MGE detailed information
MGE type: Prophage MGE length: 74951 bp
Accession: NZ_CP086334 Location: 4048005..4122955 Organism: Escherichia coli strain EBJ003 Replicon: chromosome
Accession: NZ_CP086334 Location: 4048005..4122955 Organism: Escherichia coli strain EBJ003 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5N12_RS19620 (4043153) | 4043153..4046245 | - | 3093 | WP_021523277.1 | beta-galactosidase subunit alpha | - |
| C5N12_RS19625 (4046429) | 4046429..4047412 | - | 984 | WP_000212458.1 | transcriptional regulator EbgR | - |
| C5N12_RS19630 (4047631) | 4047631..4047963 | + | 333 | WP_000450588.1 | tRNA-binding protein | - |
| C5N12_RS19635 (4048005) | 4048005..4049384 | - | 1380 | WP_001309772.1 | Putrescine aminotransferase | VF |
| C5N12_RS19640 (4049802) | 4049802..4051322 | + | 1521 | WP_000094730.1 | Aerotaxis receptor | VF |
| C5N12_RS19645 (4051429) | 4051429..4052052 | - | 624 | WP_000018005.1 | DNA-binding transcriptional regulator NfeR | - |
| C5N12_RS19650 (4052329) | 4052329..4053093 | + | 765 | WP_001065877.1 | NADPH-dependent ferric chelate reductase NfeF | - |
| C5N12_RS19655 (4053390) | 4053390..4054706 | + | 1317 | WP_000290290.1 | Prophage integrase IntA ; Integrase | Integrase |
| C5N12_RS19660 (4054836) | 4054836..4055432 | + | 597 | WP_000268404.1 | hypothetical protein | - |
| C5N12_RS19665 (4055515) | 4055515..4057119 | - | 1605 | WP_000256688.1 | hypothetical protein | - |
| C5N12_RS19670 (4057899) | 4057899..4058126 | + | 228 | WP_000265818.1 | AlpA family phage regulatory protein | - |
| C5N12_RS19675 (4058189) | 4058189..4058935 | + | 747 | WP_024201514.1 | hypothetical protein | - |
| C5N12_RS19680 (4059157) | 4059157..4059717 | + | 561 | WP_000135718.1 | hypothetical protein | - |
| C5N12_RS19685 (4060099) | 4060099..4060713 | + | 615 | WP_000628304.1 | inovirus Gp2 family protein | - |
| C5N12_RS19690 (4060741) | 4060741..4061307 | + | 567 | WP_000287905.1 | inovirus-type Gp2 protein | - |
| C5N12_RS19695 (4061514) | 4061514..4062500 | - | 987 | WP_001354443.1 | IS3 family transposase IS2 | Transposase |
| C5N12_RS19700 (4062580) | 4062580..4063284 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| C5N12_RS19705 (4063670) | 4063670..4064086 | + | 417 | WP_014839980.1 | Glutathione transferase FosA | ARG |
| C5N12_RS19710 (4064091) | 4064091..4064609 | - | 519 | WP_014839979.1 | FidL-like protein | - |
| C5N12_RS19715 (4064609) | 4064609..4065397 | - | 789 | WP_014839978.1 | winged helix-turn-helix domain-containing protein | - |
| C5N12_RS19720 (4065417) | 4065417..4065842 | - | 426 | Protein_3846 | TetR/AcrR family transcriptional regulator | - |
| C5N12_RS19725 (4065897) | 4065897..4066601 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| C5N12_RS19730 (4066649) | 4066649..4067419 | + | 771 | Protein_3848 | replication initiation protein RepM | - |
| C5N12_RS19735 (4067486) | 4067486..4068028 | + | 543 | WP_004896925.1 | plasmid replication DNA-binding protein | - |
| C5N12_RS19740 (4068387) | 4068387..4069271 | - | 885 | WP_000155092.1 | hypothetical protein | ARG |
| C5N12_RS19745 (4069327) | 4069327..4070802 | - | 1476 | WP_000052512.1 | putative ABC transporter ATP-binding protein YbiT | ARG |
| C5N12_RS19750 (4071201) | 4071201..4072385 | - | 1185 | WP_002001451.1 | IS4 family transposase ISEc29 | Transposase |
| C5N12_RS19755 (4072434) | 4072434..4072619 | + | 186 | WP_002026779.1 | hypothetical protein | - |
| C5N12_RS19760 (4073101) | 4073101..4073874 | - | 774 | WP_000359986.1 | 16S rRNA (guanine(1405)-N(7))-methyltransferase | ARG |
| C5N12_RS19765 (4074200) | 4074200..4075039 | - | 840 | Protein_3855 | IS5 family transposase ISEc35 | Transposase |
| C5N12_RS19770 (4075273) | 4075273..4076814 | - | 1542 | WP_000050481.1 | IS91 family transposase ISVsa3 | Transposase |
| C5N12_RS19775 (4077219) | 4077219..4078058 | - | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| C5N12_RS19780 (4078052) | 4078052..4078399 | - | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| C5N12_RS19785 (4078622) | 4078622..4079074 | - | 453 | WP_001749986.1 | hypothetical protein | ARG |
| C5N12_RS19790 (4079159) | 4079159..4079791 | - | 633 | WP_000186237.1 | Chloramphenicol acetyltransferase | VF |
| C5N12_RS19795 (4079929) | 4079929..4080759 | - | 831 | WP_001334766.1 | Beta-lactamase OXA-1 | ARG |
| C5N12_RS19800 (4080890) | 4080890..4081444 | - | 555 | WP_063840321.1 | Aminoglycoside N(6')-acetyltransferase type 1 | ARG |
| C5N12_RS19805 (4081588) | 4081588..4082292 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| C5N12_RS19810 (4082361) | 4082361..4083539 | - | 1179 | WP_001065546.1 | GIY-YIG nuclease family protein | - |
| C5N12_RS19815 (4083532) | 4083532..4085577 | - | 2046 | WP_001060305.1 | DEAD/DEAH box helicase | - |
| C5N12_RS19820 (4085574) | 4085574..4088360 | - | 2787 | WP_001385107.1 | class I SAM-dependent DNA methyltransferase | - |
| C5N12_RS19825 (4088608) | 4088608..4088973 | + | 366 | Protein_3867 | transposase | - |
| C5N12_RS19830 (4089113) | 4089113..4089532 | + | 420 | WP_032313936.1 | IS66 family transposase ISEc43 | Transposase |
| C5N12_RS19835 (4089529) | 4089529..4089603 | + | 75 | Protein_3869 | IS66 family transposase ISEc47 | Transposase |
| C5N12_RS19840 (4089832) | 4089832..4090014 | - | 183 | WP_000282126.1 | hypothetical protein | - |
| C5N12_RS19845 (4090345) | 4090345..4091217 | + | 873 | WP_058343187.1 | GTPase family protein | - |
| C5N12_RS19850 (4091590) | 4091590..4094436 | + | 2847 | WP_229019969.1 | Ag43/Cah family autotransporter adhesin | - |
| C5N12_RS19855 (4094763) | 4094763..4095581 | + | 819 | WP_001234702.1 | DUF932 domain-containing protein | - |
| C5N12_RS19860 (4095672) | 4095672..4096157 | + | 486 | WP_000214317.1 | antirestriction protein | - |
| C5N12_RS19865 (4096172) | 4096172..4096648 | + | 477 | WP_001186747.1 | RadC family protein | - |
| C5N12_RS19870 (4096717) | 4096717..4096938 | + | 222 | WP_000692312.1 | DUF987 domain-containing protein | - |
| C5N12_RS19875 (4097018) | 4097018..4097386 | + | 369 | WP_053271974.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| C5N12_RS19880 (4097476) | 4097476..4097859 | + | 384 | WP_000854822.1 | type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA | Toxin Detail |
| C5N12_RS19885 (4097850) | 4097850..4098338 | + | 489 | WP_001177592.1 | DUF5983 family protein | - |
| C5N12_RS19890 (4098350) | 4098350..4098547 | + | 198 | WP_000839263.1 | DUF957 domain-containing protein | - |
| C5N12_RS19895 (4098644) | 4098644..4099489 | + | 846 | WP_040234917.1 | DUF4942 domain-containing protein | - |
| C5N12_RS19905 (4099788) | 4099788..4100294 | + | 507 | WP_000228937.1 | G/U mismatch-specific DNA glycosylase | - |
| C5N12_RS19910 (4100373) | 4100373..4102214 | - | 1842 | WP_000437371.1 | RNA polymerase sigma factor RpoD | - |
| C5N12_RS19915 (4102409) | 4102409..4104154 | - | 1746 | WP_000918837.1 | DNA primase | - |
| C5N12_RS19920 (4104265) | 4104265..4104480 | - | 216 | WP_001144069.1 | 30S ribosomal protein S21 | - |
| C5N12_RS19925 (4104718) | 4104718..4105731 | + | 1014 | WP_001264352.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| C5N12_RS19930 (4105774) | 4105774..4107237 | - | 1464 | WP_001521359.1 | L-tartrate/succinate antiporter | - |
| C5N12_RS19935 (4107286) | 4107286..4107891 | - | 606 | WP_000722957.1 | L(+)-tartrate dehydratase subunit beta | - |
| C5N12_RS19940 (4107888) | 4107888..4108799 | - | 912 | WP_020233691.1 | L(+)-tartrate dehydratase subunit alpha | - |
| C5N12_RS19945 (4109006) | 4109006..4109938 | + | 933 | WP_001521355.1 | DNA-binding transcriptional activator TtdR | - |
| C5N12_RS19950 (4109951) | 4109951..4110568 | - | 618 | WP_001272796.1 | glycerol-3-phosphate 1-O-acyltransferase PlsY | - |
| C5N12_RS19955 (4110673) | 4110673..4111041 | + | 369 | WP_001295541.1 | bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase | - |
| C5N12_RS19960 (4111132) | 4111132..4111953 | + | 822 | WP_001305111.1 | undecaprenyl-diphosphate phosphatase | - |
| C5N12_RS19965 (4112034) | 4112034..4113272 | - | 1239 | WP_000708491.1 | fused tRNA nucleotidyltransferase/2',3'-cyclic phosphodiesterase/2' nucleotidase/phosphatase Cca | - |
| C5N12_RS19970 (4113336) | 4113336..4113956 | - | 621 | WP_001125331.1 | TIGR04211 family SH3 domain-containing protein | - |
| C5N12_RS19975 (4114198) | 4114198..4115499 | + | 1302 | WP_020233689.1 | inorganic triphosphatase | - |
| C5N12_RS19980 (4115522) | 4115522..4118362 | + | 2841 | WP_001301081.1 | bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase | - |
| C5N12_RS19985 (4118410) | 4118410..4119843 | + | 1434 | WP_000869178.1 | Bifunctional protein HldE | VF |
| C5N12_RS19990 (4119963) | 4119963..4120022 | - | 60 | WP_010723221.1 | type I toxin-antitoxin system toxin IbsE | - |
| - (4119923) | 4119923..4120064 | + | 142 | NuclAT_2 | - | - |
| - (4119923) | 4119923..4120064 | + | 142 | NuclAT_2 | - | - |
| - (4119923) | 4119923..4120064 | + | 142 | NuclAT_2 | - | - |
| - (4119923) | 4119923..4120064 | + | 142 | NuclAT_2 | - | - |
| - (4119923) | 4119923..4120064 | + | 142 | NuclAT_3 | - | - |
| - (4119923) | 4119923..4120064 | + | 142 | NuclAT_3 | - | - |
| - (4119923) | 4119923..4120064 | + | 142 | NuclAT_3 | - | - |
| - (4119923) | 4119923..4120064 | + | 142 | NuclAT_3 | - | - |
| C5N12_RS19995 (4120338) | 4120338..4120397 | - | 60 | WP_001387081.1 | type I toxin-antitoxin system Ibs family toxin | - |
| - (4120298) | 4120298..4120440 | + | 143 | NuclAT_1 | - | - |
| - (4120298) | 4120298..4120440 | + | 143 | NuclAT_1 | - | - |
| - (4120298) | 4120298..4120440 | + | 143 | NuclAT_1 | - | - |
| - (4120298) | 4120298..4120440 | + | 143 | NuclAT_1 | - | - |
| - (4120298) | 4120298..4120440 | + | 143 | NuclAT_4 | - | - |
| - (4120298) | 4120298..4120440 | + | 143 | NuclAT_4 | - | - |
| - (4120298) | 4120298..4120440 | + | 143 | NuclAT_4 | - | - |
| - (4120298) | 4120298..4120440 | + | 143 | NuclAT_4 | - | - |
| C5N12_RS20000 (4120638) | 4120638..4122299 | - | 1662 | WP_001311137.1 | flotillin family protein | - |
| C5N12_RS20005 (4122326) | 4122326..4122955 | - | 630 | WP_000599926.1 | DUF1449 family protein | - |
| C5N12_RS20010 (4123224) | 4123224..4123424 | + | 201 | WP_000350095.1 | cell surface composition regulator GlgS | - |
| C5N12_RS20015 (4123467) | 4123467..4124531 | - | 1065 | WP_021523275.1 | fimbrial protein | - |
| C5N12_RS20020 (4124533) | 4124533..4125282 | - | 750 | WP_001269824.1 | molecular chaperone | - |
| C5N12_RS20025 (4125298) | 4125298..4127802 | - | 2505 | WP_000277103.1 | fimbria/pilus outer membrane usher protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|