MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 27336 bp
Accession: NZ_CP072118 Location: 981662..1008997 Organism: Clostridioides difficile isolate MAR286 Replicon: chromosome
Accession: NZ_CP072118 Location: 981662..1008997 Organism: Clostridioides difficile isolate MAR286 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J6L80_RS04870 (J6L80_04870) | 977530..977934 | + | 405 | WP_003427327.1 | DUF3139 domain-containing protein | - |
| J6L80_RS04875 (J6L80_04875) | 978630..979490 | + | 861 | WP_003427324.1 | PRD domain-containing protein | - |
| J6L80_RS04880 (J6L80_04880) | 979480..981351 | + | 1872 | WP_003427323.1 | beta-glucoside-specific PTS transporter subunit IIABC | - |
| J6L80_RS04885 (J6L80_04885) | 981662..984706 | + | 3045 | WP_021401955.1 | SrtB-anchored collagen-binding adhesin | - |
| J6L80_RS04890 (J6L80_04890) | 984939..985265 | + | 327 | WP_003417601.1 | YdcP family protein | - |
| J6L80_RS04895 (J6L80_04895) | 985281..985664 | + | 384 | WP_003423022.1 | YdcP family protein | - |
| J6L80_RS04900 (J6L80_04900) | 985832..986239 | + | 408 | WP_003423032.1 | helix-turn-helix transcriptional regulator | - |
| J6L80_RS04905 (J6L80_04905) | 986255..986581 | + | 327 | WP_003423033.1 | hypothetical protein | - |
| J6L80_RS04910 (J6L80_04910) | 986682..988076 | + | 1395 | WP_003423037.1 | FtsK/SpoIIIE domain-containing protein | - |
| J6L80_RS04915 (J6L80_04915) | 988260..989456 | + | 1197 | WP_003423038.1 | MobT family relaxase | - |
| J6L80_RS04920 (J6L80_04920) | 989469..989603 | + | 135 | WP_003423040.1 | DUF3789 domain-containing protein | - |
| J6L80_RS04925 (J6L80_04925) | 989604..989825 | + | 222 | WP_002323342.1 | hypothetical protein | - |
| J6L80_RS04930 (J6L80_04930) | 990029..990805 | + | 777 | WP_003423043.1 | helix-turn-helix transcriptional regulator | - |
| J6L80_RS04935 (J6L80_04935) | 990890..991186 | + | 297 | WP_003423044.1 | hypothetical protein | - |
| J6L80_RS04940 (J6L80_04940) | 991105..991608 | + | 504 | WP_003423046.1 | antirestriction protein ArdA | - |
| J6L80_RS04945 (J6L80_04945) | 991626..992129 | + | 504 | WP_003423048.1 | antirestriction protein ArdA | - |
| J6L80_RS04950 (J6L80_04950) | 992247..992645 | + | 399 | WP_004843362.1 | conjugal transfer protein | - |
| J6L80_RS04955 (J6L80_04955) | 992623..995073 | + | 2451 | WP_003423051.1 | ATP-binding protein | - |
| J6L80_RS04960 (J6L80_04960) | 995073..997268 | + | 2196 | WP_003423053.1 | YtxH domain-containing protein | - |
| J6L80_RS04965 (J6L80_04965) | 997265..998272 | + | 1008 | WP_003423055.1 | putative endopeptidase p60 | VF |
| J6L80_RS04970 (J6L80_04970) | 998288..999199 | + | 912 | WP_003423057.1 | conjugal transfer protein | - |
| J6L80_RS04975 (J6L80_04975) | 999320..999697 | + | 378 | WP_003423058.1 | GntR family transcriptional regulator | - |
| J6L80_RS04980 (J6L80_04980) | 999698..1000561 | + | 864 | WP_003423060.1 | ABC transporter ATP-binding protein YtrB | VF |
| J6L80_RS04985 (J6L80_04985) | 1000558..1001202 | + | 645 | WP_003423062.1 | ABC-2 transporter permease | - |
| J6L80_RS04990 (J6L80_04990) | 1001215..1001406 | + | 192 | WP_003423063.1 | hypothetical protein | - |
| J6L80_RS04995 (J6L80_04995) | 1001611..1001799 | + | 189 | WP_009269672.1 | cysteine-rich KTR domain-containing protein | - |
| J6L80_RS05000 (J6L80_05000) | 1001907..1002266 | - | 360 | WP_003423065.1 | helix-turn-helix transcriptional regulator | - |
| J6L80_RS05005 (J6L80_05005) | 1002432..1002647 | + | 216 | WP_002321610.1 | peptide-binding protein | - |
| J6L80_RS05010 (J6L80_05010) | 1002664..1002936 | + | 273 | WP_000301765.1 | antitoxin | Antitoxin Detail |
| J6L80_RS05015 (J6L80_05015) | 1002938..1003096 | + | 159 | WP_003423072.1 | zeta toxin family protein | Toxin Detail |
| J6L80_RS05020 (J6L80_05020) | 1003148..1003504 | + | 357 | Protein_895 | AAA family ATPase | - |
| J6L80_RS05025 (J6L80_05025) | 1003614..1004351 | + | 738 | WP_002292226.1 | rRNA adenine N-6-methyltransferase | ARG |
| J6L80_RS05030 (J6L80_05030) | 1004521..1004781 | + | 261 | Protein_897 | topoisomerase DNA-binding C4 zinc finger domain-containing protein | - |
| J6L80_RS05035 (J6L80_05035) | 1004884..1005762 | + | 879 | WP_003423074.1 | ParA family protein | - |
| J6L80_RS05040 (J6L80_05040) | 1006210..1006626 | + | 417 | WP_003423075.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| J6L80_RS05045 (J6L80_05045) | 1006633..1006881 | + | 249 | WP_002323370.1 | helix-turn-helix domain-containing protein | - |
| J6L80_RS19505 | 1007333..1007533 | + | 201 | WP_021405844.1 | helix-turn-helix domain-containing protein | - |
| J6L80_RS05055 (J6L80_05055) | 1007552..1008997 | + | 1446 | WP_003423078.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| J6L80_RS05065 (J6L80_05065) | 1009364..1010818 | + | 1455 | WP_003427322.1 | family 1 glycosylhydrolase | - |
| J6L80_RS05070 (J6L80_05070) | 1011843..1013051 | + | 1209 | WP_003427320.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|