MGE detailed information
MGE type: Prophage MGE length: 88323 bp
Accession: NZ_CP075113 Location: 2645888..2734210 Organism: Salmonella enterica subsp. enterica serovar Dublin strain CFSAN059898 Replicon: chromosome
Accession: NZ_CP075113 Location: 2645888..2734210 Organism: Salmonella enterica subsp. enterica serovar Dublin strain CFSAN059898 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCO47_RS12895 () | 2641617..2642075 | + | 459 | WP_000156283.1 | DUF986 family protein | - |
| CCO47_RS12900 () | 2642485..2643051 | + | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| CCO47_RS12905 () | 2643048..2643857 | - | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| CCO47_RS12910 () | 2643923..2645668 | - | 1746 | WP_000730323.1 | peptidoglycan glycosyltransferase FtsI | - |
| CCO47_RS12915 () | 2645888..2646097 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| CCO47_RS12920 () | 2646110..2646253 | - | 144 | WP_001675517.1 | DUF2627 domain-containing protein | - |
| CCO47_RS12925 () | 2646902..2647189 | - | 288 | WP_001000659.1 | YebO family protein | - |
| CCO47_RS12930 () | 2647260..2647403 | - | 144 | WP_000847421.1 | PhoP/PhoQ regulator MgrB | - |
| CCO47_RS12935 () | 2647561..2647800 | + | 240 | WP_001236777.1 | invasion protein YobH | - |
| CCO47_RS12940 () | 2648012..2648803 | - | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| CCO47_RS12945 () | 2648979..2650352 | + | 1374 | WP_000416139.1 | MFS transporter | - |
| CCO47_RS12950 () | 2650400..2651281 | - | 882 | WP_000984498.1 | protease HtpX | - |
| CCO47_RS12955 () | 2651474..2653522 | - | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| CCO47_RS12960 () | 2653542..2654228 | - | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| CCO47_RS12965 () | 2654326..2654823 | - | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| CCO47_RS12970 () | 2654952..2656235 | + | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| CCO47_RS12975 () | 2656204..2658837 | + | 2634 | WP_001574233.1 | hypothetical protein | VF |
| CCO47_RS12980 () | 2658915..2660354 | + | 1440 | WP_001531515.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CCO47_RS12985 () | 2660472..2660708 | + | 237 | WP_024131108.1 | YebV family protein | - |
| CCO47_RS12990 () | 2660819..2661010 | + | 192 | WP_000457838.1 | DUF1482 family protein | - |
| CCO47_RS12995 () | 2661029..2661679 | - | 651 | WP_000986173.1 | protein-serine/threonine phosphatase | - |
| CCO47_RS13000 () | 2661903..2662067 | - | 165 | WP_001134856.1 | membrane protein | - |
| CCO47_RS13005 () | 2662352..2663074 | - | 723 | WP_000182072.1 | hypothetical protein | VF |
| CCO47_RS13010 () | 2663758..2664099 | + | 342 | WP_001752424.1 | DUF1398 family protein | - |
| CCO47_RS13015 () | 2664481..2664957 | + | 477 | WP_000030946.1 | hypothetical protein | - |
| CCO47_RS13020 () | 2665330..2665749 | - | 420 | WP_000354407.1 | GNAT family N-acetyltransferase | - |
| CCO47_RS13025 () | 2666119..2666388 | + | 270 | WP_001752421.1 | hypothetical protein | - |
| CCO47_RS13030 () | 2666554..2666694 | + | 141 | WP_001617922.1 | hypothetical protein | - |
| CCO47_RS13035 () | 2666840..2668034 | - | 1195 | Protein_2568 | IS256 family transposase IS285 | Transposase |
| CCO47_RS13040 () | 2668105..2668526 | + | 422 | Protein_2569 | tyrosine-type recombinase/integrase | - |
| CCO47_RS13045 () | 2669822..2670737 | + | 916 | Protein_2570 | DMT family transporter | - |
| CCO47_RS13050 () | 2670870..2671028 | + | 159 | WP_000480735.1 | DUF5993 family protein | - |
| CCO47_RS13055 () | 2671038..2671652 | + | 615 | WP_000848073.1 | disulfide bond formation protein B | - |
| CCO47_RS24180 () | 2671979..2672211 | - | 233 | Protein_2573 | helix-turn-helix domain-containing protein | - |
| CCO47_RS13070 () | 2672833..2672934 | - | 102 | Protein_2574 | arsenic transporter | - |
| CCO47_RS24185 () | 2672925..2673104 | + | 180 | Protein_2575 | IS3 family transposase | - |
| CCO47_RS13075 () | 2673493..2673693 | + | 201 | WP_001751604.1 | PagK family vesicle-borne virulence factor | - |
| CCO47_RS13080 () | 2673790..2674265 | - | 476 | Protein_2577 | tail fiber assembly protein | - |
| CCO47_RS13085 () | 2674282..2674617 | - | 336 | Protein_2578 | macro domain-containing protein | - |
| CCO47_RS13090 () | 2674832..2675092 | - | 261 | Protein_2579 | DUF1441 family protein | - |
| CCO47_RS13095 () | 2675147..2675338 | + | 192 | WP_001034751.1 | hypothetical protein | - |
| CCO47_RS13100 () | 2675403..2675570 | + | 168 | WP_000789530.1 | lytic enzyme | - |
| CCO47_RS13105 () | 2675827..2676360 | - | 534 | WP_000055326.1 | DUF2514 domain-containing protein | - |
| CCO47_RS13110 () | 2676357..2676605 | - | 249 | Protein_2583 | glycoside hydrolase family 19 protein | - |
| CCO47_RS13115 () | 2676753..2677748 | + | 996 | Protein_2584 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| CCO47_RS13120 () | 2677778..2678857 | + | 1080 | WP_076097973.1 | hypothetical protein ; Integrase | Integrase |
| CCO47_RS13125 () | 2679811..2680611 | + | 801 | WP_001536069.1 | hypothetical protein | - |
| CCO47_RS13130 () | 2680640..2680881 | - | 242 | Protein_2587 | recombinase family protein | - |
| CCO47_RS13135 () | 2681091..2681813 | + | 723 | WP_000161701.1 | hypothetical protein | VF |
| CCO47_RS13140 () | 2682015..2682584 | - | 570 | WP_000143180.1 | tail fiber assembly protein | - |
| CCO47_RS13145 () | 2682584..2685001 | - | 2418 | WP_001574223.1 | prophage tail fiber N-terminal domain-containing protein | - |
| CCO47_RS13150 () | 2685055..2685297 | - | 243 | WP_000178848.1 | hypothetical protein | - |
| CCO47_RS13155 () | 2685336..2686199 | - | 864 | WP_072100756.1 | DUF1983 domain-containing protein | - |
| CCO47_RS13160 () | 2686239..2688688 | - | 2450 | Protein_2593 | host specificity protein J | - |
| CCO47_RS13165 () | 2688760..2689464 | - | 705 | WP_001576012.1 | tail assembly protein | - |
| CCO47_RS13170 () | 2689368..2690099 | - | 732 | WP_000606352.1 | C40 family peptidase | - |
| CCO47_RS13175 () | 2690109..2690804 | - | 696 | WP_001152416.1 | phage minor tail protein L | - |
| CCO47_RS13180 () | 2690894..2691427 | + | 534 | WP_000877926.1 | hypothetical protein | VF |
| CCO47_RS13185 () | 2691544..2692041 | - | 498 | WP_000725268.1 | hypothetical protein | VF |
| CCO47_RS13190 () | 2692140..2692472 | - | 333 | WP_000978295.1 | phage tail protein | - |
| CCO47_RS13195 () | 2692469..2695456 | - | 2988 | WP_077906652.1 | phage tail tape measure protein | - |
| CCO47_RS13200 () | 2695536..2695865 | - | 330 | WP_010989009.1 | phage tail assembly protein T | - |
| CCO47_RS13205 () | 2695862..2696260 | - | 399 | WP_000478858.1 | phage minor tail protein G | - |
| CCO47_RS13210 () | 2696306..2697055 | - | 750 | WP_000132757.1 | phage tail protein | - |
| CCO47_RS13215 () | 2697067..2697468 | - | 402 | WP_000196703.1 | phage minor tail U family protein | - |
| CCO47_RS13220 () | 2697465..2698031 | - | 567 | WP_000453192.1 | phage tail protein | - |
| CCO47_RS13225 () | 2698012..2698311 | - | 300 | WP_000774239.1 | ATP-binding protein | - |
| CCO47_RS13230 () | 2698304..2698627 | - | 324 | WP_001107908.1 | DUF2190 family protein | - |
| CCO47_RS13235 () | 2698718..2700799 | - | 2082 | WP_010989008.1 | hypothetical protein | VF |
| CCO47_RS13240 () | 2700723..2702270 | - | 1548 | WP_001009211.1 | phage portal protein | - |
| CCO47_RS13245 () | 2702267..2702473 | - | 207 | WP_000196190.1 | hypothetical protein | - |
| CCO47_RS13250 () | 2702470..2704608 | - | 2139 | WP_000989241.1 | phage terminase large subunit family protein | - |
| CCO47_RS13255 () | 2704565..2705098 | - | 534 | WP_000371784.1 | DUF1441 family protein | - |
| CCO47_RS13260 () | 2705306..2705785 | - | 480 | WP_001541990.1 | lysis protein | - |
| CCO47_RS13265 () | 2705803..2706255 | - | 453 | WP_000984586.1 | glycoside hydrolase family protein | - |
| CCO47_RS13270 () | 2706239..2706568 | - | 330 | WP_001574216.1 | phage holin, lambda family | - |
| CCO47_RS13275 () | 2706844..2707530 | + | 687 | WP_001574215.1 | type III secretion system effector protease GtgA | - |
| CCO47_RS13280 () | 2707891..2708340 | + | 450 | WP_000798708.1 | hypothetical protein | - |
| CCO47_RS13285 () | 2708714..2709241 | - | 528 | WP_000971762.1 | hypothetical protein | - |
| CCO47_RS13290 () | 2709335..2709982 | - | 648 | WP_001097219.1 | bacteriophage antitermination protein Q | - |
| CCO47_RS13295 () | 2709979..2710115 | - | 137 | Protein_2620 | YlcG family protein | - |
| CCO47_RS24190 () | 2710112..2710252 | - | 141 | Protein_2621 | recombination protein NinG | - |
| CCO47_RS13305 () | 2710336..2710935 | - | 600 | WP_000940753.1 | DUF1367 family protein | - |
| CCO47_RS13310 () | 2710999..2711217 | - | 219 | WP_001524708.1 | hypothetical protein | - |
| CCO47_RS24195 () | 2711519..2711617 | - | 99 | WP_223151200.1 | hypothetical protein | - |
| CCO47_RS13320 () | 2711936..2713915 | - | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| CCO47_RS13325 () | 2714312..2715442 | + | 1131 | WP_000529512.1 | GGDEF domain-containing protein | - |
| CCO47_RS13330 () | 2715729..2716124 | - | 396 | WP_000089417.1 | DUF977 family protein | - |
| CCO47_RS13335 () | 2716137..2716679 | - | 543 | WP_158000546.1 | replication protein P | - |
| CCO47_RS13340 () | 2716591..2717589 | - | 999 | WP_000729536.1 | DUF1376 domain-containing protein | - |
| CCO47_RS13345 () | 2717636..2718130 | - | 495 | WP_001574210.1 | toxin YdaT family protein | - |
| CCO47_RS13350 () | 2718117..2718371 | - | 255 | WP_001033912.1 | helix-turn-helix transcriptional regulator | - |
| CCO47_RS13355 () | 2718470..2718868 | + | 399 | WP_001574209.1 | helix-turn-helix domain-containing protein | - |
| CCO47_RS13360 () | 2719310..2719624 | - | 315 | WP_071591195.1 | hypothetical protein | - |
| CCO47_RS13365 () | 2719886..2720161 | + | 276 | WP_000103933.1 | hypothetical protein | - |
| CCO47_RS13370 () | 2720165..2720371 | + | 207 | WP_000682660.1 | cell division inhibitor protein | - |
| CCO47_RS13375 () | 2720447..2720782 | + | 336 | WP_000799627.1 | hypothetical protein | - |
| CCO47_RS13380 () | 2720923..2723613 | + | 2691 | WP_000023732.1 | exodeoxyribonuclease VIII | - |
| CCO47_RS13385 () | 2723606..2724436 | + | 831 | WP_001126030.1 | recombination protein RecT | - |
| CCO47_RS13390 () | 2724483..2724668 | + | 186 | WP_000280163.1 | DUF1187 family protein | - |
| CCO47_RS13395 () | 2724767..2725195 | + | 429 | WP_000743301.1 | hypothetical protein | - |
| CCO47_RS13400 () | 2725256..2725534 | + | 279 | WP_001675651.1 | excisionase | - |
| CCO47_RS13405 () | 2725509..2726588 | + | 1080 | WP_076031669.1 | hypothetical protein ; Integrase | Integrase |
| - | 2726726..2726871 | + | 146 | - | - | Antitoxin Detail |
| - | 2726728..2726831 | - | 104 | - | - | Toxin Detail |
| CCO47_RS13410 () | 2726971..2727324 | - | 354 | WP_000722372.1 | YebY family protein | - |
| CCO47_RS13415 () | 2727341..2728216 | - | 876 | WP_094912438.1 | copper homeostasis membrane protein CopD | - |
| CCO47_RS13420 () | 2728217..2728591 | - | 375 | WP_000168392.1 | CopC domain-containing protein YobA | - |
| CCO47_RS13425 () | 2728729..2728959 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| CCO47_RS13430 () | 2729067..2729723 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| CCO47_RS13435 () | 2729747..2730445 | + | 699 | WP_000944287.1 | exodeoxyribonuclease X | - |
| CCO47_RS13440 () | 2730482..2732533 | - | 2052 | WP_000936999.1 | oligopeptidase B | - |
| CCO47_RS13445 () | 2732746..2733405 | - | 660 | WP_000024709.1 | tellurite resistance TerB family protein | - |
| CCO47_RS13450 () | 2733499..2733852 | - | 354 | WP_001042123.1 | protein YebF | - |
| CCO47_RS13455 () | 2733920..2734210 | - | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| CCO47_RS13460 () | 2734341..2735519 | + | 1179 | WP_000173430.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| CCO47_RS13465 () | 2735619..2736260 | - | 642 | WP_000800494.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| CCO47_RS13470 () | 2736298..2738109 | - | 1812 | WP_001069124.1 | phosphogluconate dehydratase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|