MGE detailed information
MGE type: Prophage MGE length: 62121 bp
Accession: NZ_CP063046 Location: 5243089..5305209 Organism: Escherichia coli strain KC-Dl-1 Replicon: chromosome
Accession: NZ_CP063046 Location: 5243089..5305209 Organism: Escherichia coli strain KC-Dl-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IL980_RS25265 () | 5238945..5239745 | + | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| IL980_RS25270 () | 5239758..5240609 | + | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| IL980_RS25275 () | 5240664..5241122 | + | 459 | WP_000156255.1 | DUF986 family protein | - |
| IL980_RS25280 () | 5241551..5242117 | + | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| IL980_RS25285 () | 5242114..5242923 | - | 810 | WP_197613115.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| IL980_RS25290 () | 5243089..5243298 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| IL980_RS25295 () | 5243311..5243454 | - | 144 | WP_001295496.1 | YobF family protein | - |
| IL980_RS25300 () | 5244124..5244411 | - | 288 | WP_001006866.1 | YebO family protein | - |
| IL980_RS25305 () | 5244486..5244629 | - | 144 | WP_000714544.1 | PhoP/PhoQ regulator MgrB | - |
| IL980_RS25310 () | 5244788..5245027 | + | 240 | WP_001211011.1 | hypothetical protein | - |
| IL980_RS25315 () | 5245171..5245962 | - | 792 | WP_001262188.1 | DNA-binding transcriptional regulator KdgR | - |
| IL980_RS25320 () | 5246139..5247512 | + | 1374 | WP_001127222.1 | MFS transporter | - |
| IL980_RS25325 () | 5247558..5248439 | - | 882 | WP_000984517.1 | protease HtpX | - |
| IL980_RS25330 () | 5248631..5250679 | - | 2049 | WP_001055805.1 | carboxy terminal-processing peptidase | - |
| IL980_RS25335 () | 5250699..5251397 | - | 699 | WP_000431376.1 | RNA chaperone ProQ | - |
| IL980_RS25340 () | 5251494..5251991 | - | 498 | WP_001043884.1 | L-methionine (R)-S-oxide reductase | - |
| IL980_RS25345 () | 5252121..5253404 | + | 1284 | WP_001207282.1 | membrane integrity lipid transport subunit YebS | - |
| IL980_RS25350 () | 5253373..5256006 | + | 2634 | WP_021580146.1 | hypothetical protein | VF |
| IL980_RS25355 () | 5256086..5257525 | + | 1440 | WP_197613116.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IL980_RS25360 () | 5257643..5257879 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IL980_RS25365 () | 5257984..5258175 | + | 192 | WP_001296140.1 | YebW family protein | - |
| IL980_RS25370 () | 5258176..5258832 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - () | 5258929..5259197 | + | 269 | - | - | Antitoxin Detail |
| - () | 5258967..5259069 | - | 103 | - | - | Toxin Detail |
| IL980_RS25375 () | 5259227..5259568 | - | 342 | WP_000977376.1 | YebY family protein | - |
| IL980_RS25380 () | 5259581..5260453 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| IL980_RS25385 () | 5260457..5260831 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| IL980_RS25390 () | 5260970..5261200 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IL980_RS25395 () | 5261302..5261958 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| IL980_RS25400 () | 5261981..5262643 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IL980_RS25405 () | 5262640..5264700 | - | 2061 | WP_000936941.1 | oligopeptidase B | - |
| IL980_RS25410 () | 5264909..5265568 | - | 660 | WP_000024728.1 | tellurite resistance TerB family protein | - |
| IL980_RS25415 () | 5265895..5266251 | - | 357 | WP_001295500.1 | protein YebF | - |
| IL980_RS25420 () | 5266318..5266608 | - | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| IL980_RS25425 () | 5266742..5267920 | + | 1179 | WP_000173466.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| IL980_RS25430 () | 5267976..5268617 | - | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| IL980_RS25435 () | 5268654..5270465 | - | 1812 | WP_001069461.1 | phosphogluconate dehydratase | - |
| IL980_RS25440 () | 5270700..5272175 | - | 1476 | WP_000301727.1 | glucose-6-phosphate dehydrogenase | - |
| IL980_RS25445 () | 5272513..5273382 | + | 870 | WP_001056695.1 | DNA-binding transcriptional regulator HexR | - |
| IL980_RS25450 () | 5273510..5274952 | + | 1443 | WP_000091149.1 | pyruvate kinase | - |
| IL980_RS25455 () | 5275084..5276055 | - | 972 | WP_001296141.1 | hypothetical protein | VF |
| IL980_RS25460 () | 5276174..5277496 | - | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| IL980_RS25465 () | 5277512..5278444 | - | 933 | WP_001347089.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| IL980_RS25470 () | 5278523..5279278 | + | 756 | WP_000202996.1 | hypothetical protein | VF |
| IL980_RS25475 () | 5279275..5280060 | + | 786 | WP_000571473.1 | hypothetical protein | VF |
| IL980_RS25480 () | 5280205..5281215 | - | 1011 | WP_000568519.1 | Holliday junction branch migration DNA helicase RuvB | - |
| IL980_RS25485 () | 5281224..5281835 | - | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| IL980_RS25490 () | 5281974..5282039 | - | 66 | WP_072123646.1 | stress response small protein YobI | - |
| IL980_RS25495 () | 5282112..5282714 | + | 603 | WP_001024939.1 | YebB family permuted papain-like enzyme | - |
| IL980_RS25500 () | 5282716..5283237 | - | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| IL980_RS25505 () | 5283272..5284012 | - | 741 | WP_042095953.1 | hypothetical protein | VF |
| IL980_RS25510 () | 5284041..5284493 | - | 453 | WP_077393227.1 | dihydroneopterin triphosphate diphosphatase | - |
| IL980_RS25515 () | 5284486..5286258 | - | 1773 | WP_001258675.1 | aspartate--tRNA ligase | - |
| IL980_RS25520 () | 5286568..5287134 | + | 567 | WP_000891601.1 | hydrolase | - |
| IL980_RS25525 () | 5287488..5287736 | + | 249 | WP_197613117.1 | DinI-like family protein | - |
| IL980_RS25530 () | 5287871..5288200 | + | 330 | WP_105290969.1 | YkgJ family cysteine cluster protein | - |
| IL980_RS25535 () | 5288306..5288590 | - | 285 | WP_197613118.1 | hypothetical protein | - |
| IL980_RS25540 () | 5288633..5289673 | - | 1041 | WP_077395767.1 | tail fiber domain-containing protein | - |
| IL980_RS25545 () | 5289683..5289964 | - | 282 | WP_039720059.1 | hypothetical protein | - |
| IL980_RS25550 () | 5289964..5292342 | - | 2379 | WP_197613119.1 | prophage tail fiber N-terminal domain-containing protein | - |
| IL980_RS25555 () | 5292407..5293006 | - | 600 | WP_001228249.1 | hypothetical protein | VF |
| IL980_RS25560 () | 5293074..5296469 | - | 3396 | WP_197613120.1 | host specificity protein J | - |
| IL980_RS25565 () | 5296530..5297165 | - | 636 | WP_063267675.1 | tail assembly protein | - |
| IL980_RS25570 () | 5297063..5297807 | - | 745 | Protein_4996 | phage tail protein | - |
| IL980_RS25575 () | 5297813..5298511 | - | 699 | WP_021549942.1 | phage minor tail protein L | - |
| IL980_RS25580 () | 5298511..5298840 | - | 330 | WP_021549941.1 | phage tail protein | - |
| IL980_RS25585 () | 5298837..5299565 | - | 729 | WP_063267668.1 | phage tail tape measure protein | - |
| IL980_RS25590 () | 5299607..5301399 | - | 1793 | Protein_5000 | phage tail tape measure protein | - |
| IL980_RS25595 () | 5301392..5301826 | - | 435 | Protein_5001 | phage tail assembly protein T | - |
| IL980_RS25600 () | 5301808..5302230 | - | 423 | WP_000479154.1 | phage minor tail protein G | - |
| IL980_RS25605 () | 5302246..5302498 | - | 253 | Protein_5003 | Ig domain-containing protein | - |
| IL980_RS25610 () | 5302526..5302986 | - | 461 | Protein_5004 | phage tail protein | - |
| IL980_RS25615 () | 5302994..5303390 | - | 397 | Protein_5005 | phage tail protein | - |
| IL980_RS25620 () | 5303387..5303964 | - | 578 | Protein_5006 | phage tail protein | - |
| IL980_RS25625 () | 5303976..5304329 | - | 354 | Protein_5007 | phage tail protein | - |
| IL980_RS25630 () | 5304341..5304736 | - | 396 | WP_000158868.1 | DNA-packaging protein FI | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|