MGE detailed information
MGE type: Prophage MGE length: 62674 bp
Accession: NZ_CP083877 Location: 3641521..3704194 Organism: Escherichia coli strain NDM4 Replicon: chromosome
Accession: NZ_CP083877 Location: 3641521..3704194 Organism: Escherichia coli strain NDM4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCE22_RS17575 (3638832) | 3638832..3639704 | - | 873 | WP_001407301.1 | GTPase family protein | - |
| LCE22_RS17580 (3639968) | 3639968..3641524 | + | 1557 | WP_000200813.1 | type I restriction-modification system subunit M | - |
| LCE22_RS17585 (3641521) | 3641521..3642735 | + | 1215 | WP_042047042.1 | restriction endonuclease subunit S | - |
| LCE22_RS17590 (3642857) | 3642857..3645973 | + | 3117 | WP_020233940.1 | HsdR family type I site-specific deoxyribonuclease | - |
| LCE22_RS17595 (3646121) | 3646121..3646915 | - | 795 | Protein_3438 | IS5 family transposase ISKpn26 | Transposase |
| LCE22_RS17600 (3646972) | 3646972..3647940 | - | 969 | WP_000654804.1 | IS5 family transposase IS903B | Transposase |
| LCE22_RS17605 (3648021) | 3648021..3648142 | - | 122 | Protein_3440 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| LCE22_RS17610 (3648172) | 3648172..3648645 | + | 474 | WP_224180650.1 | phage tail protein | - |
| LCE22_RS17615 (3648648) | 3648648..3648881 | + | 234 | WP_001619155.1 | hypothetical protein | - |
| LCE22_RS17620 (3648862) | 3648862..3649272 | - | 411 | WP_001032316.1 | tail fiber assembly protein | - |
| LCE22_RS17625 (3650166) | 3650166..3652301 | - | 2136 | Protein_3444 | prophage tail fiber N-terminal domain-containing protein | - |
| LCE22_RS17630 (3652366) | 3652366..3652965 | - | 600 | WP_001233083.1 | hypothetical protein | VF |
| LCE22_RS17635 (3653036) | 3653036..3656533 | - | 3498 | WP_108084474.1 | host specificity protein J | - |
| LCE22_RS17640 (3656594) | 3656594..3657166 | - | 573 | WP_000847704.1 | tail assembly protein | - |
| LCE22_RS17645 (3657163) | 3657163..3657906 | - | 744 | WP_045154394.1 | C40 family peptidase | - |
| LCE22_RS17650 (3657912) | 3657912..3658610 | - | 699 | WP_001152639.1 | phage minor tail protein L | - |
| LCE22_RS17655 (3658610) | 3658610..3658939 | - | 330 | WP_000847379.1 | phage tail protein | - |
| LCE22_RS17660 (3658936) | 3658936..3661515 | - | 2580 | WP_021548553.1 | phage tail tape measure protein | - |
| LCE22_RS17665 (3661508) | 3661508..3661942 | - | 435 | WP_000459458.1 | phage tail assembly protein T | - |
| LCE22_RS17670 (3661924) | 3661924..3662346 | - | 423 | WP_021548554.1 | phage minor tail protein G | - |
| LCE22_RS17675 (3662362) | 3662362..3663102 | - | 741 | WP_021548555.1 | phage tail protein | - |
| LCE22_RS17680 (3663110) | 3663110..3663505 | - | 396 | WP_021548556.1 | phage minor tail U family protein | - |
| LCE22_RS17685 (3663502) | 3663502..3664080 | - | 579 | WP_001518407.1 | phage tail protein | - |
| LCE22_RS17690 (3664092) | 3664092..3664445 | - | 354 | WP_029395143.1 | head-tail joining protein | - |
| LCE22_RS17695 (3664457) | 3664457..3664852 | - | 396 | WP_001468354.1 | DNA-packaging protein FI | - |
| LCE22_RS17700 (3664894) | 3664894..3665919 | - | 1026 | WP_029395141.1 | major capsid protein | - |
| LCE22_RS17705 (3665975) | 3665975..3666307 | - | 333 | WP_012304872.1 | head decoration protein | - |
| LCE22_RS17710 (3666317) | 3666317..3667636 | - | 1320 | WP_029395138.1 | S49 family peptidase | - |
| LCE22_RS17715 (3667617) | 3667617..3669218 | - | 1602 | WP_057077926.1 | phage portal protein | - |
| LCE22_RS17720 (3669215) | 3669215..3669421 | - | 207 | WP_000198149.1 | gpW family protein | - |
| LCE22_RS17725 (3669418) | 3669418..3671343 | - | 1926 | WP_001027321.1 | phage terminase large subunit family protein | - |
| LCE22_RS17730 (3671318) | 3671318..3671863 | - | 546 | WP_000453587.1 | DNA-packaging protein | - |
| LCE22_RS17735 (3672252) | 3672252..3672485 | + | 234 | WP_001663509.1 | YlcI/YnfO family protein | - |
| LCE22_RS17740 (3672542) | 3672542..3672952 | + | 411 | WP_000079508.1 | DUF1398 family protein | - |
| LCE22_RS17745 (3673303) | 3673303..3673455 | - | 153 | WP_001139678.1 | hypothetical protein | - |
| LCE22_RS17750 (3673443) | 3673443..3673880 | - | 438 | WP_001446997.1 | lysis protein | - |
| LCE22_RS17755 (3673877) | 3673877..3674353 | - | 477 | WP_060581801.1 | glycoside hydrolase family protein | - |
| LCE22_RS17760 (3674357) | 3674357..3674683 | - | 327 | WP_001120496.1 | phage holin, lambda family | - |
| LCE22_RS17765 (3675084) | 3675084..3675833 | + | 750 | WP_000907077.1 | TIGR04255 family protein | - |
| LCE22_RS17770 (3675849) | 3675849..3676193 | + | 345 | WP_125282403.1 | hypothetical protein | - |
| LCE22_RS17775 (3676197) | 3676197..3676811 | + | 615 | WP_000069422.1 | hypothetical protein | - |
| LCE22_RS17780 (3676837) | 3676837..3677181 | - | 345 | WP_001205456.1 | antiterminator Q family protein | - |
| LCE22_RS17785 (3677200) | 3677200..3678189 | - | 990 | WP_001433852.1 | DUF968 domain-containing protein | - |
| LCE22_RS17790 (3678197) | 3678197..3678994 | - | 798 | WP_060581690.1 | KilA-N domain-containing protein | - |
| LCE22_RS17795 (3679014) | 3679014..3679403 | - | 390 | WP_000767113.1 | RusA family crossover junction endodeoxyribonuclease | - |
| LCE22_RS17800 (3679400) | 3679400..3679726 | - | 327 | WP_000210164.1 | LexA family transcriptional regulator | - |
| LCE22_RS17805 (3679723) | 3679723..3680376 | - | 654 | WP_060581688.1 | phage N-6-adenine-methyltransferase | - |
| LCE22_RS17810 (3680376) | 3680376..3680870 | - | 495 | WP_224434057.1 | PerC family transcriptional regulator | - |
| LCE22_RS17815 (3680867) | 3680867..3681808 | - | 942 | WP_000104977.1 | helix-turn-helix domain-containing protein | - |
| LCE22_RS17820 (3681798) | 3681798..3681977 | - | 180 | WP_001250269.1 | DUF4222 domain-containing protein | - |
| LCE22_RS17825 (3682153) | 3682153..3682704 | - | 552 | WP_001434539.1 | protein YmfL | - |
| LCE22_RS17830 (3682742) | 3682742..3682942 | - | 201 | WP_000205494.1 | Cro/CI family transcriptional regulator | - |
| LCE22_RS17835 (3683040) | 3683040..3683666 | + | 627 | WP_000450735.1 | LexA family transcriptional regulator | - |
| LCE22_RS17840 (3683894) | 3683894..3684409 | - | 516 | WP_000559916.1 | hypothetical protein | - |
| LCE22_RS17845 (3684554) | 3684554..3684865 | + | 312 | Protein_3488 | hypothetical protein | - |
| LCE22_RS17850 (3684880) | 3684880..3685242 | + | 363 | WP_000135682.1 | protein YfdP | - |
| LCE22_RS17855 (3685308) | 3685308..3686132 | + | 825 | WP_057077927.1 | DUF2303 family protein | - |
| LCE22_RS17860 (3686260) | 3686260..3686796 | + | 537 | WP_000008200.1 | 5'-deoxynucleotidase | - |
| LCE22_RS17865 (3686787) | 3686787..3687149 | + | 363 | WP_001242749.1 | phage protein | - |
| LCE22_RS17870 (3687149) | 3687149..3687454 | + | 306 | WP_000206734.1 | protein YfdT | - |
| LCE22_RS17875 (3687370) | 3687370..3687804 | + | 435 | WP_077873866.1 | helix-turn-helix domain-containing protein | - |
| LCE22_RS17880 (3687726) | 3687726..3688844 | + | 1119 | WP_223350505.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| LCE22_RS17890 (3689049) | 3689049..3690302 | - | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
| LCE22_RS17895 (3690314) | 3690314..3691417 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| LCE22_RS17900 (3691705) | 3691705..3692760 | + | 1056 | WP_000749867.1 | phosphoporin PhoE | - |
| LCE22_RS17905 (3692799) | 3692799..3693200 | - | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| - (3693918) | 3693918..3693998 | - | 81 | NuclAT_13 | - | - |
| - (3693918) | 3693918..3693998 | - | 81 | NuclAT_13 | - | - |
| - (3693918) | 3693918..3693998 | - | 81 | NuclAT_13 | - | - |
| - (3693918) | 3693918..3693998 | - | 81 | NuclAT_13 | - | - |
| LCE22_RS17910 (3693258) | 3693258..3694502 | - | 1245 | WP_000189532.1 | esterase FrsA | - |
| LCE22_RS17915 (3694594) | 3694594..3695052 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| LCE22_RS17920 (3695313) | 3695313..3696770 | + | 1458 | WP_001292994.1 | cytosol nonspecific dipeptidase | - |
| LCE22_RS17925 (3696827) | 3696827..3697348 | - | 522 | Protein_3503 | peptide chain release factor H | - |
| LCE22_RS17930 (3697344) | 3697344..3697550 | - | 207 | Protein_3504 | RtcB family protein | - |
| LCE22_RS17935 (3697868) | 3697868..3698320 | - | 453 | WP_001059892.1 | GNAT family N-acetyltransferase | - |
| LCE22_RS17940 (3698330) | 3698330..3698728 | - | 399 | WP_001263489.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| LCE22_RS17945 (3698731) | 3698731..3699024 | - | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| LCE22_RS17950 (3699076) | 3699076..3700131 | - | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| LCE22_RS17955 (3700202) | 3700202..3700987 | - | 786 | WP_000207552.1 | hypothetical protein | VF |
| LCE22_RS17960 (3700959) | 3700959..3702671 | + | 1713 | Protein_3510 | hypothetical protein | VF |
| LCE22_RS17965 (3702895) | 3702895..3703392 | - | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| LCE22_RS17970 (3703568) | 3703568..3704317 | - | 750 | WP_000056849.1 | hypothetical protein | VF |
| LCE22_RS17975 (3704527) | 3704527..3704787 | + | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | - |
| LCE22_RS17980 (3704790) | 3704790..3705068 | + | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | - |
| LCE22_RS17985 (3705224) | 3705224..3705964 | + | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| LCE22_RS17990 (3705935) | 3705935..3706702 | - | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| LCE22_RS17995 (3706908) | 3706908..3707486 | - | 579 | WP_000284050.1 | D-sedoheptulose 7-phosphate isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|