MGE detailed information
MGE type: Conjugative plasmid MGE length: 93750 bp
Accession: NZ_CP071076 Location: 1..93750 Organism: Escherichia coli strain 3347558 Replicon: plasmid p3347558_3
Accession: NZ_CP071076 Location: 1..93750 Organism: Escherichia coli strain 3347558 Replicon: plasmid p3347558_3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JY392_RS26685 (1) | 1..1032 | + | 1032 | WP_000907863.1 | plasmid replication initiator RepA | - |
| JY392_RS26690 (1728) | 1728..1868 | + | 141 | WP_032072206.1 | hypothetical protein | - |
| JY392_RS26695 (2101) | 2101..2610 | - | 510 | WP_012783913.1 | hypothetical protein | - |
| JY392_RS26700 (2666) | 2666..3268 | - | 603 | WP_001703912.1 | ProQ/FINO family protein | - |
| JY392_RS26705 (3622) | 3622..4122 | + | 501 | Protein_4 | protein YagA | - |
| JY392_RS26710 (4214) | 4214..4918 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| JY392_RS26715 (4974) | 4974..5129 | + | 156 | Protein_6 | IS1380 family transposase | - |
| JY392_RS26720 (5385) | 5385..6260 | + | 876 | WP_000239590.1 | Beta-lactamase CTX-M-1 | ARG |
| JY392_RS26725 (6307) | 6307..6456 | - | 150 | Protein_8 | cupin fold metalloprotein, WbuC family | - |
| JY392_RS26730 (6508) | 6508..7212 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| JY392_RS26735 (7445) | 7445..8305 | + | 861 | WP_000557454.1 | SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| JY392_RS26740 (8318) | 8318..8860 | + | 543 | WP_000587837.1 | AAA family ATPase | - |
| JY392_RS26745 (9342) | 9342..9533 | - | 192 | WP_000951934.1 | hypothetical protein | - |
| JY392_RS26750 (9557) | 9557..9784 | + | 228 | WP_000248278.1 | hypothetical protein | - |
| JY392_RS26755 (9835) | 9835..10971 | + | 1137 | WP_000080861.1 | DUF3883 domain-containing protein | - |
| JY392_RS26760 (11086) | 11086..12456 | + | 1371 | WP_000971921.1 | IS1182 family transposase ISCfr1 | Transposase |
| JY392_RS26765 (13277) | 13277..14137 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| JY392_RS26770 (14284) | 14284..15135 | + | 852 | Protein_17 | protein YagA | - |
| JY392_RS26775 (15642) | 15642..15944 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| JY392_RS26780 (15941) | 15941..16567 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| JY392_RS26785 (16747) | 16747..18018 | - | 1272 | WP_001703910.1 | Y-family DNA polymerase | - |
| JY392_RS26790 (18018) | 18018..18455 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| JY392_RS26795 (18452) | 18452..18700 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| JY392_RS26800 (19118) | 19118..20020 | + | 903 | WP_001739825.1 | DUF1281 domain-containing protein | - |
| JY392_RS28025 (20024) | 20024..20110 | + | 87 | Protein_24 | hypothetical protein | - |
| JY392_RS26805 (20115) | 20115..20450 | - | 336 | WP_001340323.1 | hypothetical protein | - |
| JY392_RS26810 (20788) | 20788..21768 | + | 981 | WP_012783921.1 | plasmid segregation protein ParM | - |
| JY392_RS26815 (21771) | 21771..22193 | + | 423 | WP_000774832.1 | plasmid partitioning/stability family protein | - |
| JY392_RS26820 (22197) | 22197..22508 | + | 312 | WP_033863049.1 | hypothetical protein | - |
| JY392_RS26825 (22584) | 22584..23267 | + | 684 | WP_001732431.1 | DNA methylase | - |
| JY392_RS26830 (23268) | 23268..23489 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| JY392_RS26835 (23419) | 23419..23937 | + | 519 | WP_226434818.1 | DUF1380 family protein | - |
| JY392_RS26840 (23982) | 23982..24752 | + | 771 | WP_031942437.1 | hypothetical protein | - |
| JY392_RS26845 (25164) | 25164..25589 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| JY392_RS26850 (25636) | 25636..26058 | + | 423 | WP_000271744.1 | DUF1380 family protein | - |
| JY392_RS26855 (26055) | 26055..26246 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| JY392_RS26860 (26317) | 26317..26631 | + | 315 | WP_001434357.1 | hypothetical protein | - |
| JY392_RS26865 (27015) | 27015..27542 | + | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| JY392_RS26870 (27600) | 27600..27833 | + | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| JY392_RS26875 (27892) | 27892..29850 | + | 1959 | WP_031942438.1 | ParB/RepB/Spo0J family partition protein | - |
| JY392_RS26880 (29903) | 29903..30337 | + | 435 | WP_001402001.1 | conjugation system SOS inhibitor PsiB | - |
| JY392_RS26885 (30334) | 30334..31053 | + | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| JY392_RS28030 (31050) | 31050..31705 | + | 656 | Protein_42 | hypothetical protein | - |
| JY392_RS26900 (32167) | 32167..32667 | + | 501 | WP_021545156.1 | antirestriction protein ArdA | - |
| JY392_RS26905 (33396) | 33396..33830 | + | 435 | WP_031942440.1 | hypothetical protein | - |
| JY392_RS26910 (33924) | 33924..34190 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| JY392_RS26915 (34367) | 34367..34756 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| JY392_RS26920 (34753) | 34753..35655 | + | 903 | WP_031942441.1 | Recombination-promoting nuclease RpnA | VF |
| JY392_RS26925 (35717) | 35717..35923 | + | 207 | WP_000150314.1 | hypothetical protein | VF |
| JY392_RS26930 (35954) | 35954..36205 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| JY392_RS26935 (36784) | 36784..37632 | + | 849 | WP_031942443.1 | DUF4942 domain-containing protein | - |
| JY392_RS26940 (37718) | 37718..38053 | - | 336 | WP_021532395.1 | hypothetical protein | - |
| JY392_RS26945 (38287) | 38287..38619 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| JY392_RS26950 (38630) | 38630..41329 | + | 2700 | WP_031942444.1 | Protein TraI | Relaxase |
| JY392_RS26955 (41366) | 41366..43657 | - | 2292 | WP_012783931.1 | F-type conjugative transfer protein TrbC | - |
| JY392_RS26960 (43650) | 43650..44720 | - | 1071 | WP_031942445.1 | IncI1-type conjugal transfer protein TrbB | - |
| JY392_RS26965 (44739) | 44739..45947 | - | 1209 | WP_001703845.1 | IncI1-type conjugal transfer protein TrbA | - |
| JY392_RS26970 (46253) | 46253..47032 | - | 780 | WP_275542888.1 | protein FinQ | - |
| - (47547) | 47547..47609 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (47547) | 47547..47609 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (47547) | 47547..47609 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (47547) | 47547..47609 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| JY392_RS26975 (47659) | 47659..47811 | + | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| JY392_RS26980 (47883) | 47883..48134 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| JY392_RS28165 (48635) | 48635..48730 | + | 96 | WP_000609148.1 | DinQ-like type I toxin DqlB | - |
| JY392_RS26990 (48795) | 48795..48971 | - | 177 | WP_001054898.1 | hypothetical protein | - |
| JY392_RS26995 (49154) | 49154..49363 | - | 210 | WP_001140543.1 | hemolysin expression modulator Hha | - |
| JY392_RS27000 (49461) | 49461..50075 | - | 615 | WP_000578648.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| JY392_RS27005 (50151) | 50151..52319 | - | 2169 | WP_031942447.1 | IncI1-type conjugal transfer membrane protein TraY | - |
| JY392_RS27010 (52416) | 52416..53000 | - | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| JY392_RS27015 (53029) | 53029..54231 | - | 1203 | WP_031942448.1 | IncI1-type conjugal transfer protein TraW | - |
| JY392_RS27020 (54198) | 54198..54812 | - | 615 | WP_031942449.1 | IncI1-type conjugal transfer protein TraV | - |
| JY392_RS27025 (54812) | 54812..57856 | - | 3045 | WP_001024789.1 | IncI1-type conjugal transfer protein TraU | - |
| JY392_RS27030 (57946) | 57946..58746 | - | 801 | WP_001164783.1 | IncI1-type conjugal transfer protein TraT | - |
| JY392_RS27035 (58730) | 58730..58918 | - | 189 | WP_001277253.1 | putative conjugal transfer protein TraS | - |
| JY392_RS27040 (58982) | 58982..59386 | - | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| JY392_RS27045 (59437) | 59437..59964 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| JY392_RS27050 (59964) | 59964..60668 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| JY392_RS27055 (60668) | 60668..61957 | - | 1290 | WP_001271994.1 | conjugal transfer protein TraO | - |
| JY392_RS27060 (61960) | 61960..62943 | - | 984 | WP_001191879.1 | hypothetical protein | VF |
| JY392_RS27065 (62954) | 62954..63646 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| JY392_RS27070 (63643) | 63643..63990 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| JY392_RS27075 (64008) | 64008..67772 | - | 3765 | WP_001141540.1 | DUF5710 domain-containing protein | - |
| JY392_RS27080 (67862) | 67862..68413 | - | 552 | WP_052987786.1 | Phospholipase D | VF |
| JY392_RS27085 (68428) | 68428..68718 | - | 291 | WP_001314267.1 | hypothetical protein | - |
| JY392_RS27090 (68715) | 68715..69863 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| JY392_RS27095 (69860) | 69860..70678 | - | 819 | WP_031942450.1 | hypothetical protein | VF |
| JY392_RS27100 (70675) | 70675..71133 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| JY392_RS27105 (71528) | 71528..72112 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| JY392_RS27110 (72172) | 72172..73374 | - | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| JY392_RS27115 (73459) | 73459..74283 | - | 825 | WP_001238939.1 | conjugal transfer protein TraE | - |
| JY392_RS27120 (74434) | 74434..75588 | - | 1155 | WP_001139957.1 | site-specific integrase | - |
| JY392_RS27125 (77109) | 77109..77357 | + | 249 | WP_001349157.1 | hypothetical protein | - |
| JY392_RS27130 (77354) | 77354..78646 | - | 1293 | WP_001417545.1 | hypothetical protein | VF |
| JY392_RS27135 (78646) | 78646..79302 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| JY392_RS27140 (79287) | 79287..79847 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| JY392_RS27145 (79857) | 79857..80471 | - | 615 | WP_000959785.1 | hypothetical protein | VF |
| JY392_RS27150 (80489) | 80489..81586 | - | 1098 | WP_001208805.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| JY392_RS27155 (81599) | 81599..83152 | - | 1554 | WP_000362202.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| JY392_RS27160 (83163) | 83163..83615 | - | 453 | WP_001247336.1 | hypothetical protein | VF |
| JY392_RS27165 (83602) | 83602..84897 | - | 1296 | WP_021560540.1 | hypothetical protein | VF |
| JY392_RS27170 (84890) | 84890..86572 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| JY392_RS27175 (86586) | 86586..87023 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| JY392_RS27180 (87023) | 87023..88090 | - | 1068 | WP_031942452.1 | hypothetical protein | VF |
| JY392_RS27185 (88764) | 88764..89216 | - | 453 | WP_000008894.1 | hypothetical protein | - |
| JY392_RS27190 (89259) | 89259..89513 | - | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| JY392_RS27195 (89675) | 89675..90226 | - | 552 | WP_000744644.1 | hypothetical protein | - |
| JY392_RS27200 (90399) | 90399..91082 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| JY392_RS27205 (91335) | 91335..91868 | - | 534 | WP_001306770.1 | transcription termination/antitermination NusG family protein | - |
| JY392_RS27210 (92310) | 92310..92597 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| JY392_RS27215 (92515) | 92515..92793 | - | 279 | WP_219065241.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|