MGE detailed information
MGE type: Conjugative plasmid MGE length: 104226 bp
Accession: NZ_CP070922 Location: 1..104226 Organism: Escherichia coli strain 40EC Replicon: plasmid p40EC-2
Accession: NZ_CP070922 Location: 1..104226 Organism: Escherichia coli strain 40EC Replicon: plasmid p40EC-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JR909_RS23770 () | 46..1077 | + | 1032 | WP_000907875.1 | replication initiation protein | - |
| JR909_RS23775 () | 1988..2257 | + | 270 | WP_000079942.1 | hypothetical protein | Antitoxin Detail |
| JR909_RS23780 () | 2254..2535 | + | 282 | WP_000969996.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| JR909_RS23785 () | 2581..2793 | + | 213 | Protein_3 | 3'-5' exonuclease | - |
| JR909_RS23790 () | 3052..3981 | - | 930 | WP_000102288.1 | hypothetical protein | - |
| JR909_RS23795 () | 4418..5605 | - | 1188 | WP_001697863.1 | IS91 family transposase ISEc37 | Transposase |
| JR909_RS23800 () | 5605..5970 | - | 366 | WP_000124134.1 | hypothetical protein | - |
| JR909_RS23805 () | 6118..7410 | - | 1293 | Protein_7 | ISL3 family transposase ISEc38 | Transposase |
| JR909_RS23810 () | 7420..7896 | - | 477 | Protein_8 | IS256 family transposase IS1414 | Transposase |
| JR909_RS23815 () | 7953..10634 | - | 2682 | WP_000678689.1 | hypothetical protein | - |
| JR909_RS23820 () | 10791..12755 | - | 1965 | Protein_10 | Tn3 family transposase TnpA_Tn3 | Transposase |
| JR909_RS23825 () | 12769..13101 | + | 333 | WP_001393253.1 | WbuC family cupin fold metalloprotein | - |
| JR909_RS23830 () | 13148..14023 | - | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| JR909_RS23835 () | 14279..15541 | - | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| JR909_RS23840 () | 15732..15935 | - | 204 | Protein_14 | DUF4158 domain-containing protein | - |
| JR909_RS23845 () | 15994..16698 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| JR909_RS23850 () | 16751..17059 | - | 309 | Protein_16 | IS66 family transposase ISCro1 | Transposase |
| JR909_RS23855 () | 17059..17706 | - | 648 | WP_001774680.1 | IS66 family transposase ISCro1 | Transposase |
| JR909_RS23860 () | 17774..18280 | + | 507 | WP_000410600.1 | IS3 family transposase ISBope1 | Transposase |
| JR909_RS23865 () | 18256..19119 | + | 864 | WP_000935776.1 | IS3 family transposase ISEcB1 | Transposase |
| JR909_RS23870 () | 19197..19616 | - | 420 | WP_130526053.1 | hypothetical protein | - |
| JR909_RS23875 () | 19672..20274 | - | 603 | WP_000517689.1 | hypothetical protein | - |
| JR909_RS23880 () | 20628..21974 | + | 1347 | WP_001132019.1 | hypothetical protein | - |
| JR909_RS23885 () | 22253..22669 | + | 417 | Protein_23 | hypothetical protein | - |
| JR909_RS23890 () | 22730..23527 | - | 798 | WP_000544830.1 | IS21 family transposase IS21 | Transposase |
| JR909_RS23895 () | 23527..24699 | - | 1173 | WP_000952373.1 | IS21 family transposase IS21 | Transposase |
| JR909_RS23900 () | 24993..26267 | + | 1275 | WP_024133855.1 | colicin-Ia | - |
| JR909_RS23905 () | 26285..26632 | - | 348 | WP_000762580.1 | hypothetical protein | - |
| JR909_RS23910 () | 26751..27098 | + | 348 | WP_000142424.1 | hypothetical protein | - |
| JR909_RS23915 () | 27116..27706 | - | 591 | WP_000194555.1 | hypothetical protein | - |
| JR909_RS23920 () | 27703..27963 | - | 261 | WP_000343102.1 | hypothetical protein | - |
| JR909_RS23925 () | 28532..28945 | + | 414 | WP_000465034.1 | hypothetical protein | - |
| JR909_RS23930 () | 28947..29732 | + | 786 | WP_001164192.1 | site-specific integrase | - |
| JR909_RS23935 () | 30316..30948 | + | 633 | WP_000312331.1 | ParA family protein | - |
| JR909_RS23940 () | 30948..31322 | + | 375 | WP_000752652.1 | hypothetical protein | - |
| JR909_RS23945 () | 31561..32535 | + | 975 | WP_001217836.1 | hypothetical protein | - |
| JR909_RS23950 () | 32539..32931 | + | 393 | WP_000272884.1 | plasmid partitioning/stability family protein | - |
| JR909_RS23955 () | 33612..34514 | + | 903 | WP_001348079.1 | DUF1281 domain-containing protein | - |
| JR909_RS23960 () | 34511..34823 | + | 313 | Protein_38 | hypothetical protein | - |
| JR909_RS23965 () | 34899..35582 | + | 684 | WP_000086147.1 | DNA methylase | - |
| JR909_RS23970 () | 35583..35804 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| JR909_RS23975 () | 35818..36252 | + | 435 | WP_000274500.1 | DUF1380 family protein | - |
| JR909_RS23980 () | 36298..37074 | + | 777 | WP_001005043.1 | hypothetical protein | - |
| JR909_RS23985 () | 37615..37917 | + | 303 | WP_014653258.1 | antirestriction protein | - |
| JR909_RS23990 () | 37964..38386 | + | 423 | WP_000271705.1 | DUF1380 family protein | - |
| JR909_RS23995 () | 38383..38574 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| JR909_RS24000 () | 38645..38959 | + | 315 | WP_001434357.1 | hypothetical protein | - |
| JR909_RS24005 () | 39343..39870 | + | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| JR909_RS24010 () | 39928..40161 | + | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| JR909_RS24015 () | 40220..42178 | + | 1959 | WP_001145485.1 | ParB/RepB/Spo0J family partition protein | - |
| JR909_RS24020 () | 42233..42667 | + | 435 | WP_001387500.1 | conjugation system SOS inhibitor PsiB | - |
| JR909_RS24025 () | 42664..43383 | + | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| JR909_RS24030 () | 43380..43976 | + | 597 | WP_000977997.1 | hypothetical protein | - |
| JR909_RS24035 () | 44438..44938 | + | 501 | WP_000117611.1 | antirestriction protein ArdA | - |
| JR909_RS24040 () | 45667..46101 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| JR909_RS24045 () | 46195..46461 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| JR909_RS24050 () | 46526..47464 | + | 939 | WP_000078704.1 | Recombination-promoting nuclease RpnA | VF |
| JR909_RS24055 () | 47487..47684 | + | 198 | WP_001348086.1 | hypothetical protein | - |
| JR909_RS24060 () | 47715..47966 | - | 252 | WP_000148285.1 | helix-turn-helix domain-containing protein | - |
| JR909_RS24065 () | 48000..48197 | - | 198 | WP_001161115.1 | hypothetical protein | - |
| JR909_RS24070 () | 48546..49394 | + | 849 | WP_001077023.1 | DUF4942 domain-containing protein | - |
| JR909_RS24075 () | 49480..49815 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| JR909_RS24080 () | 50048..50380 | + | 333 | WP_001281051.1 | hypothetical protein | - |
| JR909_RS24085 () | 50391..53090 | + | 2700 | WP_001354015.1 | Protein TraI | Relaxase |
| JR909_RS24090 () | 53127..55418 | - | 2292 | WP_001289276.1 | hypothetical protein | - |
| JR909_RS24095 () | 55411..56481 | - | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| JR909_RS24100 () | 56500..57708 | - | 1209 | WP_000121274.1 | IncI1-type conjugal transfer protein TrbA | - |
| - () | 57888..57945 | - | 58 | NuclAT_0 | - | - |
| - () | 57888..57945 | - | 58 | NuclAT_0 | - | - |
| - () | 57888..57945 | - | 58 | NuclAT_0 | - | - |
| - () | 57888..57945 | - | 58 | NuclAT_0 | - | - |
| JR909_RS24105 () | 58000..58152 | + | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| JR909_RS24110 () | 58775..59071 | + | 297 | WP_001275298.1 | hypothetical protein | - |
| JR909_RS24115 () | 59136..59312 | - | 177 | WP_001054904.1 | hypothetical protein | - |
| JR909_RS24120 () | 59704..59913 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| JR909_RS24125 () | 59985..60647 | - | 663 | WP_205899293.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| JR909_RS24130 () | 60712..62874 | - | 2163 | WP_000698351.1 | DotA/TraY family protein | - |
| JR909_RS24135 () | 62971..63555 | - | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| JR909_RS24140 () | 63584..64786 | - | 1203 | WP_001189160.1 | IncI1-type conjugal transfer protein TraW | - |
| JR909_RS24145 () | 64753..65367 | - | 615 | WP_205899294.1 | IncI1-type conjugal transfer protein TraV | - |
| JR909_RS24150 () | 65367..68411 | - | 3045 | WP_001024780.1 | IncI1-type conjugal transfer protein TraU | - |
| JR909_RS24155 () | 68501..69301 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| JR909_RS24160 () | 69285..69473 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| JR909_RS24165 () | 69537..69941 | - | 405 | WP_000086957.1 | IncI1-type conjugal transfer protein TraR | - |
| JR909_RS24170 () | 69992..70519 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| JR909_RS24175 () | 70519..71223 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| JR909_RS24180 () | 71223..72512 | - | 1290 | WP_001272005.1 | conjugal transfer protein TraO | - |
| JR909_RS24185 () | 72515..73498 | - | 984 | WP_001191877.1 | hypothetical protein | VF |
| JR909_RS24190 () | 73509..74201 | - | 693 | WP_000138548.1 | DotI/IcmL family type IV secretion protein | - |
| JR909_RS24195 () | 74198..74545 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| JR909_RS24200 () | 74563..78330 | - | 3768 | WP_001141529.1 | DNA primase | - |
| JR909_RS24205 () | 78420..78971 | - | 552 | WP_000014583.1 | Phospholipase D | VF |
| JR909_RS24210 () | 78986..79276 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| JR909_RS24215 () | 79273..80421 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| JR909_RS24220 () | 80418..81236 | - | 819 | WP_000646098.1 | hypothetical protein | VF |
| JR909_RS24225 () | 81233..81691 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| JR909_RS24230 () | 82086..82670 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| JR909_RS24235 () | 82730..83932 | - | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| JR909_RS24240 () | 84017..84841 | - | 825 | WP_001238939.1 | hypothetical protein | - |
| JR909_RS24245 () | 84992..86146 | - | 1155 | WP_001139957.1 | integrase | - |
| JR909_RS24250 () | 87529..87783 | + | 255 | WP_171904539.1 | prepilin | - |
| JR909_RS24255 () | 87780..89204 | - | 1425 | WP_001389385.1 | hypothetical protein | VF |
| JR909_RS24260 () | 89204..89860 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| JR909_RS24265 () | 89845..90405 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| JR909_RS24270 () | 90415..91029 | - | 615 | WP_000959785.1 | hypothetical protein | VF |
| JR909_RS24275 () | 91047..92144 | - | 1098 | WP_001208805.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| JR909_RS24280 () | 92157..93710 | - | 1554 | WP_000362202.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| JR909_RS24285 () | 93721..94173 | - | 453 | WP_001247336.1 | hypothetical protein | VF |
| JR909_RS24290 () | 94160..95455 | - | 1296 | WP_000752774.1 | type 4b pilus protein PilO2 | - |
| JR909_RS24295 () | 95448..97130 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| JR909_RS24300 () | 97144..97581 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| JR909_RS24305 () | 97581..98648 | - | 1068 | WP_000742600.1 | hypothetical protein | VF |
| JR909_RS24310 () | 99322..99774 | - | 453 | WP_000008893.1 | hypothetical protein | - |
| JR909_RS24315 () | 99817..100071 | - | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| JR909_RS24320 () | 100339..100905 | - | 567 | WP_000776428.1 | hypothetical protein | - |
| JR909_RS24325 () | 100919..101602 | - | 684 | WP_000213857.1 | conjugal transfer protein TraC | - |
| JR909_RS24330 () | 101856..102389 | - | 534 | WP_001303319.1 | transcription termination factor NusG | - |
| JR909_RS24335 () | 102831..103118 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| JR909_RS24340 () | 103036..103299 | - | 264 | WP_001324596.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|