MGE detailed information

MGE type: Prophage        MGE length: 161864 bp
Accession: NZ_CP066809        Location: 1846404..2008267         Organism: Shigella flexneri 3a strain 888048       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JGY96_RS09145 () 1842152..1843810 - 1659 Protein_1784 flagellar M-ring protein FliF -
JGY96_RS09150 () 1844024..1844338 + 315 WP_001274298.1 flagellar hook-basal body complex protein FliE -
JGY96_RS09155 () 1844683..1845015 + 333 WP_001070440.1 SMR family multidrug efflux protein EmrE -
JGY96_RS09160 () 1845184..1845735 + 552 WP_001313946.1 Raf kinase inhibitor-like protein YbcL -
JGY96_RS09165 () 1845745..1846347 + 603 Protein_1788 AraC family transcriptional regulator -
JGY96_RS09170 () 1846404..1847100 + 697 WP_254100650.1 IS1 family transposase IS1X2 Transposase
JGY96_RS09175 () 1847117..1847317 + 201 Protein_1790 helix-turn-helix domain-containing protein -
JGY96_RS09180 () 1847533..1847631 + 99 Protein_1791 antitermination protein -
JGY96_RS09185 () 1847806..1848888 - 1083 WP_000737286.1 porin OmpD -
JGY96_RS09190 () 1849465..1849891 - 427 Protein_1793 IS200-IS605 family transposase IS609 Transposase
JGY96_RS09195 () 1849899..1851107 + 1209 Protein_1794 IS200-IS605 family transposase IS609 Transposase
JGY96_RS09200 () 1851147..1851817 - 671 Protein_1795 SOS response-associated peptidase -
JGY96_RS09205 () 1851924..1852157 - 234 WP_000790504.1 sulfurtransferase-like selenium metabolism protein YedF -
JGY96_RS09210 () 1852154..1853359 - 1206 WP_000118897.1 selenium metabolism membrane protein YedE/FdhT -
JGY96_RS09215 () 1853546..1853959 + 414 WP_001392280.1 lipoprotein YedD -
JGY96_RS09220 () 1853993..1855480 - 1488 WP_001245691.1 alpha-amylase -
JGY96_RS09225 () 1855558..1855923 - 366 WP_001057836.1 hypothetical protein VF
JGY96_RS09230 () 1855923..1856333 - 411 WP_000270672.1 hypothetical protein VF
JGY96_RS09235 () 1856358..1857764 - 1407 WP_000146784.1 hypothetical protein VF
JGY96_RS09240 () 1858030..1859682 + 1653 WP_025759942.1 hypothetical protein VF
JGY96_RS09245 () 1859847..1860566 + 720 WP_025759941.1 hypothetical protein VF
JGY96_RS09250 () 1860612..1861163 + 552 WP_005048734.1 hypothetical protein VF
JGY96_RS09255 () 1861251..1862051 + 801 WP_005069139.1 hypothetical protein VF
JGY96_RS09260 () 1862156..1863142 + 987 WP_001128248.1 D-cysteine desulfhydrase -
JGY96_RS09265 () 1863157..1863825 + 669 WP_001158220.1 cystine ABC transporter permease -
JGY96_RS09270 () 1863822..1864574 + 753 WP_001272995.1 hypothetical protein VF
JGY96_RS09275 () 1864804..1865424 + 621 Protein_1810 hypothetical protein VF
JGY96_RS09280 () 1865457..1865681 - 225 WP_000106474.1 DUF2594 family protein YecF -
JGY96_RS09285 () 1865668..1865844 - 177 WP_000590347.1 protein YecU -
JGY96_RS09290 () 1866140..1866796 + 657 WP_000611335.1 hypothetical protein VF
JGY96_RS09295 () 1866793..1868625 + 1833 WP_001283406.1 excinuclease ABC subunit UvrC -
JGY96_RS09300 () 1868682..1869230 + 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
JGY96_RS09315 () 1869880..1870545 + 666 WP_000847902.1 UPF0149 family protein YecA -
JGY96_RS09320 () 1870607..1871818 - 1212 WP_025759935.1 tyrosine transporter TyrP -
JGY96_RS09325 () 1872008..1872247 + 240 WP_000377224.1 YecH family protein -
JGY96_RS09330 () 1872284..1872781 - 498 WP_000917208.1 non-heme ferritin -
JGY96_RS09335 () 1872952..1873275 - 324 WP_001237866.1 YecR-like lipofamily protein -
JGY96_RS09340 () 1873538..1873624 + 87 WP_010723106.1 stress response protein AzuC -
JGY96_RS09345 () 1873739..1873990 + 252 WP_000082120.1 DUF2766 family protein YecJ -
JGY96_RS09350 () 1874070..1874573 - 504 WP_000179469.1 non-heme ferritin-like protein -
JGY96_RS09355 () 1875370..1876359 + 990 WP_025759934.1 arabinose ABC transporter substrate-binding protein AraF -
JGY96_RS09360 () 1876429..1876542 + 114 Protein_1825 lantibiotic ABC transporter ATP-binding protein -
JGY96_RS09365 () 1876598..1877294 + 697 WP_254100650.1 IS1 family transposase IS1X2 Transposase
JGY96_RS09370 () 1877310..1877600 - 291 Protein_1827 lysozyme inhibitor LprI family protein -
JGY96_RS09375 () 1877691..1877735 + 45 WP_212734366.1 hypothetical protein -
JGY96_RS09380 () 1877777..1879510 - 1734 WP_025758825.1 arginine--tRNA ligase -
JGY96_RS09385 () 1879726..1880292 + 567 WP_005048653.1 VOC family protein -
JGY96_RS09390 () 1880306..1881052 + 747 WP_001185715.1 copper homeostasis protein CutC -
JGY96_RS09395 () 1881440..1882540 + 1101 WP_001214307.1 NapC/NirT family cytochrome c -
JGY96_RS09400 () 1882565..1884994 + 2430 WP_119182133.1 trimethylamine N-oxide reductase TorZ -
JGY96_RS09405 () 1885159..1886130 - 972 WP_000564755.1 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB -
JGY96_RS09410 () 1886127..1886870 - 744 WP_025758823.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
JGY96_RS09415 () 1886911..1887306 - 396 WP_000252980.1 MAPEG family protein -
JGY96_RS09420 () 1887359..1888129 - 771 WP_050544124.1 DUF72 domain-containing protein -
JGY96_RS09425 () 1888111..1889413 - 1303 Protein_1838 hypothetical protein ; Integrase Integrase
JGY96_RS09430 () 1889537..1890692 + 1156 Protein_1839 IS3 family transposase ISSd1 Transposase
JGY96_RS09435 () 1890736..1890837 + 102 Protein_1840 hypothetical protein -
JGY96_RS09440 () 1890834..1891523 + 690 WP_040234742.1 bacteriophage antitermination protein Q -
JGY96_RS09465 () 1892709..1893905 - 1197 WP_000140459.1 IS110 family transposase ISEc20 Transposase
JGY96_RS09470 () 1894169..1894570 + 402 WP_001074424.1 DNA-packaging protein FI -
JGY96_RS09475 () 1894582..1894953 + 372 WP_000753026.1 head-tail joining protein -
JGY96_RS09480 () 1894940..1895530 + 591 WP_000677116.1 phage tail protein -
JGY96_RS09485 () 1895527..1895926 + 400 Protein_1846 phage minor tail U family protein -
JGY96_RS09490 () 1895937..1896677 + 741 WP_005067061.1 phage tail tube protein -
JGY96_RS09495 () 1896736..1897122 + 387 WP_000478925.1 phage minor tail protein G -
JGY96_RS09500 () 1897131..1897460 + 330 WP_001161002.1 phage tail assembly protein T -
JGY96_RS09505 () 1897432..1900473 + 3042 Protein_1850 phage tail tape measure protein -
JGY96_RS09510 () 1900473..1900802 + 330 WP_000447263.1 phage tail protein -
JGY96_RS09515 () 1900802..1901500 + 699 WP_025758205.1 phage minor tail protein L -
JGY96_RS09520 () 1901505..1902248 + 744 WP_000194737.1 C40 family peptidase -
JGY96_RS09525 () 1902245..1902786 + 542 Protein_1854 tail assembly protein -
JGY96_RS09530 () 1902847..1906325 + 3479 Protein_1855 host specificity protein J -
JGY96_RS09535 () 1906393..1906992 + 600 WP_001233104.1 hypothetical protein VF
JGY96_RS09540 () 1907056..1908468 + 1413 Protein_1857 prophage tail fiber N-terminal domain-containing protein -
JGY96_RS09545 () 1908419..1909041 + 623 Protein_1858 DUF4376 domain-containing protein -
JGY96_RS09550 () 1909219..1910970 - 1752 WP_005140132.1 hypothetical protein VF
JGY96_RS09555 () 1911571..1911819 - 249 WP_001217553.1 DinI-like family protein -
JGY96_RS09560 () 1911916..1912092 + 177 WP_000530007.1 hypothetical protein -
JGY96_RS09565 () 1912082..1912177 - 96 Protein_1862 hypothetical protein -
JGY96_RS09570 () 1912174..1912521 - 348 Protein_1863 hydrolase -
JGY96_RS09575 () 1912548..1913745 - 1198 Protein_1864 IS110 family transposase ISSfl4 Transposase
JGY96_RS09580 () 1913972..1914190 - 219 Protein_1865 isochorismatase family protein -
JGY96_RS09585 () 1914500..1916272 + 1773 WP_050900069.1 aspartate--tRNA ligase -
JGY96_RS09590 () 1916390..1916842 + 453 WP_001300367.1 dihydroneopterin triphosphate diphosphatase -
JGY96_RS09595 () 1916871..1917611 + 741 WP_000907248.1 hypothetical protein VF
JGY96_RS09600 () 1917646..1918167 + 522 WP_005068993.1 crossover junction endodeoxyribonuclease RuvC -
JGY96_RS09605 () 1918169..1918417 - 249 Protein_1870 hypothetical protein -
JGY96_RS09610 () 1918502..1919175 + 674 Protein_1871 IS66 family transposase ISSfl3 Transposase
JGY96_RS09615 () 1919172..1919519 + 348 WP_000631709.1 IS66 family transposase ISSfl3 Transposase
JGY96_RS09620 () 1919539..1921137 + 1599 Protein_1873 IS66 family transposase ISSfl3 Transposase
JGY96_RS09625 () 1921170..1921346 - 177 Protein_1874 hypothetical protein -
JGY96_RS09630 () 1921363..1922059 - 697 Protein_1875 IS1 family transposase IS1X2 Transposase
JGY96_RS09635 () 1922114..1922305 - 192 Protein_1876 hypothetical protein -
JGY96_RS09640 () 1922376..1922441 + 66 WP_001386853.1 stress response small protein YobI -
JGY96_RS09645 () 1922580..1923191 + 612 WP_000580323.1 Holliday junction branch migration protein RuvA -
JGY96_RS09650 () 1923200..1924210 + 1011 WP_000568525.1 Holliday junction branch migration DNA helicase RuvB -
JGY96_RS09655 () 1924357..1925142 - 786 WP_000571470.1 hypothetical protein VF
JGY96_RS09660 () 1925139..1925894 - 756 WP_000202992.1 hypothetical protein VF
JGY96_RS09665 () 1925973..1926905 + 933 WP_001342995.1 zinc ABC transporter substrate-binding protein ZnuA -
JGY96_RS09670 () 1926921..1928243 + 1323 WP_001184045.1 murein DD-endopeptidase MepM -
JGY96_RS09675 () 1928363..1929334 + 972 WP_000448385.1 hypothetical protein VF
JGY96_RS09680 () 1929465..1930907 - 1443 WP_000044414.1 pyruvate kinase -
JGY96_RS09685 () 1931035..1931904 - 870 WP_001056694.1 DNA-binding transcriptional regulator HexR -
JGY96_RS09690 () 1932243..1933718 + 1476 WP_000301720.1 glucose-6-phosphate dehydrogenase -
JGY96_RS09695 () 1933953..1935764 + 1812 WP_001069457.1 phosphogluconate dehydratase -
JGY96_RS09700 () 1935801..1936442 + 642 WP_152030404.1 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase -
JGY96_RS09705 () 1936497..1937675 - 1179 WP_000173488.1 formate-dependent phosphoribosylglycinamide formyltransferase -
JGY96_RS09710 () 1937809..1938099 + 291 Protein_1891 DNA damage-inducible protein YebG -
JGY96_RS09715 () 1938166..1938522 + 357 WP_005068964.1 protein YebF -
JGY96_RS09720 () 1938849..1939508 + 660 WP_000024749.1 tellurite resistance TerB family protein -
JGY96_RS09725 () 1939717..1941777 + 2061 WP_025758144.1 oligopeptidase B -
JGY96_RS09730 () 1941774..1942436 - 663 WP_000944269.1 exodeoxyribonuclease X -
JGY96_RS09735 () 1942460..1943116 - 657 WP_000011667.1 carbon-nitrogen hydrolase family protein YobB -
JGY96_RS09740 () 1943218..1943448 - 231 WP_000916763.1 DNA polymerase III subunit theta -
JGY96_RS09745 () 1943587..1943961 + 375 WP_025758141.1 CopC domain-containing protein YobA -
JGY96_RS09750 () 1943965..1944837 + 873 Protein_1899 copper homeostasis membrane protein CopD -
JGY96_RS09755 () 1944850..1945191 + 342 WP_000976476.1 YebY family protein -
- 1945219..1945453 - 235 - - Antitoxin Detail
- 1945349..1945452 + 104 - - Toxin Detail
JGY96_RS09760 () 1945584..1946660 - 1077 WP_025758140.1 hypothetical protein ; Integrase Integrase
JGY96_RS09765 () 1946626..1946907 - 282 WP_005127484.1 excisionase -
JGY96_RS09770 () 1947024..1948173 - 1150 Protein_1903 IS3 family transposase ISSd1 Transposase
JGY96_RS09775 () 1948243..1948623 + 381 Protein_1904 IS66 family transposase ISSfl3 Transposase
JGY96_RS09780 () 1948625..1948792 + 168 Protein_1905 IS66 family transposase ISSfl3 Transposase
JGY96_RS09785 () 1948743..1949364 + 622 Protein_1906 IS66 family transposase ISSfl3 Transposase
JGY96_RS09790 () 1949543..1951249 - 1707 WP_000936820.1 hypothetical protein VF
JGY96_RS09795 () 1952000..1952485 + 486 Protein_1908 metallophosphoesterase -
JGY96_RS09800 () 1952530..1953685 - 1156 Protein_1909 IS3 family transposase ISSd1 Transposase
JGY96_RS09805 () 1953707..1953922 + 216 Protein_1910 serine/threonine-protein phosphatase -
JGY96_RS09810 () 1953923..1954114 - 192 WP_001296140.1 YebW family protein -
JGY96_RS09815 () 1954219..1954455 - 237 WP_001295499.1 YebV family protein -
JGY96_RS09820 () 1954573..1956012 - 1440 WP_025757846.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
JGY96_RS09825 () 1956092..1958725 - 2634 Protein_1914 hypothetical protein VF
JGY96_RS09830 () 1958694..1959978 - 1285 Protein_1915 membrane integrity lipid transport subunit YebS -
JGY96_RS09835 () 1960108..1960605 + 498 WP_001043881.1 L-methionine (R)-S-oxide reductase -
JGY96_RS09840 () 1960702..1961400 + 699 WP_000431370.1 RNA chaperone ProQ -
JGY96_RS09845 () 1961420..1963468 + 2049 WP_025757849.1 carboxy terminal-processing peptidase -
JGY96_RS09850 () 1963660..1964541 + 882 WP_000984517.1 protease HtpX -
JGY96_RS09855 () 1964587..1965960 - 1374 WP_001317881.1 MFS transporter -
JGY96_RS09860 () 1966137..1966928 + 792 WP_001262182.1 DNA-binding transcriptional regulator KdgR -
JGY96_RS09865 () 1967071..1967310 - 240 WP_001211011.1 YobH family protein -
JGY96_RS09870 () 1967469..1967612 + 144 WP_000714550.1 PhoP/PhoQ regulator MgrB -
JGY96_RS09875 () 1967687..1967974 + 288 WP_001006860.1 YebO family protein -
JGY96_RS09880 () 1968644..1968787 + 144 WP_032157072.1 YobF family protein -
JGY96_RS09885 () 1968800..1969009 + 210 WP_001062678.1 transcription antiterminator/RNA stability regulator CspE -
JGY96_RS09890 () 1969175..1969984 + 810 WP_000010128.1 23S rRNA (guanine(745)-N(1))-methyltransferase -
JGY96_RS09895 () 1969981..1970547 - 567 WP_005068711.1 manganese efflux pump MntP -
JGY96_RS09900 () 1971453..1971454 - 2 WP_153933088.1 IS1 family transposase IS1X1 Transposase
JGY96_RS09905 () 1971735..1972211 - 477 WP_000156246.1 DUF986 family protein -
JGY96_RS09910 () 1972266..1973117 - 852 WP_025758905.1 PTS mannose transporter subunit IID -
JGY96_RS09915 () 1973130..1973930 - 801 WP_000406926.1 PTS mannose transporter subunit IIC -
JGY96_RS09920 () 1973993..1974964 - 972 WP_000150543.1 PTS mannose transporter subunit IIAB -
JGY96_RS09925 () 1975427..1976977 + 1551 WP_025758901.1 CNNM family cation transport protein YoaE -
JGY96_RS09930 () 1976981..1977160 - 180 Protein_1935 EAL domain-containing protein -
JGY96_RS09935 () 1977621..1977622 - 2 WP_254100653.1 IS1 family transposase IS1X1 Transposase
JGY96_RS09940 () 1977930..1979354 - 1425 Protein_1937 hypothetical protein VF
JGY96_RS09945 () 1979485..1980849 - 1365 WP_000624314.1 L-serine ammonia-lyase -
JGY96_RS09950 () 1981033..1981611 - 579 WP_119182102.1 CoA pyrophosphatase -
JGY96_RS09955 () 1981615..1982976 - 1362 WP_000854982.1 aminodeoxychorismate synthase component 1 -
JGY96_RS09960 () 1983050..1983229 + 180 WP_000457332.1 YoaH family protein -
JGY96_RS09965 () 1983349..1983648 - 300 WP_001111995.1 DUF1889 family protein -
JGY96_RS09975 () 1984846..1985190 - 345 WP_001295493.1 RidA family protein -
JGY96_RS09980 () 1985322..1987232 + 1911 WP_025758513.1 ATP-dependent DNA helicase -
JGY96_RS09985 () 1987290..1987985 + 696 WP_001220997.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
JGY96_RS09990 () 1988025..1988606 + 582 WP_000290576.1 Slp family lipoprotein YeaY -
JGY96_RS09995 () 1988811..1990496 + 1686 WP_005049882.1 long-chain-fatty-acid--CoA ligase FadD -
JGY96_RS10000 () 1990578..1991693 + 1116 WP_025758511.1 ribonuclease D -
JGY96_RS10005 () 1991747..1992712 - 966 WP_254100656.1 carnitine monooxygenase subunit YeaX -
JGY96_RS10010 () 1992768..1993385 - 618 Protein_1951 carnitine monooxygenase subunit YeaW -
JGY96_RS10015 () 1993727..1994278 - 552 WP_071993815.1 helix-turn-helix transcriptional regulator -
JGY96_RS10020 () 1994504..1994731 + 228 WP_001274794.1 helix-turn-helix domain-containing protein -
JGY96_RS10025 () 1994725..1995093 + 369 Protein_1954 transposase -
JGY96_RS10030 () 1995208..1995282 - 75 WP_001386836.1 protein YoaJ -
JGY96_RS10035 () 1995285..1995383 - 99 WP_001219350.1 YoaK family small membrane protein -
JGY96_RS10040 () 1995416..1996441 - 1026 WP_005068753.1 diguanylate cyclase DgcP -
JGY96_RS10045 () 1996624..1996878 + 255 WP_000691930.1 DUF333 domain-containing lipoprotein YoaF -
JGY96_RS10050 () 1996900..1997247 - 348 WP_005049895.1 DUF488 domain-containing protein -
JGY96_RS10055 () 1997302..1998483 - 1182 Protein_1960 2-nitroimidazole transporter -
JGY96_RS10060 () 1998580..1999401 + 822 WP_000972265.1 DNA-binding transcriptional regulator NimR -
JGY96_RS10065 () 1999358..1999804 - 447 WP_000460707.1 DUF441 domain-containing protein -
JGY96_RS10070 () 1999974..2000078 + 105 WP_000999629.1 small membrane protein YoaI -
JGY96_RS10075 () 2000079..2000582 - 504 WP_025758505.1 mischarged aminoacyl-tRNA deacylase -
JGY96_RS10080 () 2000625..2001728 - 1104 WP_075288209.1 GAPES1 domain-containing protein -
JGY96_RS10085 () 2001767..2002889 + 1123 Protein_1966 IS3 family transposase ISSd1 Transposase
JGY96_RS10090 () 2002932..2003318 - 387 Protein_1967 diguanylate cylase -
JGY96_RS10095 () 2003319..2004794 - 1476 WP_119182073.1 GGDEF domain-containing protein -
JGY96_RS10100 () 2004941..2006220 - 1280 Protein_1969 YeaH/YhbH family protein -
JGY96_RS10105 () 2006333..2008267 - 1935 WP_119182072.1 protein kinase YeaG -
JGY96_RS10110 () 2008703..2009449 + 747 WP_000163771.1 scaffolding protein MipA -
JGY96_RS10115 () 2009539..2010300 + 762 WP_001186358.1 aldo/keto reductase -
JGY96_RS10120 () 2010351..2011235 - 885 WP_005068783.1 D-hexose-6-phosphate mutarotase -
JGY96_RS10125 () 2011319..2012314 - 996 WP_000153502.1 glyceraldehyde-3-phosphate dehydrogenase -
JGY96_RS10130 () 2012656..2013069 + 414 WP_001284613.1 peptide-methionine (R)-S-oxide reductase MsrB -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance