MGE detailed information
MGE type: Conjugative plasmid MGE length: 82943 bp
Accession: NZ_CP059121 Location: 1..82943 Organism: Escherichia coli strain Ec42 Replicon: plasmid pEc42_2
Accession: NZ_CP059121 Location: 1..82943 Organism: Escherichia coli strain Ec42 Replicon: plasmid pEc42_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H0X94_RS24785 (46) | 46..1077 | + | 1032 | WP_023518831.1 | plasmid replication initiator RepA | - |
| H0X94_RS24790 (1773) | 1773..1913 | + | 141 | WP_032072206.1 | hypothetical protein | - |
| H0X94_RS24795 (2146) | 2146..2655 | - | 510 | WP_012783913.1 | hypothetical protein | - |
| H0X94_RS24800 (2711) | 2711..3313 | - | 603 | WP_161654937.1 | ProQ/FINO family protein | - |
| H0X94_RS24805 (3667) | 3667..5013 | + | 1347 | WP_001703911.1 | protein YagA | - |
| H0X94_RS24810 (5512) | 5512..5814 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| H0X94_RS24815 (5811) | 5811..6437 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| H0X94_RS24820 (6657) | 6657..7928 | - | 1272 | WP_001703910.1 | Y-family DNA polymerase | - |
| H0X94_RS24825 (7928) | 7928..8365 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| H0X94_RS24830 (8362) | 8362..8610 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| H0X94_RS24835 (9028) | 9028..9930 | + | 903 | WP_001739825.1 | DUF1281 domain-containing protein | - |
| H0X94_RS25905 (9934) | 9934..10020 | + | 87 | Protein_11 | hypothetical protein | - |
| H0X94_RS24840 (10025) | 10025..10360 | - | 336 | WP_001340323.1 | hypothetical protein | - |
| H0X94_RS24845 (10698) | 10698..11678 | + | 981 | WP_012783921.1 | plasmid segregation protein ParM | - |
| H0X94_RS24850 (11681) | 11681..12103 | + | 423 | WP_000774832.1 | plasmid partitioning/stability family protein | - |
| H0X94_RS24855 (12107) | 12107..12418 | + | 312 | WP_033863049.1 | hypothetical protein | - |
| H0X94_RS24860 (12494) | 12494..13177 | + | 684 | WP_000086127.1 | DNA methylase | - |
| H0X94_RS24865 (13178) | 13178..13399 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| H0X94_RS24870 (13329) | 13329..13847 | + | 519 | WP_202864534.1 | DUF1380 family protein | - |
| H0X94_RS24875 (13892) | 13892..14662 | + | 771 | WP_096947577.1 | hypothetical protein | - |
| H0X94_RS24880 (15075) | 15075..15500 | + | 426 | WP_001198941.1 | antirestriction protein | - |
| H0X94_RS24885 (15547) | 15547..15969 | + | 423 | WP_009426926.1 | DUF1380 family protein | - |
| H0X94_RS24890 (15966) | 15966..16157 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| H0X94_RS24895 (16228) | 16228..16542 | + | 315 | WP_001434357.1 | hypothetical protein | - |
| H0X94_RS24900 (16926) | 16926..17453 | + | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| H0X94_RS24905 (17511) | 17511..17744 | + | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| H0X94_RS24910 (17803) | 17803..19761 | + | 1959 | WP_011264061.1 | ParB/RepB/Spo0J family partition protein | - |
| H0X94_RS24915 (19814) | 19814..20248 | + | 435 | WP_001402001.1 | conjugation system SOS inhibitor PsiB | - |
| H0X94_RS24920 (20245) | 20245..20964 | + | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| H0X94_RS24925 (20961) | 20961..21557 | + | 597 | WP_000977995.1 | hypothetical protein | - |
| H0X94_RS24930 (22019) | 22019..22519 | + | 501 | WP_000117626.1 | antirestriction protein ArdA | - |
| H0X94_RS24935 (23248) | 23248..23682 | + | 435 | WP_000218858.1 | hypothetical protein | - |
| H0X94_RS24940 (23776) | 23776..24042 | + | 267 | WP_000804663.1 | hypothetical protein | - |
| H0X94_RS24945 (24219) | 24219..24608 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| H0X94_RS24950 (24605) | 24605..25507 | + | 903 | WP_000038347.1 | Recombination-promoting nuclease RpnA | VF |
| H0X94_RS24955 (25569) | 25569..25775 | + | 207 | WP_000150314.1 | hypothetical protein | VF |
| H0X94_RS24960 (25806) | 25806..26057 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| H0X94_RS24970 (26637) | 26637..27485 | + | 849 | WP_001599394.1 | DUF4942 domain-containing protein | - |
| H0X94_RS24975 (27572) | 27572..27907 | - | 336 | WP_021529212.1 | hypothetical protein | - |
| H0X94_RS24980 (28141) | 28141..28473 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| H0X94_RS24985 (28484) | 28484..31183 | + | 2700 | WP_011264053.1 | Protein TraI | Relaxase |
| H0X94_RS24990 (31221) | 31221..33512 | - | 2292 | WP_011264051.1 | F-type conjugative transfer protein TrbC | - |
| H0X94_RS24995 (33505) | 33505..34575 | - | 1071 | WP_011264050.1 | IncI1-type conjugal transfer protein TrbB | - |
| H0X94_RS25000 (34594) | 34594..35802 | - | 1209 | WP_011264049.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (35982) | 35982..36039 | - | 58 | NuclAT_1 | - | - |
| - (35982) | 35982..36039 | - | 58 | NuclAT_1 | - | - |
| - (35982) | 35982..36039 | - | 58 | NuclAT_1 | - | - |
| - (35982) | 35982..36039 | - | 58 | NuclAT_1 | - | - |
| H0X94_RS25005 (36109) | 36109..37194 | - | 1086 | WP_074446708.1 | protein finQ | - |
| - (37403) | 37403..37463 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (37403) | 37403..37463 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (37403) | 37403..37463 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (37403) | 37403..37463 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| H0X94_RS25010 (37515) | 37515..37667 | + | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| H0X94_RS25015 (37739) | 37739..37990 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| H0X94_RS25020 (38290) | 38290..38586 | + | 297 | WP_011264046.1 | DinQ-like type I toxin DqlB | - |
| H0X94_RS25025 (38651) | 38651..38827 | - | 177 | WP_001054897.1 | hypothetical protein | - |
| H0X94_RS25030 (39223) | 39223..39432 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| H0X94_RS25035 (39504) | 39504..40166 | - | 663 | WP_000644796.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| H0X94_RS25040 (40237) | 40237..42405 | - | 2169 | WP_023518847.1 | DotA/TraY family protein | - |
| H0X94_RS25045 (42502) | 42502..43086 | - | 585 | WP_001746157.1 | IncI1-type conjugal transfer protein TraX | - |
| H0X94_RS25050 (43115) | 43115..44317 | - | 1203 | WP_001189160.1 | IncI1-type conjugal transfer protein TraW | - |
| H0X94_RS25055 (44284) | 44284..44898 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| H0X94_RS25060 (44898) | 44898..47942 | - | 3045 | WP_023518848.1 | IncI1-type conjugal transfer protein TraU | - |
| H0X94_RS25065 (48032) | 48032..48832 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| H0X94_RS25070 (48816) | 48816..49004 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| H0X94_RS25075 (49068) | 49068..49472 | - | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| H0X94_RS25080 (49523) | 49523..50050 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| H0X94_RS25085 (50050) | 50050..50754 | - | 705 | WP_001493811.1 | IncI1-type conjugal transfer protein TraP | - |
| H0X94_RS25090 (50754) | 50754..52043 | - | 1290 | WP_011264042.1 | conjugal transfer protein TraO | - |
| H0X94_RS25095 (52046) | 52046..53029 | - | 984 | WP_001191880.1 | hypothetical protein | VF |
| H0X94_RS25100 (53040) | 53040..53732 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| H0X94_RS25105 (53729) | 53729..54076 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| H0X94_RS25110 (54094) | 54094..57858 | - | 3765 | WP_219334565.1 | DUF5710 domain-containing protein | - |
| H0X94_RS25115 (57948) | 57948..58499 | - | 552 | WP_000014586.1 | Phospholipase D | VF |
| H0X94_RS25120 (58514) | 58514..58804 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| H0X94_RS25125 (58801) | 58801..59949 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| H0X94_RS25130 (59946) | 59946..60764 | - | 819 | WP_032220737.1 | hypothetical protein | VF |
| H0X94_RS25135 (60761) | 60761..61219 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| H0X94_RS25140 (61614) | 61614..62198 | - | 585 | WP_000977525.1 | histidine phosphatase family protein | - |
| H0X94_RS25145 (62258) | 62258..63460 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| H0X94_RS25150 (63546) | 63546..64370 | - | 825 | WP_001690630.1 | conjugal transfer protein TraE | - |
| H0X94_RS25155 (64521) | 64521..65675 | - | 1155 | WP_001139955.1 | site-specific integrase | - |
| H0X94_RS25160 (67196) | 67196..67444 | + | 249 | WP_001349157.1 | hypothetical protein | - |
| H0X94_RS25165 (67441) | 67441..68733 | - | 1293 | WP_001619585.1 | hypothetical protein | VF |
| H0X94_RS25170 (68733) | 68733..69389 | - | 657 | WP_001193549.1 | hypothetical protein | VF |
| H0X94_RS25175 (69374) | 69374..69934 | - | 561 | WP_000014005.1 | hypothetical protein | VF |
| H0X94_RS25180 (69944) | 69944..70558 | - | 615 | WP_000908226.1 | hypothetical protein | VF |
| H0X94_RS25185 (70575) | 70575..71660 | - | 1086 | WP_001208802.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| H0X94_RS25190 (71673) | 71673..73226 | - | 1554 | WP_023518854.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| H0X94_RS25195 (73237) | 73237..73689 | - | 453 | WP_001247337.1 | hypothetical protein | VF |
| H0X94_RS25200 (73676) | 73676..74971 | - | 1296 | WP_023518855.1 | type 4b pilus protein PilO2 | - |
| H0X94_RS25205 (74964) | 74964..76646 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| H0X94_RS25210 (76660) | 76660..77097 | - | 438 | WP_000539806.1 | hypothetical protein | VF |
| H0X94_RS25215 (77097) | 77097..78164 | - | 1068 | WP_001360287.1 | hypothetical protein | VF |
| H0X94_RS25220 (79211) | 79211..79465 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| H0X94_RS25225 (79637) | 79637..80320 | - | 684 | WP_023518856.1 | conjugal transfer protein TraC | - |
| H0X94_RS25230 (80574) | 80574..81107 | - | 534 | WP_001712498.1 | transcription termination/antitermination NusG family protein | - |
| H0X94_RS25235 (81549) | 81549..81836 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| H0X94_RS25910 (81874) | 81874..82032 | - | 159 | Protein_91 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|