MGE detailed information
MGE type: Prophage MGE length: 87961 bp
Accession: NZ_CP069624 Location: 382045..470005 Organism: Escherichia coli strain PBP8 Replicon: chromosome
Accession: NZ_CP069624 Location: 382045..470005 Organism: Escherichia coli strain PBP8 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JSQ93_RS01870 () | 377901..378701 | + | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| JSQ93_RS01875 () | 378714..379565 | + | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| JSQ93_RS01880 () | 379620..380078 | + | 459 | WP_000156255.1 | DUF986 family protein | - |
| JSQ93_RS01885 () | 380507..381073 | + | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| JSQ93_RS01890 () | 381070..381879 | - | 810 | WP_000010139.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| JSQ93_RS01895 () | 382045..382254 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| JSQ93_RS01900 () | 382267..382410 | - | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| JSQ93_RS01905 () | 383080..383367 | - | 288 | WP_001006866.1 | YebO family protein | - |
| JSQ93_RS01910 () | 383442..383585 | - | 144 | WP_000714544.1 | PhoP/PhoQ regulator MgrB | - |
| JSQ93_RS01915 () | 383744..383983 | + | 240 | WP_001211011.1 | YobH family protein | - |
| JSQ93_RS01920 () | 384127..384918 | - | 792 | WP_001262188.1 | DNA-binding transcriptional regulator KdgR | - |
| JSQ93_RS01925 () | 385095..386468 | + | 1374 | WP_001296135.1 | MFS transporter | - |
| JSQ93_RS01930 () | 386514..387395 | - | 882 | WP_000984517.1 | protease HtpX | - |
| JSQ93_RS01935 () | 387587..389635 | - | 2049 | WP_001055794.1 | carboxy terminal-processing peptidase | - |
| JSQ93_RS01940 () | 389655..390353 | - | 699 | WP_000431376.1 | RNA chaperone ProQ | - |
| JSQ93_RS01945 () | 390450..390947 | - | 498 | WP_001029106.1 | L-methionine (R)-S-oxide reductase | - |
| JSQ93_RS01950 () | 391077..392360 | + | 1284 | WP_001304298.1 | membrane integrity lipid transport subunit YebS | - |
| JSQ93_RS01955 () | 392329..394962 | + | 2634 | WP_001327806.1 | hypothetical protein | VF |
| JSQ93_RS01960 () | 395042..396481 | + | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JSQ93_RS01965 () | 396599..396835 | + | 237 | WP_001295499.1 | YebV family protein | - |
| JSQ93_RS01970 () | 396940..397131 | + | 192 | WP_001317886.1 | YebW family protein | - |
| JSQ93_RS01975 () | 397132..397788 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 397885..398153 | + | 269 | - | - | Antitoxin Detail |
| - | 397923..398025 | - | 103 | - | - | Toxin Detail |
| JSQ93_RS01980 () | 398183..398524 | - | 342 | WP_000984819.1 | YebY family protein | - |
| JSQ93_RS01985 () | 398537..399409 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| JSQ93_RS01990 () | 399413..399787 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JSQ93_RS01995 () | 399926..400156 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JSQ93_RS02000 () | 400259..400915 | + | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JSQ93_RS02005 () | 400939..401601 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JSQ93_RS02010 () | 401598..403658 | - | 2061 | Protein_399 | oligopeptidase B | - |
| JSQ93_RS02015 () | 403867..404526 | - | 660 | WP_000024725.1 | tellurite resistance TerB family protein | - |
| JSQ93_RS02020 () | 404853..405209 | - | 357 | WP_001295500.1 | protein YebF | - |
| JSQ93_RS02025 () | 405276..405566 | - | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| JSQ93_RS02030 () | 405700..406878 | + | 1179 | WP_000173466.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| JSQ93_RS02035 () | 406934..407575 | - | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| JSQ93_RS02040 () | 407612..409423 | - | 1812 | WP_001069461.1 | phosphogluconate dehydratase | - |
| JSQ93_RS02045 () | 409658..411133 | - | 1476 | WP_000301727.1 | glucose-6-phosphate dehydrogenase | - |
| JSQ93_RS02050 () | 411471..412340 | + | 870 | WP_001056695.1 | DNA-binding transcriptional regulator HexR | - |
| JSQ93_RS02055 () | 412468..413910 | + | 1443 | WP_000091149.1 | pyruvate kinase | - |
| JSQ93_RS02060 () | 414042..415013 | - | 972 | WP_001304294.1 | hypothetical protein | VF |
| JSQ93_RS02065 () | 415132..416454 | - | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| JSQ93_RS02070 () | 416470..417402 | - | 933 | WP_011076428.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| JSQ93_RS02075 () | 417481..418236 | + | 756 | WP_000202996.1 | hypothetical protein | VF |
| JSQ93_RS02080 () | 418233..419018 | + | 786 | WP_000571478.1 | hypothetical protein | VF |
| JSQ93_RS02085 () | 419165..420175 | - | 1011 | WP_000568522.1 | Holliday junction branch migration DNA helicase RuvB | - |
| JSQ93_RS02090 () | 420184..420795 | - | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| JSQ93_RS02095 () | 420934..420999 | - | 66 | WP_072123646.1 | stress response small protein YobI | - |
| JSQ93_RS02100 () | 421071..421673 | + | 603 | WP_001024947.1 | YebB family permuted papain-like enzyme | - |
| JSQ93_RS02105 () | 421675..422196 | - | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| JSQ93_RS02110 () | 422231..422971 | - | 741 | WP_000907234.1 | hypothetical protein | VF |
| JSQ93_RS02115 () | 423000..423452 | - | 453 | WP_077393227.1 | dihydroneopterin triphosphate diphosphatase | - |
| JSQ93_RS02120 () | 423445..425217 | - | 1773 | WP_001258675.1 | aspartate--tRNA ligase | - |
| JSQ93_RS02125 () | 425527..426093 | + | 567 | WP_000891621.1 | hydrolase | - |
| JSQ93_RS02130 () | 426090..426185 | + | 96 | Protein_423 | hypothetical protein | - |
| JSQ93_RS02135 () | 426695..427084 | - | 390 | WP_024199385.1 | S24 family peptidase | - |
| JSQ93_RS02140 () | 427163..427405 | + | 243 | WP_000497431.1 | DinI-like family protein | - |
| JSQ93_RS02145 () | 427531..427821 | + | 291 | WP_157221658.1 | hypothetical protein | - |
| JSQ93_RS02150 () | 427823..428266 | + | 444 | WP_001704105.1 | tail fiber assembly protein | - |
| JSQ93_RS02155 () | 428238..428831 | - | 594 | WP_001704106.1 | tail assembly chaperone | - |
| JSQ93_RS02160 () | 428831..429763 | - | 933 | WP_001704107.1 | hypothetical protein | - |
| JSQ93_RS02165 () | 430269..430502 | + | 234 | WP_021567253.1 | hypothetical protein | - |
| JSQ93_RS02170 () | 430534..434460 | - | 3927 | WP_001704108.1 | DUF1983 domain-containing protein | - |
| JSQ93_RS02175 () | 434503..435120 | - | 618 | WP_001704109.1 | tail assembly protein | - |
| JSQ93_RS02180 () | 435113..435832 | - | 720 | WP_001704110.1 | C40 family peptidase | - |
| JSQ93_RS02185 () | 435835..436572 | - | 738 | WP_001704111.1 | phage minor tail protein L | - |
| JSQ93_RS02190 () | 436629..436967 | - | 339 | WP_001704112.1 | phage tail protein | - |
| JSQ93_RS02195 () | 436964..440101 | - | 3138 | WP_001704113.1 | phage tail tape measure protein | - |
| JSQ93_RS02200 () | 440085..440357 | - | 273 | WP_001704114.1 | phage tail assembly protein T | - |
| JSQ93_RS02205 () | 440408..440839 | - | 432 | WP_001704115.1 | phage minor tail protein G | - |
| JSQ93_RS02210 () | 440850..441593 | - | 744 | WP_001704116.1 | phage tail protein | - |
| JSQ93_RS02215 () | 441603..442004 | - | 402 | WP_001704117.1 | phage minor tail U family protein | - |
| JSQ93_RS02220 () | 442001..442579 | - | 579 | WP_001704118.1 | phage tail protein | - |
| JSQ93_RS02225 () | 442589..442831 | - | 243 | WP_001704119.1 | hypothetical protein | - |
| JSQ93_RS02230 () | 442857..443183 | - | 327 | WP_001704120.1 | DUF2190 family protein | - |
| JSQ93_RS02235 () | 443266..445281 | - | 2016 | WP_158414457.1 | hypothetical protein | VF |
| JSQ93_RS02240 () | 445226..446755 | - | 1530 | Protein_445 | phage portal protein | - |
| JSQ93_RS02245 () | 446722..446937 | - | 216 | WP_001704123.1 | hypothetical protein | - |
| JSQ93_RS02250 () | 446934..449036 | - | 2103 | WP_001704124.1 | phage terminase large subunit family protein | - |
| JSQ93_RS02255 () | 449036..449524 | - | 489 | WP_001704125.1 | DUF1441 family protein | - |
| JSQ93_RS02260 () | 449708..450436 | - | 729 | WP_000066210.1 | hypothetical protein | - |
| JSQ93_RS02265 () | 450611..450802 | - | 192 | WP_001165416.1 | hypothetical protein | - |
| JSQ93_RS02270 () | 450822..451436 | + | 615 | WP_000993911.1 | hypothetical protein | - |
| JSQ93_RS02275 () | 451505..451702 | - | 198 | WP_001704127.1 | hypothetical protein | - |
| JSQ93_RS02280 () | 451916..452437 | - | 522 | WP_050557522.1 | DUF2514 domain-containing protein | - |
| JSQ93_RS02285 () | 452416..452958 | - | 543 | WP_032315006.1 | lysozyme | - |
| JSQ93_RS02290 () | 452936..453214 | - | 279 | WP_024199389.1 | phage holin | - |
| JSQ93_RS02295 () | 453360..454412 | - | 1053 | WP_001704131.1 | site-specific DNA-methyltransferase | - |
| JSQ93_RS02300 () | 454563..454754 | - | 192 | WP_024199390.1 | hypothetical protein | - |
| JSQ93_RS02305 () | 454923..455792 | - | 870 | WP_223938292.1 | S49 family peptidase | - |
| JSQ93_RS02310 () | 455835..456041 | - | 207 | WP_001704134.1 | hypothetical protein | - |
| JSQ93_RS02315 () | 456474..457163 | - | 690 | WP_001704136.1 | bacteriophage antitermination protein Q | - |
| JSQ93_RS02320 () | 457185..458180 | - | 996 | WP_024199391.1 | DUF968 domain-containing protein | - |
| JSQ93_RS02325 () | 458177..458860 | - | 684 | WP_001704138.1 | phage regulatory protein/antirepressor Ant | - |
| JSQ93_RS02330 () | 458874..459260 | - | 387 | WP_001704139.1 | RusA family crossover junction endodeoxyribonuclease | - |
| JSQ93_RS02335 () | 459257..460576 | - | 1320 | WP_001704140.1 | phage N-6-adenine-methyltransferase | - |
| JSQ93_RS02340 () | 460573..461454 | - | 882 | WP_001704141.1 | conserved phage C-terminal domain-containing protein | - |
| JSQ93_RS02345 () | 461444..461623 | - | 180 | WP_071840634.1 | DUF4222 domain-containing protein | - |
| JSQ93_RS02350 () | 461799..462362 | - | 564 | WP_001704142.1 | YmfL family putative regulatory protein | - |
| JSQ93_RS02355 () | 462394..462651 | - | 258 | WP_024195799.1 | YdaS family helix-turn-helix protein | - |
| JSQ93_RS02360 () | 462721..463440 | + | 720 | WP_032140310.1 | XRE family transcriptional regulator | - |
| JSQ93_RS02365 () | 463685..464050 | + | 366 | WP_016240143.1 | ClpX C4-type zinc finger protein | - |
| JSQ93_RS02370 () | 464393..465310 | + | 918 | WP_001704144.1 | recombination-associated protein RdgC | - |
| JSQ93_RS02375 () | 465419..465958 | + | 540 | WP_000120456.1 | hypothetical protein | - |
| JSQ93_RS02380 () | 465946..466122 | + | 177 | WP_001253785.1 | hypothetical protein | - |
| JSQ93_RS02385 () | 466119..466373 | + | 255 | WP_000215602.1 | hypothetical protein | - |
| JSQ93_RS02390 () | 466370..466717 | + | 348 | WP_000126106.1 | hypothetical protein | - |
| JSQ93_RS02395 () | 466719..467027 | + | 309 | WP_000359354.1 | hypothetical protein | - |
| JSQ93_RS02400 () | 467218..467487 | + | 270 | Protein_477 | DUF550 domain-containing protein | - |
| JSQ93_RS02405 () | 467511..467765 | + | 255 | WP_000492059.1 | DUF4222 domain-containing protein | - |
| JSQ93_RS02410 () | 467787..468356 | + | 570 | WP_001704145.1 | 3'-5' exonuclease | - |
| JSQ93_RS02415 () | 468397..468633 | + | 237 | WP_003839185.1 | excisionase family protein | - |
| JSQ93_RS02420 () | 468692..470005 | + | 1314 | WP_001704146.1 | hypothetical protein ; Integrase | Integrase |
| JSQ93_RS02425 () | 469984..470757 | + | 774 | WP_050557523.1 | DUF72 domain-containing protein | - |
| JSQ93_RS02430 () | 470810..471205 | + | 396 | WP_000252980.1 | MAPEG family protein | - |
| JSQ93_RS02435 () | 471246..471989 | + | 744 | WP_000019588.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| JSQ93_RS02440 () | 471986..472957 | + | 972 | WP_000564738.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli Nissle 1917 | Prophage | TA47033 | NZ_CP007799 | 2004207..2079177 | 0.004 |