MGE detailed information
MGE type: Conjugative plasmid MGE length: 49706 bp
Accession: NZ_CP085186 Location: 1..49706 Organism: Escherichia coli strain EC7518 Replicon: plasmid pEC7518-49k
Accession: NZ_CP085186 Location: 1..49706 Organism: Escherichia coli strain EC7518 Replicon: plasmid pEC7518-49k
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LIN51_RS24980 (1) | 1..858 | + | 858 | WP_032495102.1 | incFII family plasmid replication initiator RepA | - |
| LIN51_RS24985 (1797) | 1797..2450 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| LIN51_RS24990 (2543) | 2543..2800 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| LIN51_RS24995 (2733) | 2733..3134 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| LIN51_RS25000 (3383) | 3383..3798 | + | 416 | Protein_4 | IS1 family transposase IS1R | Transposase |
| LIN51_RS25005 (3834) | 3834..4379 | - | 546 | Protein_5 | Tn3 family transposase TnpA_Tn3 | Transposase |
| LIN51_RS25010 (4445) | 4445..5149 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LIN51_RS25015 (5219) | 5219..5410 | + | 192 | Protein_7 | IS1380 family transposase | - |
| LIN51_RS25020 (5660) | 5660..6535 | + | 876 | WP_013188475.1 | Beta-lactamase Toho-1 | ARG |
| LIN51_RS25025 (6570) | 6570..6872 | + | 303 | Protein_9 | transposase | - |
| LIN51_RS25030 (7045) | 7045..8244 | - | 1200 | WP_000948429.1 | IS91 family transposase ISSbo1 | Transposase |
| LIN51_RS25035 (8254) | 8254..8442 | - | 189 | WP_000957857.1 | hypothetical protein | - |
| LIN51_RS25040 (8534) | 8534..9070 | + | 537 | WP_064441864.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| LIN51_RS25045 (9253) | 9253..10113 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| LIN51_RS25050 (10283) | 10283..11038 | + | 756 | WP_012372818.1 | 16S rRNA (guanine(1405)-N(7))-methyltransferase | ARG |
| LIN51_RS25055 (11119) | 11119..11433 | - | 315 | Protein_15 | hypothetical protein | - |
| LIN51_RS25060 (11488) | 11488..12192 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| LIN51_RS25065 (12258) | 12258..12323 | + | 66 | Protein_17 | IS1 family transposase | - |
| LIN51_RS25070 (13772) | 13772..14006 | + | 235 | Protein_18 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LIN51_RS25075 (14134) | 14134..14337 | + | 204 | Protein_19 | hypothetical protein | - |
| LIN51_RS25080 (14538) | 14538..14888 | - | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| LIN51_RS25085 (14891) | 14891..15853 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| LIN51_RS25090 (16000) | 16000..16293 | + | 294 | WP_032146011.1 | hypothetical protein | - |
| LIN51_RS25095 (16370) | 16370..17053 | + | 684 | WP_000085883.1 | DNA methylase | - |
| LIN51_RS25100 (17054) | 17054..17275 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| LIN51_RS25105 (17289) | 17289..17723 | + | 435 | WP_000274503.1 | DUF1380 family protein | - |
| LIN51_RS25110 (17774) | 17774..18550 | + | 777 | WP_001383963.1 | hypothetical protein | - |
| LIN51_RS25115 (18968) | 18968..19393 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| LIN51_RS25120 (19440) | 19440..19862 | + | 423 | WP_000271762.1 | DUF1380 family protein | - |
| LIN51_RS25125 (19859) | 19859..20050 | + | 192 | WP_001027493.1 | hypothetical protein | - |
| LIN51_RS25130 (20364) | 20364..22031 | - | 1668 | WP_012372796.1 | group II intron reverse transcriptase/maturase | - |
| LIN51_RS25135 (22760) | 22760..22914 | - | 155 | Protein_31 | hypothetical protein | - |
| LIN51_RS25140 (23431) | 23431..23661 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| LIN51_RS25145 (23713) | 23713..25074 | + | 1362 | WP_000170695.1 | DUF3560 domain-containing protein | - |
| LIN51_RS25150 (25121) | 25121..25684 | + | 564 | WP_015059007.1 | class I SAM-dependent methyltransferase | - |
| LIN51_RS25155 (25770) | 25770..26219 | - | 450 | Protein_35 | hypothetical protein | - |
| LIN51_RS25160 (26521) | 26521..27048 | + | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| LIN51_RS25165 (27106) | 27106..27339 | + | 234 | WP_000006003.1 | DUF905 family protein | - |
| LIN51_RS25170 (27400) | 27400..29423 | + | 2024 | Protein_38 | ParB/RepB/Spo0J family partition protein | - |
| LIN51_RS25175 (29492) | 29492..29926 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| LIN51_RS25180 (29923) | 29923..30685 | + | 763 | Protein_40 | plasmid SOS inhibition protein A | - |
| LIN51_RS25185 (30663) | 30663..30842 | - | 180 | WP_001309233.1 | hypothetical protein | - |
| - (30654) | 30654..30878 | + | 225 | NuclAT_0 | - | - |
| - (30654) | 30654..30878 | + | 225 | NuclAT_0 | - | - |
| - (30654) | 30654..30878 | + | 225 | NuclAT_0 | - | - |
| - (30654) | 30654..30878 | + | 225 | NuclAT_0 | - | - |
| LIN51_RS25190 (30864) | 30864..31013 | + | 150 | Protein_42 | plasmid maintenance protein Mok | - |
| LIN51_RS25195 (30955) | 30955..31080 | + | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| LIN51_RS25200 (31399) | 31399..31695 | - | 297 | Protein_44 | hypothetical protein | - |
| LIN51_RS25205 (31995) | 31995..32291 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| LIN51_RS25210 (32402) | 32402..33223 | + | 822 | WP_001234445.1 | DUF932 domain-containing protein | - |
| LIN51_RS25215 (33520) | 33520..34167 | - | 648 | WP_015059008.1 | hypothetical protein | VF |
| LIN51_RS25220 (34444) | 34444..34827 | + | 384 | WP_227311784.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| LIN51_RS25225 (35018) | 35018..35704 | + | 687 | WP_015059009.1 | PAS domain-containing protein | - |
| LIN51_RS25230 (35798) | 35798..36025 | + | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| LIN51_RS25235 (36059) | 36059..36424 | + | 366 | WP_021519752.1 | type IV conjugative transfer system pilin TraA | - |
| LIN51_RS25240 (36439) | 36439..36750 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| LIN51_RS25245 (36772) | 36772..37338 | + | 567 | WP_000399794.1 | type IV conjugative transfer system protein TraE | - |
| LIN51_RS25250 (37325) | 37325..38053 | + | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| LIN51_RS25255 (38053) | 38053..40512 | + | 2460 | WP_227311785.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| LIN51_RS25260 (40512) | 40512..45317 | + | 4806 | WP_227311786.1 | Multifunctional conjugation protein TraI | Relaxase |
| LIN51_RS25265 (45337) | 45337..46083 | + | 747 | WP_000205770.1 | conjugal transfer pilus acetylase TraX | - |
| LIN51_RS25270 (46138) | 46138..46698 | + | 561 | WP_000139328.1 | fertility inhibition protein FinO | - |
| LIN51_RS25275 (46830) | 46830..47030 | + | 201 | WP_015059022.1 | hypothetical protein | - |
| LIN51_RS25280 (47416) | 47416..48015 | + | 600 | WP_032083981.1 | PIN domain-containing protein | - |
| LIN51_RS25285 (48077) | 48077..48409 | + | 333 | WP_152916585.1 | hypothetical protein | - |
| - (48610) | 48610..48669 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (48610) | 48610..48669 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (48610) | 48610..48669 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (48610) | 48610..48669 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| LIN51_RS25290 (48714) | 48714..48863 | + | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| LIN51_RS25295 (49147) | 49147..49395 | + | 249 | WP_000083837.1 | replication regulatory protein RepA | - |
| LIN51_RS25300 (49510) | 49510..49694 | + | 185 | Protein_64 | protein CopA/IncA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|