MGE detailed information
MGE type: Prophage MGE length: 62343 bp
Accession: NZ_CP085202 Location: 1809376..1871718 Organism: Shigella flexneri strain P099 Replicon: chromosome
Accession: NZ_CP085202 Location: 1809376..1871718 Organism: Shigella flexneri strain P099 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUX27_RS08640 () | 1804402..1804674 | + | 273 | WP_001259256.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| IUX27_RS08645 () | 1804708..1805405 | + | 698 | WP_232111816.1 | IS1 family transposase | - |
| IUX27_RS08650 () | 1805427..1805681 | + | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | - |
| IUX27_RS08655 () | 1805764..1806588 | + | 825 | WP_000754740.1 | SDR family oxidoreductase | - |
| IUX27_RS08660 () | 1806634..1807617 | + | 984 | WP_000803326.1 | LysR substrate-binding domain-containing protein | - |
| IUX27_RS08665 () | 1807778..1807840 | + | 63 | WP_097433929.1 | membrane protein YoeI | - |
| IUX27_RS08670 () | 1807830..1809188 | + | 1359 | WP_000019203.1 | putrescine/proton symporter PlaP | - |
| IUX27_RS08675 () | 1809367..1810425 | + | 1059 | WP_000492293.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| IUX27_RS08680 () | 1810439..1810666 | + | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
| IUX27_RS08685 () | 1810709..1812133 | - | 1425 | WP_000132548.1 | exodeoxyribonuclease I | - |
| IUX27_RS08690 () | 1812315..1813151 | + | 837 | Protein_1684 | Prophage integrase IntA ; Integrase | Integrase |
| IUX27_RS08695 () | 1813233..1813907 | + | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| IUX27_RS08700 () | 1813904..1814254 | + | 351 | WP_005048975.1 | IS66 family transposase ISSfl3 | Transposase |
| IUX27_RS08705 () | 1814251..1815156 | + | 906 | Protein_1687 | IS66 family transposase ISSfl3 | Transposase |
| IUX27_RS08710 () | 1815246..1816474 | + | 1229 | WP_134797556.1 | IS3 family transposase IS2 | Transposase |
| IUX27_RS08715 () | 1816487..1816774 | + | 288 | Protein_1689 | transposase | - |
| IUX27_RS08720 () | 1816839..1817995 | + | 1157 | WP_248501132.1 | IS3 family transposase IS600 | Transposase |
| IUX27_RS08725 () | 1818039..1818455 | + | 417 | Protein_1691 | IS66 family transposase ISSfl3 | Transposase |
| IUX27_RS08730 () | 1818485..1818838 | + | 354 | Protein_1692 | hypothetical protein ; Integrase | Integrase |
| IUX27_RS08735 () | 1818890..1819276 | - | 387 | Protein_1693 | IS3 family transposase ISLad1 | Transposase |
| IUX27_RS08740 () | 1819310..1820911 | - | 1602 | WP_244758355.1 | IS66 family transposase ISSfl3 | Transposase |
| IUX27_RS08745 () | 1820908..1821087 | - | 180 | Protein_1695 | IS66 family insertion sequence element accessory protein TnpB | - |
| IUX27_RS08750 () | 1821143..1822352 | + | 1210 | Protein_1696 | IS3 family transposase IS629 | Transposase |
| IUX27_RS08755 () | 1822397..1822567 | - | 171 | Protein_1697 | IS66 family transposase ISSfl3 | Transposase |
| IUX27_RS08760 () | 1822564..1823238 | - | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| IUX27_RS08765 () | 1823323..1823607 | + | 285 | Protein_1699 | hypothetical protein | - |
| IUX27_RS08770 () | 1823779..1824108 | + | 330 | WP_000450409.1 | DUF496 family protein | - |
| IUX27_RS08775 () | 1824209..1824343 | - | 135 | WP_001297944.1 | EutP/PduV family microcompartment system protein | - |
| IUX27_RS08780 () | 1824445..1824591 | + | 147 | Protein_1702 | transposase domain-containing protein | - |
| IUX27_RS08785 () | 1824969..1826178 | - | 1210 | Protein_1703 | IS3 family transposase IS629 | Transposase |
| IUX27_RS08790 () | 1826421..1827577 | + | 1157 | WP_094081493.1 | IS3 family transposase IS600 | Transposase |
| IUX27_RS08795 () | 1827589..1828098 | + | 510 | WP_000261572.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| IUX27_RS08800 () | 1828095..1828838 | + | 744 | WP_005049317.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| IUX27_RS08805 () | 1828850..1829929 | + | 1080 | WP_001165576.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| IUX27_RS08810 () | 1829991..1830926 | + | 936 | WP_000986341.1 | L,D-transpeptidase | - |
| IUX27_RS08820 () | 1831385..1832302 | + | 918 | WP_001011445.1 | nitrogen assimilation transcriptional regulator NAC | - |
| IUX27_RS08825 () | 1832404..1833354 | + | 951 | WP_001010988.1 | HTH-type transcriptional regulator Cbl | - |
| IUX27_RS08835 () | 1833628..1835099 | + | 1472 | Protein_1711 | toxic metabolite efflux MATE transporter YeeO | - |
| IUX27_RS08845 () | 1835731..1836447 | - | 717 | WP_000532920.1 | putative transcriptional regulatory protein YeeN | VF |
| IUX27_RS08850 () | 1836790..1838244 | - | 1455 | WP_001060217.1 | AMP nucleosidase | - |
| IUX27_RS08855 () | 1838346..1838552 | - | 207 | WP_000466572.1 | hypothetical protein | - |
| IUX27_RS08860 () | 1838553..1839752 | - | 1200 | Protein_1715 | IS3 family transposase IS600 | Transposase |
| IUX27_RS08865 () | 1839817..1840323 | - | 507 | Protein_1716 | MFS transporter | - |
| IUX27_RS08870 () | 1840379..1841547 | + | 1169 | WP_094081534.1 | IS3 family transposase ISLad1 | Transposase |
| IUX27_RS08875 () | 1841654..1842916 | - | 1263 | Protein_1718 | Prophage integrase IntA ; Integrase | Integrase |
| IUX27_RS08885 () | 1843254..1844051 | - | 798 | WP_001325918.1 | DgsA anti-repressor MtfA | - |
| IUX27_RS08895 () | 1844262..1845312 | - | 1051 | Protein_1720 | hypothetical protein ; Integrase | Integrase |
| IUX27_RS08900 () | 1845312..1845452 | - | 141 | Protein_1721 | DUF4224 domain-containing protein | - |
| IUX27_RS08905 () | 1845479..1845895 | + | 417 | WP_005069274.1 | hypothetical protein | - |
| - | 1846477..1846535 | - | 59 | - | - | Antitoxin Detail |
| IUX27_RS08910 () | 1846547..1846702 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| IUX27_RS08915 () | 1846870..1847148 | + | 279 | WP_011069426.1 | hypothetical protein | - |
| IUX27_RS08920 () | 1847150..1848208 | + | 1059 | WP_001265248.1 | DUF968 domain-containing protein | - |
| IUX27_RS08925 () | 1848209..1848574 | + | 366 | WP_000140020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| IUX27_RS08930 () | 1848571..1849259 | + | 689 | Protein_1727 | bacteriophage antitermination protein Q | - |
| IUX27_RS08955 () | 1850055..1850270 | + | 216 | WP_000839572.1 | class II holin family protein | - |
| IUX27_RS08960 () | 1850369..1851043 | + | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| IUX27_RS08965 () | 1851040..1851390 | + | 351 | WP_005048975.1 | IS66 family transposase ISSfl3 | Transposase |
| IUX27_RS08970 () | 1851387..1852199 | + | 813 | Protein_1731 | IS66 family transposase ISSfl3 | Transposase |
| IUX27_RS08975 () | 1852265..1853421 | + | 1157 | WP_134795494.1 | IS3 family transposase ISSd1 | Transposase |
| IUX27_RS08980 () | 1853462..1853941 | + | 480 | Protein_1733 | DUF4376 domain-containing protein | - |
| IUX27_RS08985 () | 1854121..1855764 | - | 1644 | WP_014532281.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| IUX27_RS08990 () | 1856080..1856748 | - | 669 | WP_000239881.1 | class I SAM-dependent methyltransferase | - |
| IUX27_RS08995 () | 1856805..1857074 | + | 270 | WP_000937511.1 | tail fiber assembly protein | - |
| IUX27_RS09000 () | 1858152..1858802 | - | 651 | WP_001007781.1 | metal-binding protein ZinT | - |
| IUX27_RS09005 () | 1859060..1859695 | - | 636 | WP_001240061.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| IUX27_RS09010 () | 1859696..1860700 | - | 1005 | Protein_1739 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| IUX27_RS09015 () | 1860809..1861222 | - | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| IUX27_RS09020 () | 1861355..1862026 | + | 672 | WP_001347103.1 | putative transcriptional regulatory protein YedW | VF |
| IUX27_RS09030 () | 1862850..1863578 | + | 729 | Protein_1743 | two-component system sensor histidine kinase HprS | - |
| IUX27_RS09035 () | 1863686..1864537 | - | 852 | WP_000218218.1 | protein deglycase HchA | - |
| IUX27_RS09045 () | 1865908..1866087 | - | 180 | Protein_1746 | porin | - |
| IUX27_RS09050 () | 1866181..1867409 | + | 1229 | WP_111778310.1 | IS3 family transposase IS2 | Transposase |
| IUX27_RS09055 () | 1867418..1868182 | - | 765 | Protein_1748 | porin | - |
| IUX27_RS09060 () | 1868248..1869395 | + | 1148 | WP_085949497.1 | IS3 family transposase ISEhe3 | Transposase |
| IUX27_RS09065 () | 1869396..1869653 | + | 258 | WP_032155863.1 | cell division protein DrpB | - |
| IUX27_RS09070 () | 1869732..1870233 | + | 502 | Protein_1751 | HD domain-containing protein | - |
| IUX27_RS09075 () | 1870300..1871718 | + | 1419 | WP_001157215.1 | DNA-cytosine methyltransferase | - |
| IUX27_RS09080 () | 1871699..1872169 | + | 471 | WP_000228688.1 | VSPR family DNA mismatch endonuclease | - |
| IUX27_RS09085 () | 1872158..1873078 | - | 921 | WP_001212270.1 | drug/metabolite exporter YedA | - |
| IUX27_RS09090 () | 1873251..1874168 | + | 918 | WP_000922688.1 | DUF808 domain-containing protein | - |
| IUX27_RS09095 () | 1874247..1874429 | + | 183 | WP_000009302.1 | DUF2158 domain-containing protein | - |
| IUX27_RS09100 () | 1874600..1876294 | + | 1695 | Protein_1757 | cellulose biosynthesis regulator diguanylate cyclase DgcQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|