MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 118030 bp
Accession: NZ_CP064311 Location: 2755977..2874006 Organism: Lacticaseibacillus paracasei subsp. tolerans strain MGB0625 Replicon: chromosome
Accession: NZ_CP064311 Location: 2755977..2874006 Organism: Lacticaseibacillus paracasei subsp. tolerans strain MGB0625 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LacP0625_RS13390 () | 2751923..2752588 | + | 666 | WP_003567650.1 | CBS domain-containing protein | - |
| LacP0625_RS13395 () | 2752864..2753568 | + | 705 | WP_003576467.1 | L,D-transpeptidase | - |
| LacP0625_RS13400 () | 2753962..2754273 | + | 312 | WP_016369531.1 | hypothetical protein | - |
| LacP0625_RS13405 () | 2754516..2755949 | - | 1434 | WP_016369532.1 | glutamate synthase subunit beta | - |
| LacP0625_RS13410 () | 2756085..2760542 | - | 4458 | WP_016387846.1 | glutamate synthase large subunit | - |
| LacP0625_RS13415 () | 2760816..2761337 | - | 522 | WP_003567657.1 | QueT transporter family protein | - |
| LacP0625_RS13420 () | 2761521..2761904 | - | 384 | WP_194957911.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| LacP0625_RS13425 () | 2761924..2762172 | - | 249 | WP_003567665.1 | antitoxin | Antitoxin Detail |
| LacP0625_RS13430 () | 2762240..2763376 | - | 1137 | WP_016369534.1 | alanine racemase | - |
| LacP0625_RS13435 () | 2763363..2763737 | - | 375 | WP_003567669.1 | holo-ACP synthase | - |
| LacP0625_RS13440 () | 2763907..2765415 | - | 1509 | WP_016387847.1 | DEAD/DEAH box helicase | - |
| LacP0625_RS13445 () | 2765541..2765684 | - | 144 | WP_003588978.1 | hypothetical protein | - |
| LacP0625_RS13450 () | 2765715..2767103 | - | 1389 | WP_003567677.1 | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase | - |
| LacP0625_RS13455 () | 2767164..2767928 | - | 765 | WP_003576482.1 | hypothetical protein | - |
| LacP0625_RS13460 () | 2767994..2768191 | - | 198 | WP_013246092.1 | hypothetical protein | - |
| LacP0625_RS13465 () | 2768308..2768955 | + | 648 | WP_003571475.1 | hypothetical protein | - |
| LacP0625_RS13470 () | 2768952..2769629 | - | 678 | WP_003567683.1 | hypothetical protein | - |
| LacP0625_RS13475 () | 2769729..2770157 | + | 429 | WP_003567685.1 | hypothetical protein | - |
| LacP0625_RS13480 () | 2770866..2774675 | + | 3810 | WP_194958149.1 | hypothetical protein | VF |
| LacP0625_RS13485 () | 2774677..2774919 | + | 243 | WP_101512344.1 | hypothetical protein | - |
| LacP0625_RS13490 () | 2774962..2775285 | + | 324 | WP_101512264.1 | DUF961 family protein | - |
| LacP0625_RS13495 () | 2775304..2775675 | + | 372 | WP_003606403.1 | YdcP family protein | - |
| LacP0625_RS13500 () | 2775750..2776013 | + | 264 | WP_101512265.1 | hypothetical protein | - |
| LacP0625_RS13505 () | 2776027..2776278 | + | 252 | WP_101512345.1 | hypothetical protein | - |
| LacP0625_RS13510 () | 2776298..2776585 | + | 288 | WP_101512266.1 | hypothetical protein | - |
| LacP0625_RS13515 () | 2776582..2777970 | + | 1389 | WP_101512267.1 | DUF87 domain-containing protein | - |
| LacP0625_RS13520 () | 2777960..2778235 | + | 276 | WP_101512268.1 | hypothetical protein | - |
| LacP0625_RS13525 () | 2778240..2778500 | + | 261 | WP_101512269.1 | hypothetical protein | - |
| LacP0625_RS13530 () | 2778497..2781040 | - | 2544 | WP_194498715.1 | hypothetical protein | VF |
| LacP0625_RS13535 () | 2781420..2782610 | + | 1191 | WP_010491198.1 | XRE family transcriptional regulator | - |
| LacP0625_RS13540 () | 2782600..2782926 | + | 327 | WP_194957912.1 | hypothetical protein | - |
| LacP0625_RS13545 () | 2783057..2783791 | + | 735 | Protein_2633 | site-specific DNA-methyltransferase | - |
| LacP0625_RS13550 () | 2783890..2784111 | + | 222 | WP_003606383.1 | hypothetical protein | - |
| LacP0625_RS13555 () | 2784115..2784612 | + | 498 | WP_101512271.1 | antirestriction protein ArdA | - |
| LacP0625_RS13560 () | 2784674..2785066 | + | 393 | WP_010491186.1 | conjugal transfer protein | - |
| LacP0625_RS13565 () | 2785050..2787515 | + | 2466 | WP_101512272.1 | ATP-binding protein | - |
| LacP0625_RS13570 () | 2787502..2789595 | + | 2094 | WP_194957913.1 | conjugal transfer protein | - |
| LacP0625_RS13575 () | 2789592..2790587 | + | 996 | WP_005691161.1 | hypothetical protein | VF |
| LacP0625_RS13580 () | 2790597..2791130 | + | 534 | WP_194957914.1 | hypothetical protein | - |
| LacP0625_RS13585 () | 2791127..2792050 | + | 924 | WP_194957915.1 | conjugal transfer protein | - |
| LacP0625_RS13590 () | 2792222..2793176 | - | 955 | Protein_2642 | IS30 family transposase ISApl1 | Transposase |
| LacP0625_RS13595 () | 2793511..2794298 | + | 788 | WP_101512275.1 | IS5 family transposase ISCaa8 | Transposase |
| LacP0625_RS13600 () | 2794306..2794566 | + | 261 | Protein_2644 | divalent metal cation transporter | - |
| LacP0625_RS13605 () | 2794723..2795631 | + | 909 | WP_194957916.1 | magnesium transporter CorA family protein | - |
| LacP0625_RS13610 () | 2795922..2796592 | - | 671 | Protein_2646 | IS5 family transposase ISCaa8 | Transposase |
| LacP0625_RS13615 () | 2796585..2796878 | + | 294 | Protein_2647 | transposase | - |
| LacP0625_RS13620 () | 2797242..2797925 | - | 684 | WP_101512277.1 | IS6 family transposase ISBth20 | Transposase |
| LacP0625_RS13625 () | 2798180..2800180 | - | 2001 | WP_194957917.1 | glycosyl hydrolase 53 family protein | - |
| LacP0625_RS13630 () | 2800463..2800795 | - | 333 | WP_101512279.1 | PTS lactose/cellobiose transporter subunit IIA | - |
| LacP0625_RS13635 () | 2800815..2802257 | - | 1443 | WP_101512280.1 | 6-phospho-beta-galactosidase | - |
| LacP0625_RS13640 () | 2802273..2804000 | - | 1728 | WP_101512281.1 | lactose-specific PTS transporter subunit EIIC | - |
| LacP0625_RS13645 () | 2804322..2805311 | - | 990 | WP_101512282.1 | LacI family DNA-binding transcriptional regulator | - |
| LacP0625_RS13650 () | 2805637..2806320 | + | 684 | WP_002816607.1 | IS6 family transposase ISBth20 | Transposase |
| LacP0625_RS13655 () | 2806427..2808106 | - | 1680 | WP_003603298.1 | D-lactate dehydrogenase | - |
| LacP0625_RS13660 () | 2808311..2809231 | + | 921 | WP_003574021.1 | IS30 family transposase ISLpl1 | Transposase |
| LacP0625_RS13665 () | 2809273..2809989 | - | 717 | WP_194958151.1 | IS3 family transposase IS153 | Transposase |
| LacP0625_RS13670 () | 2809999..2810503 | - | 505 | Protein_2658 | transposase | - |
| LacP0625_RS13675 () | 2810584..2811540 | - | 957 | Protein_2659 | DEAD/DEAH box helicase family protein | - |
| LacP0625_RS13680 () | 2811521..2812813 | - | 1293 | WP_115652512.1 | hypothetical protein | - |
| LacP0625_RS13685 () | 2812815..2815790 | - | 2976 | WP_115652514.1 | type III restriction-modification system endonuclease | - |
| LacP0625_RS13690 () | 2815794..2817308 | - | 1515 | WP_194957918.1 | site-specific DNA-methyltransferase | - |
| LacP0625_RS13695 () | 2817335..2818255 | + | 921 | WP_003574021.1 | IS30 family transposase ISLpl1 | Transposase |
| LacP0625_RS13700 () | 2818276..2818842 | - | 567 | Protein_2664 | site-specific DNA-methyltransferase | - |
| LacP0625_RS13705 () | 2818962..2819735 | - | 774 | WP_194957919.1 | hypothetical protein | - |
| LacP0625_RS13710 () | 2819745..2820899 | - | 1155 | WP_032953860.1 | GTP-binding DUF697 domain-containing protein | - |
| LacP0625_RS13715 () | 2820889..2821155 | - | 267 | WP_005691077.1 | hypothetical protein | - |
| LacP0625_RS13720 () | 2821255..2821608 | - | 354 | WP_076652435.1 | HNH endonuclease family protein | - |
| LacP0625_RS13725 () | 2821586..2821819 | + | 234 | Protein_2669 | transposase | - |
| LacP0625_RS13730 () | 2822001..2822354 | + | 354 | Protein_2670 | IS5 family transposase ISLca2 | Transposase |
| LacP0625_RS13735 () | 2822363..2822869 | + | 507 | Protein_2671 | IS6 family transposase ISBth20 | Transposase |
| LacP0625_RS13740 () | 2822945..2823628 | + | 684 | WP_101512283.1 | IS6 family transposase ISBth20 | Transposase |
| LacP0625_RS13745 () | 2823956..2824354 | + | 399 | WP_005691070.1 | sigma-70 family RNA polymerase sigma factor | - |
| LacP0625_RS13750 () | 2824375..2824632 | + | 258 | WP_019899265.1 | helix-turn-helix domain-containing protein | - |
| LacP0625_RS13755 () | 2824982..2825254 | + | 273 | WP_010490992.1 | helix-turn-helix domain-containing protein | - |
| LacP0625_RS13760 () | 2825306..2826544 | + | 1239 | WP_101512284.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| LacP0625_RS13765 () | 2826699..2826950 | - | 252 | WP_016376756.1 | type B 50S ribosomal protein L31 | - |
| LacP0625_RS13770 () | 2827046..2828305 | - | 1260 | WP_016380627.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| LacP0625_RS13775 () | 2828941..2830545 | - | 1605 | WP_003567691.1 | CTP synthase | - |
| LacP0625_RS13780 () | 2830785..2831666 | - | 882 | WP_003567693.1 | DUF1211 domain-containing protein | - |
| LacP0625_RS13785 () | 2832084..2832764 | - | 681 | WP_003567695.1 | DNA-directed RNA polymerase subunit delta | - |
| LacP0625_RS13790 () | 2832808..2833254 | - | 447 | WP_003567697.1 | DUF1934 domain-containing protein | - |
| LacP0625_RS13795 () | 2833435..2834283 | + | 849 | WP_003567700.1 | lipoate--protein ligase family protein | - |
| LacP0625_RS13800 () | 2834273..2835625 | + | 1353 | WP_003567702.1 | HD domain-containing protein | - |
| LacP0625_RS13805 () | 2835634..2836086 | - | 453 | WP_003567704.1 | NUDIX hydrolase | - |
| LacP0625_RS13810 () | 2836158..2837216 | + | 1059 | WP_003581107.1 | YdcF family protein | - |
| LacP0625_RS13815 () | 2837279..2837650 | + | 372 | WP_003571482.1 | large-conductance mechanosensitive channel protein MscL | - |
| LacP0625_RS13820 () | 2837807..2838985 | - | 1179 | WP_194957920.1 | amidohydrolase family protein | - |
| LacP0625_RS13825 () | 2839065..2840414 | - | 1350 | WP_194957921.1 | M20/M25/M40 family metallo-hydrolase | - |
| LacP0625_RS13830 () | 2840660..2841850 | + | 1191 | WP_003571485.1 | hypothetical protein | - |
| LacP0625_RS13835 () | 2842013..2842351 | - | 339 | WP_003588989.1 | ASCH domain-containing protein | - |
| LacP0625_RS13840 () | 2842397..2842816 | - | 420 | WP_016363987.1 | hypothetical protein | - |
| LacP0625_RS13845 () | 2843002..2843976 | - | 975 | WP_003567718.1 | ribose-phosphate diphosphokinase | - |
| LacP0625_RS13850 () | 2844074..2845462 | - | 1389 | WP_016384211.1 | Bifunctional protein GlmU | VF |
| LacP0625_RS13855 () | 2845602..2846795 | - | 1194 | WP_016387849.1 | RDD family protein | - |
| LacP0625_RS13860 () | 2846792..2847640 | - | 849 | WP_003567724.1 | pur operon repressor | - |
| LacP0625_RS13865 () | 2847874..2848524 | + | 651 | WP_003567726.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| LacP0625_RS13870 () | 2848517..2849278 | + | 762 | WP_003567728.1 | iron export ABC transporter permease subunit FetB | - |
| LacP0625_RS13875 () | 2849368..2850246 | - | 879 | WP_003567730.1 | cation diffusion facilitator family transporter | - |
| LacP0625_RS13880 () | 2850301..2851179 | - | 879 | WP_003567732.1 | 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase | - |
| LacP0625_RS13885 () | 2851435..2851686 | - | 252 | WP_003567734.1 | Veg family protein | - |
| LacP0625_RS13890 () | 2851804..2852700 | - | 897 | WP_003567736.1 | 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA | - |
| LacP0625_RS13895 () | 2852687..2853256 | - | 570 | WP_003567738.1 | ribonuclease M5 | - |
| LacP0625_RS13900 () | 2853253..2854032 | - | 780 | WP_003567740.1 | TatD family hydrolase | - |
| LacP0625_RS13905 () | 2854050..2854532 | - | 483 | WP_011674940.1 | PTS sugar transporter subunit IIA | - |
| LacP0625_RS13910 () | 2854751..2855749 | + | 999 | WP_003567744.1 | tagatose 1,6-diphosphate aldolase | - |
| LacP0625_RS13915 () | 2855941..2856822 | + | 882 | WP_003589002.1 | aldose 1-epimerase family protein | - |
| LacP0625_RS13920 () | 2857015..2857719 | + | 705 | WP_016384209.1 | LytTR family DNA-binding domain-containing protein | - |
| LacP0625_RS13925 () | 2857706..2858617 | + | 912 | WP_016369497.1 | GHKL domain-containing protein | - |
| LacP0625_RS13930 () | 2858671..2860497 | + | 1827 | WP_016384208.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| LacP0625_RS13935 () | 2860484..2862400 | + | 1917 | WP_016387851.1 | ABC transporter ATP-binding protein/permease | - |
| LacP0625_RS13940 () | 2862518..2864500 | - | 1983 | WP_003606073.1 | methionine--tRNA ligase | - |
| LacP0625_RS13945 () | 2864579..2865457 | - | 879 | WP_003567758.1 | proline iminopeptidase-family hydrolase | - |
| LacP0625_RS13950 () | 2865666..2866478 | - | 813 | WP_194957922.1 | DUF72 domain-containing protein | - |
| LacP0625_RS13955 () | 2866471..2866950 | - | 480 | WP_194957923.1 | 8-oxo-dGTP diphosphatase | - |
| LacP0625_RS13960 () | 2867096..2868001 | - | 906 | WP_003592021.1 | lactate dehydrogenase | - |
| LacP0625_RS13965 () | 2868029..2868637 | - | 609 | WP_003567766.1 | DUF1211 domain-containing protein | - |
| LacP0625_RS13970 () | 2868729..2869421 | - | 693 | WP_003567768.1 | NAD-dependent protein deacylase | - |
| LacP0625_RS13975 () | 2869705..2869851 | + | 147 | WP_003567770.1 | hypothetical protein | - |
| LacP0625_RS13980 () | 2869848..2870774 | - | 927 | WP_003585694.1 | hypothetical protein | - |
| LacP0625_RS13985 () | 2871083..2872003 | + | 921 | WP_003574021.1 | IS30 family transposase ISLpl1 | Transposase |
| LacP0625_RS13990 () | 2872080..2872589 | + | 510 | WP_003567772.1 | YbhB/YbcL family Raf kinase inhibitor-like protein | - |
| LacP0625_RS13995 () | 2872665..2872943 | - | 279 | WP_003581148.1 | hypothetical protein | - |
| LacP0625_RS14000 () | 2872978..2873961 | - | 984 | WP_194957924.1 | DUF1002 domain-containing protein | - |
| LacP0625_RS14005 () | 2874179..2875120 | - | 942 | WP_003567778.1 | exopolyphosphatase | - |
| LacP0625_RS14010 () | 2875117..2877279 | - | 2163 | WP_003585697.1 | RNA degradosome polyphosphate kinase | - |
| LacP0625_RS14015 () | 2877276..2878805 | - | 1530 | WP_003606084.1 | exopolyphosphatase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|