MGE detailed information
MGE type: Prophage MGE length: 88682 bp
Accession: NZ_CP086624 Location: 2311119..2399800 Organism: Escherichia coli strain RIVM_C037791 Replicon: chromosome
Accession: NZ_CP086624 Location: 2311119..2399800 Organism: Escherichia coli strain RIVM_C037791 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LN354_RS11185 () | 2308167..2309138 | - | 972 | WP_000564730.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| LN354_RS11190 () | 2309135..2309878 | - | 744 | WP_000019591.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| LN354_RS11195 () | 2309919..2310314 | - | 396 | WP_000252980.1 | MAPEG family protein | - |
| LN354_RS11200 () | 2310367..2311137 | - | 771 | WP_042196262.1 | DUF72 domain-containing protein | - |
| LN354_RS11205 () | 2311119..2312432 | - | 1314 | WP_000362005.1 | Putative defective protein IntQ ; Integrase | Integrase |
| LN354_RS11210 () | 2312488..2312724 | - | 237 | WP_000528718.1 | excisionase family protein | - |
| LN354_RS11215 () | 2312733..2312879 | - | 147 | WP_001030156.1 | hypothetical protein | - |
| LN354_RS11220 () | 2312883..2313125 | - | 243 | WP_000457723.1 | DUF4222 domain-containing protein | - |
| LN354_RS11225 () | 2313210..2313554 | - | 345 | WP_021519728.1 | hypothetical protein | - |
| LN354_RS11230 () | 2313551..2313718 | - | 168 | WP_021519727.1 | hypothetical protein | - |
| LN354_RS11235 () | 2313729..2313992 | - | 264 | WP_000224227.1 | hypothetical protein | - |
| LN354_RS11240 () | 2314279..2314404 | - | 126 | Protein_2202 | hypothetical protein | - |
| LN354_RS11245 () | 2314406..2315221 | - | 816 | WP_021519725.1 | ead/Ea22-like family protein | - |
| LN354_RS11250 () | 2315208..2315522 | - | 315 | WP_021519724.1 | hypothetical protein | - |
| LN354_RS11255 () | 2315476..2315793 | - | 318 | WP_000179800.1 | DUF4752 family protein | - |
| LN354_RS11260 () | 2316042..2316623 | - | 582 | WP_001199104.1 | hypothetical protein | - |
| LN354_RS11265 () | 2316629..2316817 | - | 189 | WP_021556324.1 | hypothetical protein | - |
| LN354_RS11270 () | 2317012..2317218 | - | 207 | WP_000141093.1 | hypothetical protein | - |
| LN354_RS11275 () | 2317509..2318009 | - | 501 | WP_021556323.1 | helix-turn-helix domain-containing protein | - |
| LN354_RS11280 () | 2318113..2318769 | - | 657 | WP_000838344.1 | S24 family peptidase | - |
| LN354_RS11285 () | 2318881..2319108 | + | 228 | WP_000177358.1 | hypothetical protein | - |
| LN354_RS11290 () | 2319105..2319812 | + | 708 | WP_001551257.1 | Rha family transcriptional regulator | - |
| LN354_RS11295 () | 2319921..2320775 | + | 855 | WP_001551256.1 | Rha family phage regulatory protein | - |
| LN354_RS11300 () | 2320772..2320966 | + | 195 | WP_000626793.1 | hypothetical protein | - |
| LN354_RS11305 () | 2320963..2321187 | + | 225 | WP_000618007.1 | hypothetical protein | - |
| LN354_RS11310 () | 2321184..2321483 | + | 300 | WP_000995578.1 | hypothetical protein | - |
| LN354_RS11315 () | 2321480..2322466 | + | 987 | WP_032301910.1 | hypothetical protein | - |
| LN354_RS11320 () | 2322477..2323376 | + | 900 | WP_000988266.1 | ATP-binding protein | - |
| LN354_RS11325 () | 2323373..2324773 | + | 1401 | WP_000203849.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| LN354_RS11330 () | 2324770..2325027 | + | 258 | WP_001065354.1 | hypothetical protein | - |
| LN354_RS11335 () | 2325079..2326068 | + | 990 | WP_032283452.1 | DUF968 domain-containing protein | - |
| LN354_RS11340 () | 2326086..2326466 | + | 381 | WP_001204806.1 | antiterminator Q family protein | - |
| LN354_RS11345 () | 2326682..2326879 | + | 198 | WP_000917767.1 | hypothetical protein | - |
| LN354_RS11350 () | 2327031..2328080 | + | 1050 | WP_000024332.1 | site-specific DNA-methyltransferase | - |
| LN354_RS11370 () | 2328485..2328634 | - | 150 | Protein_2225 | hypothetical protein | - |
| LN354_RS11375 () | 2328822..2329037 | + | 216 | WP_000839574.1 | class II holin family protein | - |
| LN354_RS11380 () | 2329042..2329392 | + | 351 | WP_192514396.1 | YdfR family protein | - |
| LN354_RS11385 () | 2329456..2329989 | + | 534 | WP_000992100.1 | lysozyme | - |
| LN354_RS11390 () | 2330206..2330391 | + | 186 | WP_001228685.1 | Rz1 family lipoprotein | - |
| LN354_RS11395 () | 2330609..2330875 | + | 267 | WP_001100260.1 | hypothetical protein | - |
| LN354_RS11400 () | 2330881..2331420 | - | 540 | WP_000351660.1 | YfbU family protein | - |
| LN354_RS11405 () | 2331559..2331909 | + | 351 | WP_001514288.1 | HNH endonuclease | - |
| LN354_RS11410 () | 2332057..2332539 | + | 483 | WP_001330091.1 | phage terminase small subunit P27 family | - |
| LN354_RS11415 () | 2332539..2334296 | + | 1758 | WP_001140907.1 | terminase large subunit | - |
| LN354_RS11420 () | 2334293..2334454 | + | 162 | WP_000811487.1 | hypothetical protein | - |
| LN354_RS11425 () | 2334444..2335670 | + | 1227 | WP_000923132.1 | phage portal protein | - |
| LN354_RS11430 () | 2335663..2336262 | + | 600 | WP_000999828.1 | HK97 family phage prohead protease | - |
| LN354_RS11435 () | 2336277..2337494 | + | 1218 | WP_000766109.1 | phage major capsid protein | - |
| LN354_RS11440 () | 2337571..2337888 | + | 318 | WP_000719066.1 | head-tail connector protein | - |
| LN354_RS11445 () | 2337897..2338235 | + | 339 | WP_001147816.1 | phage head closure protein | - |
| LN354_RS11450 () | 2338232..2338681 | + | 450 | WP_023910305.1 | HK97 gp10 family phage protein | - |
| LN354_RS11455 () | 2338678..2339022 | + | 345 | WP_001206698.1 | DUF3168 domain-containing protein | - |
| LN354_RS11460 () | 2339082..2339786 | + | 705 | WP_000097528.1 | immunoglobulin domain-containing protein | - |
| LN354_RS11465 () | 2339801..2340172 | + | 372 | WP_000164661.1 | phage tail assembly chaperone | - |
| LN354_RS11470 () | 2340184..2340474 | + | 291 | WP_001211636.1 | DUF4035 domain-containing protein | - |
| LN354_RS11475 () | 2340521..2343760 | + | 3240 | WP_000224011.1 | phage tail tape measure protein | - |
| LN354_RS11480 () | 2343753..2344094 | + | 342 | WP_001115183.1 | phage tail protein | - |
| LN354_RS11485 () | 2344094..2344792 | + | 699 | WP_001152453.1 | phage minor tail protein L | - |
| LN354_RS11490 () | 2344797..2345540 | + | 744 | WP_000194743.1 | C40 family peptidase | - |
| LN354_RS11495 () | 2345438..2346085 | + | 648 | WP_021516997.1 | tail assembly protein | - |
| LN354_RS11500 () | 2346146..2349625 | + | 3480 | WP_192514397.1 | host specificity protein J | - |
| LN354_RS11505 () | 2349693..2350292 | + | 600 | WP_192514398.1 | Outer membrane protein X | VF |
| LN354_RS11510 () | 2350357..2352423 | + | 2067 | WP_229315503.1 | prophage tail fiber N-terminal domain-containing protein | - |
| LN354_RS11515 () | 2352420..2352698 | + | 279 | WP_001204581.1 | hypothetical protein | - |
| LN354_RS11520 () | 2352708..2353001 | + | 294 | WP_001555069.1 | hypothetical protein | - |
| LN354_RS11525 () | 2353030..2353143 | + | 114 | Protein_2256 | tail fiber assembly protein | - |
| LN354_RS11530 () | 2353116..2353262 | + | 147 | WP_001420444.1 | hypothetical protein | - |
| LN354_RS11535 () | 2353259..2353507 | - | 249 | WP_001217553.1 | DinI-like family protein | - |
| LN354_RS11540 () | 2353770..2353865 | - | 96 | Protein_2259 | hypothetical protein | - |
| LN354_RS11545 () | 2353862..2354428 | - | 567 | WP_001551241.1 | hydrolase | - |
| LN354_RS11550 () | 2354738..2356510 | + | 1773 | WP_001551240.1 | aspartate--tRNA ligase | - |
| LN354_RS11555 () | 2356628..2357080 | + | 453 | WP_001308712.1 | dihydroneopterin triphosphate diphosphatase | - |
| LN354_RS11560 () | 2357109..2357849 | + | 741 | WP_000907234.1 | putative transcriptional regulatory protein YebC | VF |
| LN354_RS11565 () | 2357884..2358405 | + | 522 | WP_001551239.1 | crossover junction endodeoxyribonuclease RuvC | - |
| LN354_RS11570 () | 2358407..2359009 | - | 603 | WP_001024929.1 | YebB family permuted papain-like enzyme | - |
| LN354_RS11575 () | 2359080..2359145 | + | 66 | WP_010723105.1 | stress response small protein YobI | - |
| LN354_RS11580 () | 2359284..2359895 | + | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| LN354_RS11585 () | 2359904..2360914 | + | 1011 | WP_000568522.1 | Holliday junction branch migration DNA helicase RuvB | - |
| LN354_RS11590 () | 2361064..2361849 | - | 786 | WP_000571479.1 | High-affinity zinc uptake system membrane protein ZnuB | VF |
| LN354_RS11595 () | 2361846..2362601 | - | 756 | WP_000202996.1 | Zinc import ATP-binding protein ZnuC | VF |
| LN354_RS11600 () | 2362680..2363612 | + | 933 | WP_011076428.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| LN354_RS11605 () | 2363628..2364950 | + | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| LN354_RS11610 () | 2365070..2366041 | + | 972 | WP_001551238.1 | Lipid A biosynthesis myristoyltransferase | VF |
| LN354_RS11615 () | 2366173..2367615 | - | 1443 | WP_000091148.1 | pyruvate kinase | - |
| LN354_RS11620 () | 2367743..2368612 | - | 870 | WP_001056694.1 | DNA-binding transcriptional regulator HexR | - |
| LN354_RS11625 () | 2368950..2370425 | + | 1476 | WP_000301727.1 | glucose-6-phosphate dehydrogenase | - |
| LN354_RS11630 () | 2370660..2372471 | + | 1812 | WP_001069467.1 | phosphogluconate dehydratase | - |
| LN354_RS11635 () | 2372508..2373149 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| LN354_RS11640 () | 2373204..2374382 | - | 1179 | WP_001551236.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| LN354_RS11645 () | 2374516..2374806 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| LN354_RS11650 () | 2374873..2375229 | + | 357 | WP_001295500.1 | protein YebF | - |
| LN354_RS11655 () | 2375556..2376215 | + | 660 | WP_000024733.1 | tellurite resistance TerB family protein | - |
| LN354_RS11660 () | 2376379..2377548 | - | 1170 | WP_001551234.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| LN354_RS11665 () | 2377605..2378030 | + | 426 | WP_000064873.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| LN354_RS11670 () | 2378187..2380247 | + | 2061 | WP_001551233.1 | oligopeptidase B | - |
| LN354_RS11675 () | 2380244..2380906 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LN354_RS11680 () | 2380930..2381586 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LN354_RS11685 () | 2381688..2381918 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LN354_RS11690 () | 2382057..2382431 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LN354_RS11695 () | 2382435..2383307 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| LN354_RS11700 () | 2383320..2383661 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2383689..2383960 | - | 272 | - | - | Antitoxin Detail |
| - | 2383819..2383922 | + | 104 | - | - | Toxin Detail |
| LN354_RS11705 () | 2384057..2384713 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| LN354_RS11710 () | 2384714..2384905 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LN354_RS11715 () | 2385010..2385246 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LN354_RS11720 () | 2385364..2386803 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LN354_RS11725 () | 2386883..2389516 | - | 2634 | WP_001306757.1 | hypothetical protein | VF |
| LN354_RS11730 () | 2389485..2390768 | - | 1284 | WP_001316436.1 | membrane integrity lipid transport subunit YebS | - |
| LN354_RS11735 () | 2390898..2391395 | + | 498 | WP_001043876.1 | L-methionine (R)-S-oxide reductase | - |
| LN354_RS11740 () | 2391492..2392190 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| LN354_RS11745 () | 2392210..2394258 | + | 2049 | WP_001055785.1 | carboxy terminal-processing peptidase | - |
| LN354_RS11750 () | 2394450..2395331 | + | 882 | WP_000984517.1 | protease HtpX | - |
| LN354_RS11755 () | 2395377..2396750 | - | 1374 | WP_001551227.1 | MFS transporter | - |
| LN354_RS11760 () | 2396927..2397718 | + | 792 | WP_001262179.1 | DNA-binding transcriptional regulator KdgR | - |
| LN354_RS11765 () | 2397862..2398101 | - | 240 | WP_001211011.1 | YobH family protein | - |
| LN354_RS11770 () | 2398260..2398403 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| LN354_RS11775 () | 2398478..2398765 | + | 288 | WP_001006855.1 | YebO family protein | - |
| LN354_RS11780 () | 2399435..2399578 | + | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| LN354_RS11785 () | 2399591..2399800 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| LN354_RS11790 () | 2399966..2400775 | + | 810 | WP_000010109.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| LN354_RS11795 () | 2400772..2401338 | - | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| LN354_RS11800 () | 2401767..2402225 | - | 459 | WP_000156255.1 | DUF986 family protein | - |
| LN354_RS11805 () | 2402280..2403131 | - | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| LN354_RS11810 () | 2403144..2403944 | - | 801 | WP_000406928.1 | PTS mannose transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|