MGE detailed information
MGE type: Conjugative plasmid MGE length: 93861 bp
Accession: NZ_CP084195 Location: 1..93861 Organism: Salmonella sp. A39 Replicon: plasmid unnamed1
Accession: NZ_CP084195 Location: 1..93861 Organism: Salmonella sp. A39 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDO68_RS23890 | 1291..2265 | - | 975 | WP_000064274.1 | ParB family protein | - |
| LDO68_RS23895 | 2265..3470 | - | 1206 | WP_000427676.1 | AAA family ATPase | - |
| LDO68_RS23900 | 3885..4826 | + | 942 | WP_000728917.1 | Recombination-promoting nuclease RpnA | VF |
| LDO68_RS23905 | 4823..5424 | - | 602 | Protein_4 | DUF2913 family protein | - |
| LDO68_RS23910 | 5481..5897 | - | 417 | WP_000988946.1 | hypothetical protein | - |
| LDO68_RS23915 | 6000..6416 | - | 417 | WP_001541564.1 | hypothetical protein | - |
| LDO68_RS23920 | 6502..7617 | - | 1116 | WP_001247118.1 | DNA-binding protein | - |
| LDO68_RS23925 | 7876..8364 | + | 489 | WP_001135407.1 | hypothetical protein | - |
| LDO68_RS23930 | 9019..9759 | + | 741 | WP_001541566.1 | carbonic anhydrase family protein | - |
| LDO68_RS23935 | 9966..10526 | + | 561 | WP_187790973.1 | Tn3 family transposase ISPsy42 | Transposase |
| LDO68_RS23940 | 10510..12174 | + | 1665 | WP_000098783.1 | IS481 family transposase ISAzs36 | Transposase |
| LDO68_RS23945 | 12107..13132 | + | 1026 | WP_080247913.1 | ExeA family protein | - |
| LDO68_RS23950 | 13321..14358 | - | 1038 | WP_001121399.1 | IS630 family transposase ISEc33 | Transposase |
| LDO68_RS23955 | 14966..15859 | + | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| LDO68_RS23960 | 16033..16197 | + | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| LDO68_RS23965 | 16371..17138 | + | 768 | WP_080247914.1 | virulence protein SpvA | - |
| LDO68_RS23970 | 17101..17268 | + | 168 | WP_001526987.1 | hypothetical protein | - |
| LDO68_RS23975 | 17320..19095 | + | 1776 | WP_001676648.1 | Mono(ADP-ribosyl)transferase SpvB | VF |
| LDO68_RS23980 | 19376..20101 | + | 726 | WP_001122242.1 | MAPK phosphothreonine lyase | VF |
| LDO68_RS23985 | 20362..21011 | + | 650 | Protein_20 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| LDO68_RS23990 | 21138..21562 | - | 425 | Protein_21 | IS200-IS605 family transposase ISEc46 | Transposase |
| LDO68_RS23995 | 21619..21969 | + | 351 | WP_001541541.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| LDO68_RS24000 | 22036..22596 | - | 561 | WP_000900095.1 | Invasin | VF |
| LDO68_RS24005 | 22752..23039 | + | 288 | WP_071530243.1 | hypothetical protein | - |
| LDO68_RS24010 | 23316..23801 | - | 486 | WP_000905606.1 | membrane protein | - |
| LDO68_RS24015 | 23795..24283 | - | 489 | WP_001075507.1 | CaiF/GrlA family transcriptional regulator | - |
| LDO68_RS24020 | 24470..25021 | - | 552 | WP_000545754.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| LDO68_RS24025 | 25030..25812 | - | 783 | WP_000082169.1 | site-specific integrase | - |
| LDO68_RS24030 | 25847..26368 | - | 522 | WP_000198608.1 | hypothetical protein | - |
| LDO68_RS24035 | 26365..26655 | - | 291 | WP_001266176.1 | hypothetical protein | - |
| LDO68_RS24040 | 26657..26962 | - | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| LDO68_RS24045 | 26964..27182 | - | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| LDO68_RS24050 | 27858..28379 | + | 522 | WP_010999942.1 | hypothetical protein | - |
| LDO68_RS24055 | 28423..28851 | - | 429 | Protein_34 | hypothetical protein | - |
| LDO68_RS24060 | 28863..29159 | + | 297 | WP_001687482.1 | hypothetical protein | - |
| LDO68_RS24065 | 29653..30642 | + | 990 | WP_001527061.1 | RepB family plasmid replication initiator protein | - |
| LDO68_RS24070 | 30901..31345 | - | 445 | Protein_37 | tyrosine-type recombinase/integrase | - |
| LDO68_RS24075 | 31514..31895 | - | 382 | Protein_38 | YgiW/YdeI family stress tolerance OB fold protein | - |
| LDO68_RS24080 | 32614..32916 | + | 303 | WP_000979451.1 | Major pilu subunit operon regulatory protein PapB | VF |
| LDO68_RS24085 | 33191..33709 | + | 519 | WP_000748205.1 | hypothetical protein | VF |
| LDO68_RS24090 | 33937..36345 | + | 2409 | WP_000007893.1 | Outer membrane usher protein FimD | VF |
| LDO68_RS24095 | 36338..37030 | + | 693 | WP_001038510.1 | Chaperone protein FaeE | VF |
| LDO68_RS24100 | 37045..37602 | + | 558 | WP_010999940.1 | membrane protein | - |
| LDO68_RS24105 | 37855..38730 | + | 876 | WP_014343944.1 | hypothetical protein | - |
| LDO68_RS24110 | 39162..39374 | + | 213 | WP_000004313.1 | hypothetical protein | VF |
| LDO68_RS24115 | 39359..39709 | + | 351 | WP_001526811.1 | Transcriptional regulatory protein RcsB | VF |
| LDO68_RS24120 | 39954..40607 | + | 654 | WP_000178592.1 | DsbA family protein | - |
| LDO68_RS24125 | 40597..40743 | + | 147 | WP_001192557.1 | hypothetical protein | - |
| LDO68_RS24130 | 40740..41639 | + | 900 | WP_080247917.1 | YjiK family protein | - |
| LDO68_RS24135 | 41736..42494 | - | 759 | WP_000417898.1 | AraC family transcriptional regulator | - |
| LDO68_RS24140 | 42761..43318 | - | 558 | WP_000725062.1 | Attachment invasion locus protein | VF |
| LDO68_RS24145 | 43408..43602 | - | 195 | Protein_52 | SdiA-regulated domain-containing protein | - |
| LDO68_RS24150 | 44489..45370 | - | 882 | WP_001738692.1 | incFII family plasmid replication initiator RepA | - |
| LDO68_RS24155 | 45351..45428 | - | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| LDO68_RS24160 | 45678..45944 | - | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| LDO68_RS24165 | 46055..46621 | - | 567 | Protein_56 | phospholipase D family protein | - |
| LDO68_RS24170 | 46731..46886 | - | 156 | WP_000983042.1 | hypothetical protein | - |
| LDO68_RS24175 | 46899..47183 | - | 285 | WP_000477658.1 | hypothetical protein | - |
| LDO68_RS24180 | 47298..47861 | - | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
| LDO68_RS24185 | 47916..48656 | - | 741 | WP_000177629.1 | conjugal transfer pilus acetylase TraX | - |
| LDO68_RS24190 | 48676..53934 | - | 5259 | WP_000986921.1 | Multifunctional conjugation protein TraI | Relaxase |
| LDO68_RS24195 | 54016..54243 | + | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| LDO68_RS24200 | 54243..54641 | + | 399 | WP_000911322.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LDO68_RS24205 | 54650..56812 | - | 2163 | WP_000009318.1 | type IV conjugative transfer system coupling protein TraD | - |
| LDO68_RS24210 | 57189..57920 | - | 732 | WP_000782438.1 | conjugal transfer complement resistance protein TraT | - |
| LDO68_RS24215 | 57956..58450 | - | 495 | WP_010999946.1 | entry exclusion protein | - |
| LDO68_RS24220 | 58466..61288 | - | 2823 | WP_001007086.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| LDO68_RS24225 | 61285..62667 | - | 1383 | WP_001161719.1 | conjugal transfer pilus assembly protein TraH | - |
| LDO68_RS24230 | 62657..63205 | - | 549 | WP_000055840.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| LDO68_RS24235 | 63192..63485 | - | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| LDO68_RS24240 | 63699..64448 | - | 750 | WP_080247907.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| LDO68_RS24245 | 64460..64675 | - | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| LDO68_RS24250 | 64686..66513 | - | 1828 | Protein_73 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| LDO68_RS24255 | 66510..66929 | - | 420 | WP_001229397.1 | HNH endonuclease signature motif containing protein | - |
| LDO68_RS24260 | 66966..67604 | - | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| LDO68_RS24265 | 67589..67897 | - | 309 | WP_010999945.1 | hypothetical protein | - |
| LDO68_RS24270 | 67916..68908 | - | 993 | WP_000833320.1 | conjugal transfer pilus assembly protein TraU | - |
| LDO68_RS24275 | 68905..69537 | - | 633 | WP_000871995.1 | type-F conjugative transfer system protein TraW | - |
| LDO68_RS24280 | 69534..69920 | - | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| LDO68_RS24285 | 69895..72543 | - | 2649 | WP_080247908.1 | type IV secretion system protein TraC | - |
| LDO68_RS24290 | 72559..72822 | - | 264 | WP_001239255.1 | hypothetical protein | - |
| LDO68_RS24295 | 72939..73406 | - | 468 | WP_000549562.1 | hypothetical protein | - |
| LDO68_RS24300 | 73399..73620 | - | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| LDO68_RS24305 | 73755..74270 | - | 516 | WP_001079995.1 | type IV conjugative transfer system lipoprotein TraV | - |
| LDO68_RS24310 | 74267..74512 | - | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| LDO68_RS24315 | 74490..75086 | - | 597 | WP_000527896.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| LDO68_RS24320 | 75076..76497 | - | 1422 | WP_000146700.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| LDO68_RS24325 | 76497..77237 | - | 741 | WP_001230719.1 | type-F conjugative transfer system secretin TraK | - |
| LDO68_RS24330 | 77224..77790 | - | 567 | WP_000399768.1 | type IV conjugative transfer system protein TraE | - |
| LDO68_RS24335 | 77812..78123 | - | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| LDO68_RS24340 | 78138..78500 | - | 363 | WP_001274201.1 | type IV conjugative transfer system pilin TraA | - |
| LDO68_RS24345 | 78542..78769 | - | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| LDO68_RS24350 | 78863..79549 | - | 687 | WP_000336297.1 | PAS domain-containing protein | - |
| LDO68_RS24355 | 79742..80122 | - | 381 | WP_001151546.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| LDO68_RS24360 | 80537..81007 | + | 471 | WP_001526856.1 | hypothetical protein | VF |
| LDO68_RS24365 | 81318..82136 | - | 819 | Protein_96 | DUF945 domain-containing protein | - |
| LDO68_RS24370 | 82239..82397 | - | 159 | WP_001704449.1 | hypothetical protein | - |
| LDO68_RS24375 | 82646..83383 | - | 738 | WP_080247910.1 | plasmid SOS inhibition protein A | - |
| LDO68_RS24380 | 83380..83814 | - | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| LDO68_RS24385 | 83854..85851 | - | 1998 | WP_000117513.1 | ParB/RepB/Spo0J family partition protein | - |
| LDO68_RS24390 | 85920..86162 | - | 243 | WP_000131520.1 | DUF905 domain-containing protein | - |
| LDO68_RS24395 | 86217..86735 | - | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| LDO68_RS24400 | 87466..87789 | - | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| LDO68_RS24405 | 88025..88459 | - | 435 | WP_000274533.1 | DUF1380 family protein | - |
| LDO68_RS24410 | 88526..88960 | - | 435 | WP_001200150.1 | antirestriction protein | - |
| LDO68_RS24415 | 89456..90220 | - | 765 | WP_001246548.1 | membrane protein | - |
| LDO68_RS24420 | 90292..90705 | - | 414 | WP_000990114.1 | DUF1380 family protein | - |
| LDO68_RS24425 | 90761..90982 | - | 222 | WP_001109588.1 | hypothetical protein | - |
| LDO68_RS24430 | 90982..91662 | - | 681 | WP_000088645.1 | DNA methylase | - |
| LDO68_RS24435 | 91825..92106 | + | 282 | WP_146671468.1 | hypothetical protein | - |
| LDO68_RS24440 | 92044..92400 | - | 357 | WP_000369839.1 | hypothetical protein | - |
| LDO68_RS24445 | 92393..92863 | - | 471 | WP_000490265.1 | hypothetical protein | - |
| LDO68_RS24450 | 93374..93796 | + | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|