MGE detailed information
MGE type: Conjugative plasmid MGE length: 68106 bp
Accession: NZ_CP058662 Location: 1..68106 Organism: Escherichia coli strain 005008 Replicon: plasmid pCMY42_005008
Accession: NZ_CP058662 Location: 1..68106 Organism: Escherichia coli strain 005008 Replicon: plasmid pCMY42_005008
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZR83_RS23230 () | 46..1077 | + | 1032 | WP_023518831.1 | RepZ | - |
| HZR83_RS23235 () | 2146..2655 | - | 510 | WP_012783913.1 | hypothetical protein | - |
| HZR83_RS23240 () | 2711..3313 | - | 603 | WP_001703912.1 | hypothetical protein | - |
| HZR83_RS23245 () | 3667..5013 | + | 1347 | WP_039052405.1 | hypothetical protein | - |
| HZR83_RS23250 () | 5520..5822 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| HZR83_RS23255 () | 5819..6445 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| HZR83_RS23260 () | 6633..7904 | - | 1272 | WP_001703910.1 | Y-family DNA polymerase | - |
| HZR83_RS23265 () | 7904..8341 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HZR83_RS23270 () | 8338..8586 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| HZR83_RS23275 () | 9004..9906 | + | 903 | WP_001739825.1 | DUF1281 domain-containing protein | - |
| HZR83_RS23280 () | 10001..10336 | - | 336 | WP_001340323.1 | hypothetical protein | - |
| HZR83_RS23285 () | 10674..11654 | + | 981 | WP_012783921.1 | plasmid segregation protein ParM | - |
| HZR83_RS23290 () | 11657..12079 | + | 423 | WP_000774832.1 | plasmid partitioning/stability family protein | - |
| HZR83_RS23295 () | 12083..12393 | + | 311 | Protein_13 | hypothetical protein | - |
| HZR83_RS23300 () | 12469..13152 | + | 684 | WP_000086127.1 | DNA methylase | - |
| HZR83_RS23305 () | 13153..13374 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| HZR83_RS23310 () | 13388..13822 | + | 435 | WP_011264065.1 | DUF1380 family protein | - |
| HZR83_RS23315 () | 13867..14637 | + | 771 | WP_011264064.1 | hypothetical protein | - |
| HZR83_RS23320 () | 15178..15480 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| HZR83_RS23325 () | 15527..15949 | + | 423 | WP_000271762.1 | DUF1380 family protein | - |
| HZR83_RS23330 () | 15946..16137 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| HZR83_RS23335 () | 16208..16522 | + | 315 | WP_001434357.1 | hypothetical protein | - |
| HZR83_RS23340 () | 16906..16980 | + | 75 | Protein_22 | single-stranded DNA-binding protein | - |
| HZR83_RS23345 () | 16981..18270 | + | 1290 | Protein_23 | hypothetical protein | - |
| HZR83_RS23350 () | 18323..18757 | + | 435 | WP_001402001.1 | conjugation system SOS inhibitor PsiB | - |
| HZR83_RS23355 () | 18754..19473 | + | 720 | WP_047149313.1 | plasmid SOS inhibition protein A | - |
| HZR83_RS23360 () | 19470..20066 | + | 597 | WP_000977995.1 | hypothetical protein | - |
| HZR83_RS23365 () | 20528..21028 | + | 501 | WP_000117626.1 | antirestriction protein ArdA | - |
| HZR83_RS23370 () | 21757..22191 | + | 435 | WP_000218858.1 | hypothetical protein | - |
| HZR83_RS23375 () | 22285..22551 | + | 267 | WP_000804663.1 | hypothetical protein | - |
| HZR83_RS23380 () | 22728..23117 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| HZR83_RS23385 () | 23114..24016 | + | 903 | WP_011264057.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| HZR83_RS23390 () | 24078..24284 | + | 207 | WP_000150314.1 | hypothetical protein | - |
| HZR83_RS23395 () | 24315..24566 | - | 252 | WP_000148285.1 | helix-turn-helix domain-containing protein | - |
| HZR83_RS23400 () | 24600..24797 | - | 198 | WP_001161107.1 | hypothetical protein | - |
| HZR83_RS23405 () | 25146..25994 | + | 849 | WP_001599394.1 | DUF4942 domain-containing protein | - |
| HZR83_RS23410 () | 26081..26416 | - | 336 | WP_021529212.1 | hypothetical protein | - |
| HZR83_RS23415 () | 26650..26982 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| HZR83_RS23420 () | 26993..29692 | + | 2700 | WP_011264053.1 | IncI1-type relaxase NikB | - |
| HZR83_RS23425 () | 29730..32021 | - | 2292 | WP_011264051.1 | hypothetical protein | - |
| HZR83_RS23430 () | 32014..33084 | - | 1071 | WP_011264050.1 | IncI1-type conjugal transfer protein TrbB | - |
| HZR83_RS23435 () | 33103..34311 | - | 1209 | WP_011264049.1 | IncI1-type conjugal transfer protein TrbA | - |
| - () | 34491..34548 | - | 58 | NuclAT_1 | - | - |
| - () | 34491..34548 | - | 58 | NuclAT_1 | - | - |
| - () | 34491..34548 | - | 58 | NuclAT_1 | - | - |
| - () | 34491..34548 | - | 58 | NuclAT_1 | - | - |
| HZR83_RS23440 () | 34618..35367 | - | 750 | Protein_42 | protein finQ | - |
| HZR83_RS23445 () | 35596..35913 | + | 318 | WP_000118520.1 | quaternary ammonium compound efflux SMR transporter SugE | - |
| HZR83_RS23450 () | 35910..36443 | - | 534 | WP_001221666.1 | lipocalin family protein | - |
| HZR83_RS23455 () | 36537..37682 | - | 1146 | WP_039023136.1 | class C extended-spectrum beta-lactamase CMY-42 | - |
| HZR83_RS23460 () | 38135..38832 | - | 698 | Protein_46 | IS1 family transposase | - |
| HZR83_RS23465 () | 39380..40063 | + | 684 | WP_023518856.1 | conjugal transfer protein TraC | - |
| HZR83_RS23470 () | 40235..40489 | + | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| HZR83_RS23475 () | 41536..42603 | + | 1068 | WP_001360287.1 | type IV pilus biogenesis lipoprotein PilL | - |
| HZR83_RS23480 () | 42603..43040 | + | 438 | WP_000539806.1 | type IV pilus biogenesis protein PilM | - |
| HZR83_RS23485 () | 43054..44736 | + | 1683 | WP_000748143.1 | PilN family type IVB pilus formation outer membrane protein | - |
| HZR83_RS23490 () | 44729..46024 | + | 1296 | Protein_52 | type 4b pilus protein PilO2 | - |
| HZR83_RS23495 () | 46011..46463 | + | 453 | WP_001247337.1 | type IV pilus biogenesis protein PilP | - |
| HZR83_RS23500 () | 46474..48027 | + | 1554 | WP_023518854.1 | Flp pilus assembly complex ATPase component TadA | - |
| HZR83_RS23505 () | 48040..49125 | + | 1086 | WP_001208802.1 | type II secretion system F family protein | - |
| HZR83_RS23510 () | 49142..49756 | + | 615 | WP_000908227.1 | type IV prepilin | - |
| HZR83_RS23515 () | 49766..50326 | + | 561 | WP_000014005.1 | lytic transglycosylase domain-containing protein | - |
| HZR83_RS23520 () | 50311..50967 | + | 657 | WP_001401940.1 | prepilin peptidase | - |
| HZR83_RS23525 () | 50967..52337 | + | 1371 | WP_021823510.1 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| HZR83_RS23530 () | 52334..52588 | + | 255 | WP_171904539.1 | prepilin | - |
| HZR83_RS23535 () | 52585..52833 | - | 249 | WP_001349157.1 | hypothetical protein | - |
| HZR83_RS23540 () | 53798..54016 | - | 219 | WP_071527775.1 | shufflon protein D' | - |
| HZR83_RS23545 () | 54065..54151 | - | 87 | Protein_63 | shufflon protein D' | - |
| HZR83_RS23550 () | 54150..55304 | + | 1155 | WP_001139955.1 | integrase | - |
| HZR83_RS23555 () | 55455..56279 | + | 825 | WP_023518851.1 | hypothetical protein | - |
| HZR83_RS23560 () | 56365..57567 | + | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| HZR83_RS23565 () | 57627..58211 | + | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| HZR83_RS23570 () | 58606..58722 | + | 117 | Protein_68 | IncI1-type conjugal transfer lipoprotein TraH | - |
| HZR83_RS23575 () | 58721..60475 | + | 1755 | Protein_69 | DotA/TraY family protein | - |
| HZR83_RS23580 () | 60546..61208 | + | 663 | WP_000644796.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| HZR83_RS23585 () | 61280..61489 | - | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| HZR83_RS23590 () | 61881..62057 | + | 177 | WP_001054897.1 | hypothetical protein | - |
| HZR83_RS23595 () | 62122..62418 | - | 297 | WP_011264046.1 | hypothetical protein | - |
| HZR83_RS23600 () | 62718..62969 | + | 252 | WP_001291964.1 | hypothetical protein | - |
| HZR83_RS23605 () | 63041..63193 | - | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| - () | 63245..63305 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - () | 63245..63305 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - () | 63245..63305 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - () | 63245..63305 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| HZR83_RS23610 () | 63508..63855 | + | 348 | Protein_76 | protein finQ | - |
| HZR83_RS23615 () | 64041..65198 | + | 1158 | Protein_77 | IS1380-like element ISEc9 family transposase | - |
| HZR83_RS23620 () | 65254..65951 | + | 698 | Protein_78 | IS1 family transposase | - |
| HZR83_RS23625 () | 65965..66270 | - | 306 | Protein_79 | transcription termination factor NusG | - |
| HZR83_RS23630 () | 66712..66999 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| HZR83_RS23635 () | 66917..67180 | - | 264 | WP_032180564.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|