | type IV conjugative transfer system lipoprotein TraV | - |
| LO740_RS24100 (85270) | 85270..85521 | - | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| LO740_RS24105 (85533) | 85533..85730 | - | 198 | WP_001324648.1 | conjugal transfer protein TrbD | - |
| LO740_RS24110 (85717) | 85717..86235 | - | 519 | WP_274491476.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| LO740_RS24115 (86297) | 86297..87724 | - | 1428 | WP_000146685.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| LO740_RS24120 (87724) | 87724..88452 | - | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| LO740_RS24125 (88439) | 88439..89005 | - | 567 | WP_000399785.1 | type IV conjugative transfer system protein TraE | - |
| LO740_RS24130 (89027) | 89027..89338 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| LO740_RS24135 (89353) | 89353..89718 | - | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| LO740_RS24140 (89751) | 89751..90152 | - | 402 | WP_001369361.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| LO740_RS24145 (90245) | 90245..90934 | - | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| LO740_RS24150 (91122) | 91122..91505 | - | 384 | WP_001151524.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| LO740_RS24155 (91875) | 91875..92384 | + | 510 | WP_000759163.1 | hypothetical protein | VF |
| LO740_RS24160 (92680) | 92680..93501 | - | 822 | WP_001234468.1 | DUF932 domain-containing protein | - |
| LO740_RS24165 (93620) | 93620..93907 | - | 288 | WP_000107520.1 | hypothetical protein | - |
| LO740_RS24170 (94208) | 94208..94505 | + | 298 | Protein_96 | hypothetical protein | - |
| LO740_RS24175 (94806) | 94806..94928 | - | 123 | WP_223195199.1 | Hok/Gef family protein | - |
| LO740_RS24180 (94873) | 94873..94986 | - | 114 | Protein_98 | DUF5431 family protein | - |
| - (95020) | 95020..95231 | + | 212 | NuclAT_0 | - | - |
| - (95020) | 95020..95231 | - | 212 | NuclAT_0 | - | - |
| - (95020) | 95020..95231 | - | 212 | NuclAT_0 | - | - |
| - (95020) | 95020..95231 | - | 212 | NuclAT_0 | - | - |
| - (95020) | 95020..95231 | - | 212 | NuclAT_0 | - | - |
| LO740_RS24185 (95176) | 95176..95962 | - | 787 | Protein_99 | plasmid SOS inhibition protein A | - |
| LO740_RS24190 (95959) | 95959..96393 | - | 435 | WP_000845922.1 | conjugation system SOS inhibitor PsiB | - |
| LO740_RS24195 (96448) | 96448..98406 | - | 1959 | WP_000117202.1 | ParB/RepB/Spo0J family partition protein | - |
| LO740_RS24200 (98470) | 98470..98703 | - | 234 | WP_000005988.1 | DUF905 family protein | - |
| LO740_RS24205 (98801) | 98801..99298 | - | 498 | Protein_103 | single-stranded DNA-binding protein | - |
| LO740_RS24210 (99599) | 99599..100018 | + | 420 | WP_015056142.1 | hypothetical protein | - |
| LO740_RS24215 (100104) | 100104..100667 | - | 564 | WP_001332335.1 | class I SAM-dependent methyltransferase | - |
| LO740_RS24220 (100715) | 100715..101539 | - | 825 | Protein_106 | hydrolase | - |
| LO740_RS24225 (101541) | 101541..102296 | - | 756 | WP_001282653.1 | IS21 family transposase ISSso4 | Transposase |
| LO740_RS24230 (102313) | 102313..103848 | - | 1536 | WP_045147483.1 | IS21 family transposase ISSso4 | Transposase |
| LO740_RS24235 (104080) | 104080..104721 | - | 642 | Protein_109 | DUF3560 domain-containing protein | - |
| LO740_RS24240 (104773) | 104773..105003 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| LO740_RS24245 (105520) | 105520..105773 | + | 254 | Protein_111 | hypothetical protein | - |
| LO740_RS24250 (105997) | 105997..106179 | - | 183 | WP_001027505.1 | hypothetical protein | - |
| LO740_RS24255 (106179) | 106179..106640 | - | 462 | WP_042007484.1 | DUF1380 family protein | - |
| LO740_RS24260 (106640) | 106640..107065 | - | 426 | WP_001198922.1 | antirestriction protein | - |
| LO740_RS24265 (107467) | 107467..108438 | + | 972 | WP_274491464.1 | IS110 family transposase ISEc32 | Transposase |
| LO740_RS24270 (108699) | 108699..108911 | - | 213 | WP_000092896.1 | hypothetical protein | - |
| LO740_RS24275 (108924) | 108924..109499 | - | 576 | WP_000343071.1 | hypothetical protein | - |
| LO740_RS24280 (109568) | 109568..109915 | - | 348 | WP_001350917.1 | hypothetical protein | - |
| LO740_RS24285 (109912) | 109912..110081 | - | 170 | Protein_119 | hypothetical protein | - |
| LO740_RS24290 (110718) | 110718..111689 | - | 972 | WP_000817028.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| LO740_RS24295 (111689) | 111689..112855 | - | 1167 | WP_001238646.1 | Sporulation initiation inhibitor protein Soj | VF |
| LO740_RS24305 (114078) | 114078..114173 | - | 96 | WP_000609144.1 | DinQ-like type I toxin DqlB | - |
| LO740_RS24310 (114996) | 114996..115091 | - | 96 | WP_000609147.1 | DinQ-like type I toxin DqlB | - |
| LO740_RS24315 (115460) | 115460..115627 | - | 168 | WP_000638861.1 | hypothetical protein | - |
| LO740_RS24320 (115877) | 115877..117379 | - | 1503 | WP_000715081.1 | hypothetical protein | - |
| LO740_RS24325 (117996) | 117996..118421 | - | 426 | WP_012300440.1 | hypothetical protein | - |
| LO740_RS24330 (118563) | 118563..119042 | + | 480 | WP_000190053.1 | hypothetical protein | - |
| LO740_RS24335 (119482) | 119482..119907 | + | 426 | WP_025492103.1 | hypothetical protein | - |
| LO740_RS24345 (121123) | 121123..123324 | - | 2202 | WP_000973517.1 | Ferric aerobactin receptor | VF |
| LO740_RS24350 (123350) | 123350..124683 | - | 1334 | Protein_132 | L-lysine N6-monooxygenase | VF |
| LO740_RS24355 (124680) | 124680..126422 | - | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| LO740_RS24360 (126422) | 126422..127369 | - | 948 | WP_000011907.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| LO740_RS24365 (127370) | 127370..129094 | - | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| LO740_RS24370 (129230) | 129230..130423 | + | 1194 | WP_000095526.1 | MFS transporter | - |
| LO740_RS24375 (130803) | 130803..131183 | - | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| LO740_RS24380 (131524) | 131524..131937 | - | 414 | Protein_138 | phosphopyruvate hydratase | - |
| LO740_RS24385 (131935) | 131935..132192 | + | 258 | Protein_139 | Tn3 family transposase | - |
| LO740_RS24390 (132426) | 132426..133283 | - | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| LO740_RS24395 (133280) | 133280..134137 | - | 858 | WP_000992806.1 | Manganese transport system membrane protein MntB | ARG |
| LO740_RS24400 (134134) | 134134..134961 | - | 828 | WP_000983710.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| LO740_RS24405 (134961) | 134961..135875 | - | 915 | WP_000949004.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| LO740_RS24410 (136232) | 136232..136929 | + | 698 | Protein_144 | IS1 family transposase IS1S | Transposase |
| LO740_RS24415 (137109) | 137109..137622 | - | 514 | Protein_145 | DUF4113 domain-containing protein | - |
| LO740_RS24420 (137683) | 137683..137787 | - | 105 | Protein_146 | AAA family ATPase | - |
| LO740_RS24425 (137789) | 137789..138112 | - | 324 | Protein_147 | IS21 family transposase IS21 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|