MGE detailed information
MGE type: Conjugative plasmid MGE length: 118265 bp
Accession: NZ_CP056911 Location: 1..118265 Organism: Citrobacter freundii strain RHBSTW-00006 Replicon: plasmid pRHBSTW-00006_2
Accession: NZ_CP056911 Location: 1..118265 Organism: Citrobacter freundii strain RHBSTW-00006 Replicon: plasmid pRHBSTW-00006_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV030_RS25220 () | 204..674 | - | 471 | WP_011191345.1 | hypothetical protein | - |
| HV030_RS25225 () | 826..1116 | - | 291 | WP_011191344.1 | DUF1330 domain-containing protein | - |
| HV030_RS25230 () | 1179..1610 | - | 432 | WP_004357630.1 | heme-binding protein | - |
| HV030_RS25235 () | 1684..2694 | - | 1011 | WP_011191343.1 | Zinc-type alcohol dehydrogenase-like protein | VF |
| HV030_RS25240 () | 3300..3905 | + | 606 | WP_033982388.1 | sulfite oxidase-like oxidoreductase | - |
| HV030_RS25245 () | 4103..4800 | + | 698 | Protein_6 | IS1 family transposase IS1R | Transposase |
| HV030_RS25250 () | 4947..5921 | + | 975 | WP_181219984.1 | sensor domain-containing diguanylate cyclase | - |
| HV030_RS25255 () | 6633..6851 | + | 219 | WP_032934863.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| HV030_RS25260 () | 6853..7158 | + | 306 | WP_008322213.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| HV030_RS25265 () | 7160..7474 | + | 315 | WP_008322211.1 | hypothetical protein | - |
| HV030_RS25270 () | 7464..8255 | + | 792 | WP_008322208.1 | site-specific integrase | - |
| HV030_RS25275 () | 8454..9821 | - | 1368 | WP_181638753.1 | GntP family transporter | - |
| HV030_RS25280 () | 9907..10683 | - | 777 | WP_008322204.1 | HPr family phosphocarrier protein | - |
| HV030_RS25285 () | 10688..11326 | - | 639 | WP_008322203.1 | aldolase | - |
| HV030_RS25290 () | 11323..12585 | - | 1263 | WP_008322201.1 | four-carbon acid sugar kinase family protein | - |
| HV030_RS25295 () | 12582..13490 | - | 909 | WP_008322199.1 | NAD(P)-dependent oxidoreductase | - |
| HV030_RS25300 () | 13684..14478 | + | 795 | WP_008322197.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| HV030_RS25305 () | 14565..15503 | - | 939 | WP_008322195.1 | Recombination-promoting nuclease RpnA | VF |
| HV030_RS25310 () | 15640..15893 | - | 254 | Protein_19 | hypothetical protein | - |
| HV030_RS25315 () | 15883..16230 | - | 348 | WP_106108091.1 | hypothetical protein | - |
| HV030_RS25320 () | 16268..16438 | - | 171 | Protein_21 | LacI family DNA-binding transcriptional regulator | - |
| HV030_RS25325 () | 16510..17738 | + | 1229 | WP_148116659.1 | IS3 family transposase ISEc27 | Transposase |
| HV030_RS25330 () | 17751..18245 | - | 495 | Protein_23 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| HV030_RS25335 () | 18668..19090 | + | 423 | Protein_24 | peptidase M14 | - |
| HV030_RS25340 () | 19245..20261 | - | 1017 | WP_001407551.1 | IS5 family transposase IS5D | Transposase |
| HV030_RS25345 () | 21105..21971 | + | 867 | WP_071446652.1 | AAA family ATPase | - |
| HV030_RS25350 () | 21971..23002 | + | 1032 | WP_071446653.1 | ParB/RepB/Spo0J family partition protein | - |
| HV030_RS25355 () | 23002..23439 | + | 438 | WP_071446654.1 | hypothetical protein | - |
| HV030_RS25360 () | 23436..23759 | + | 324 | WP_071446655.1 | hypothetical protein | - |
| HV030_RS25365 () | 23802..25184 | + | 1383 | WP_071446656.1 | RES family NAD+ phosphorylase | - |
| HV030_RS25370 () | 25233..26507 | - | 1275 | WP_071687509.1 | Y-family DNA polymerase | - |
| HV030_RS25375 () | 26507..26929 | - | 423 | WP_045911947.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HV030_RS25380 () | 27470..28405 | + | 936 | WP_071446536.1 | DUF1281 domain-containing protein | - |
| HV030_RS25385 () | 28438..28785 | + | 348 | WP_071446535.1 | hypothetical protein | - |
| HV030_RS25390 () | 29162..29842 | + | 681 | WP_071446534.1 | DNA methylase | - |
| HV030_RS25395 () | 29842..30063 | + | 222 | WP_071446533.1 | hypothetical protein | - |
| HV030_RS25400 () | 30074..30493 | + | 420 | WP_071446532.1 | DUF1380 domain-containing protein | - |
| HV030_RS25405 () | 30549..30953 | + | 405 | WP_071446531.1 | DUF1380 family protein | - |
| HV030_RS25410 () | 31021..31788 | + | 768 | WP_071446530.1 | hypothetical protein | - |
| HV030_RS25415 () | 32206..32634 | + | 429 | WP_071446529.1 | antirestriction protein | - |
| HV030_RS25420 () | 32700..33134 | + | 435 | WP_071687506.1 | DUF1380 family protein | - |
| HV030_RS25425 () | 33370..33811 | + | 442 | Protein_42 | DNA polymerase III subunit theta | - |
| HV030_RS25430 () | 34365..34592 | + | 228 | WP_071687504.1 | hypothetical protein | - |
| HV030_RS25435 () | 34685..34915 | + | 231 | WP_071687503.1 | hypothetical protein | - |
| HV030_RS25440 () | 34967..36349 | + | 1383 | WP_071687502.1 | DUF3560 domain-containing protein | - |
| HV030_RS25445 () | 36396..36959 | + | 564 | WP_071687501.1 | class I SAM-dependent methyltransferase | - |
| HV030_RS25450 () | 37842..38402 | + | 561 | WP_071687500.1 | single-stranded DNA-binding protein | - |
| HV030_RS25455 () | 38454..38687 | + | 234 | WP_071687499.1 | DUF905 domain-containing protein | - |
| HV030_RS25460 () | 38756..40807 | + | 2052 | WP_127663647.1 | ParB/RepB/Spo0J family partition protein | - |
| HV030_RS25465 () | 40850..41284 | + | 435 | WP_114141097.1 | conjugation system SOS inhibitor PsiB | - |
| HV030_RS25470 () | 41281..42009 | + | 729 | WP_071687496.1 | plasmid SOS inhibition protein A | - |
| HV030_RS25475 () | 42006..42332 | + | 327 | WP_071698816.1 | theronine dehydrogenase | - |
| HV030_RS25480 () | 42443..42898 | + | 456 | WP_127663648.1 | hypothetical protein | - |
| HV030_RS25485 () | 42914..43216 | - | 303 | WP_127663649.1 | hypothetical protein | - |
| HV030_RS25490 () | 43351..43560 | + | 210 | WP_071687494.1 | hypothetical protein | - |
| HV030_RS25495 () | 43953..44483 | + | 531 | WP_071687493.1 | antirestriction protein | - |
| HV030_RS25500 () | 44494..44916 | - | 423 | WP_177247279.1 | hypothetical protein | VF |
| HV030_RS25505 () | 45418..45801 | + | 384 | WP_071687491.1 | relaxosome protein TraM | - |
| HV030_RS25510 () | 46308..46589 | + | 282 | WP_071687490.1 | conjugal transfer protein TraJ | - |
| HV030_RS25515 () | 46806..46973 | + | 168 | WP_164845037.1 | hypothetical protein | - |
| HV030_RS25520 () | 47079..47438 | + | 360 | WP_071687489.1 | type IV conjugative transfer system pilin TraA | - |
| HV030_RS25525 () | 47441..47746 | + | 306 | WP_071687511.1 | type IV conjugative transfer system protein TraL | - |
| HV030_RS25530 () | 47766..48329 | + | 564 | WP_071687488.1 | type IV conjugative transfer system protein TraE | - |
| HV030_RS25535 () | 48319..49059 | + | 741 | WP_071687487.1 | type-F conjugative transfer system secretin TraK | - |
| HV030_RS25540 () | 49046..50407 | + | 1362 | WP_071687486.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| HV030_RS25545 () | 50519..50743 | + | 225 | WP_071687485.1 | TraR/DksA C4-type zinc finger protein | - |
| HV030_RS25550 () | 50747..50932 | + | 186 | WP_071687484.1 | hypothetical protein | - |
| HV030_RS25555 () | 50916..51332 | + | 417 | WP_071687483.1 | hypothetical protein | - |
| HV030_RS25560 () | 51329..51775 | + | 447 | WP_071687482.1 | hypothetical protein | - |
| HV030_RS25565 () | 51793..52434 | + | 642 | WP_071687481.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HV030_RS25570 () | 52445..55036 | + | 2592 | WP_081365520.1 | type IV secretion system protein TraC | - |
| HV030_RS25575 () | 55033..55497 | + | 465 | WP_071687479.1 | type-F conjugative transfer system protein TrbI | - |
| HV030_RS25580 () | 55497..56132 | + | 636 | WP_071687478.1 | type-F conjugative transfer system protein TraW | - |
| HV030_RS25585 () | 56129..57124 | + | 996 | WP_071687477.1 | conjugal transfer pilus assembly protein TraU | - |
| HV030_RS25590 () | 57143..57757 | + | 615 | WP_071687476.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HV030_RS25595 () | 57754..59583 | + | 1830 | WP_071687475.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HV030_RS25600 () | 59580..60356 | + | 777 | WP_071446642.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HV030_RS25605 () | 60381..60992 | + | 612 | WP_071446641.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HV030_RS25610 () | 60992..62353 | + | 1362 | WP_071687474.1 | F-type conjugal transfer protein TraH | - |
| HV030_RS25615 () | 62355..65249 | + | 2895 | WP_071687473.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HV030_RS25620 () | 65259..65834 | + | 576 | WP_071687472.1 | conjugal transfer protein TraS | - |
| HV030_RS25625 () | 66018..66755 | + | 738 | WP_071687471.1 | complement resistance protein TraT | - |
| HV030_RS25630 () | 66906..68972 | + | 2067 | WP_127663653.1 | type IV conjugative transfer system coupling protein TraD | - |
| HV030_RS25635 () | 68972..74272 | + | 5301 | WP_071687469.1 | Multifunctional conjugation protein TraI | Relaxase |
| HV030_RS25640 () | 74291..74857 | + | 567 | WP_071687468.1 | DUF2726 domain-containing protein | - |
| HV030_RS25645 () | 74854..75582 | + | 729 | WP_071687467.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| HV030_RS25650 () | 75822..76172 | + | 351 | WP_071687465.1 | hypothetical protein | - |
| HV030_RS25655 () | 76169..76879 | + | 711 | WP_071687464.1 | hypothetical protein | - |
| HV030_RS25660 () | 76876..77184 | + | 309 | WP_071687463.1 | hypothetical protein | - |
| HV030_RS25665 () | 77283..77846 | + | 564 | WP_071687462.1 | Phospholipase D | VF |
| HV030_RS25670 () | 77977..78234 | + | 258 | WP_071687461.1 | replication regulatory protein RepA | - |
| HV030_RS25675 () | 78467..78544 | + | 78 | WP_071687510.1 | RepA leader peptide Tap | - |
| HV030_RS25680 () | 78537..79556 | + | 1020 | WP_071687460.1 | replication initiation protein | - |
| HV030_RS25685 () | 79572..79820 | - | 249 | WP_127663654.1 | hypothetical protein | - |
| HV030_RS25690 () | 80776..81063 | - | 288 | Protein_95 | Tn3 family transposase | - |
| HV030_RS25695 () | 81210..82133 | - | 924 | WP_001118639.1 | IS5 family transposase IS903B | Transposase |
| HV030_RS25700 () | 82282..82494 | - | 213 | WP_075261940.1 | KTSC domain-containing protein | - |
| HV030_RS25705 () | 82510..84270 | - | 1761 | WP_046051737.1 | DUF853 family protein | - |
| HV030_RS25710 () | 84260..85453 | - | 1194 | WP_046051738.1 | SIR2 family protein | - |
| HV030_RS25715 () | 85538..86104 | - | 567 | WP_046051739.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| HV030_RS25720 () | 86264..89278 | + | 3015 | WP_046051740.1 | Tn3 family transposase ISEc63 | Transposase |
| HV030_RS25725 () | 89314..89511 | - | 198 | Protein_102 | hypothetical protein | - |
| HV030_RS25730 () | 89599..90171 | - | 573 | WP_004099040.1 | hypothetical protein | - |
| HV030_RS25735 () | 90263..91231 | - | 969 | WP_004357645.1 | magnesium and cobalt transport protein CorA | - |
| HV030_RS25740 () | 91268..91825 | - | 558 | WP_003100847.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| HV030_RS25745 () | 91819..92190 | - | 372 | WP_003100853.1 | hypothetical protein | - |
| HV030_RS25750 () | 92187..92687 | - | 501 | WP_003100856.1 | hypothetical protein | - |
| HV030_RS25755 () | 92684..93010 | - | 327 | WP_003100858.1 | hypothetical protein | - |
| HV030_RS25760 () | 93265..93621 | - | 357 | WP_000215515.1 | cupin domain-containing protein | - |
| HV030_RS25765 () | 93611..94012 | - | 402 | WP_001293886.1 | DUF86 domain-containing protein | - |
| HV030_RS25770 () | 94009..94299 | - | 291 | WP_001247892.1 | nucleotidyltransferase | - |
| HV030_RS25775 () | 94458..97424 | + | 2967 | WP_015065644.1 | Tn3 family transposase TnpA_ISPa38 | Transposase |
| HV030_RS25780 () | 97503..98507 | + | 1005 | WP_000427623.1 | IS110 family transposase IS4321R | Transposase |
| HV030_RS25785 () | 98785..99105 | + | 321 | Protein_114 | conjugal transfer protein TrbF | - |
| HV030_RS25790 () | 99102..100151 | + | 1050 | WP_011191356.1 | P-type conjugative transfer protein TrbG | - |
| HV030_RS25795 () | 100148..101368 | + | 1221 | WP_011191355.1 | Type IV secretion system protein virB10 | VF |
| HV030_RS25800 () | 101371..101607 | + | 237 | WP_026227538.1 | DUF2274 domain-containing protein | - |
| HV030_RS25805 () | 101604..102500 | - | 897 | WP_011191354.1 | LysR family transcriptional regulator | - |
| HV030_RS25810 () | 102757..103290 | + | 534 | WP_004357616.1 | MarR family transcriptional regulator | - |
| HV030_RS25815 () | 103317..104276 | + | 960 | WP_004099025.1 | YeeE/YedE family protein | - |
| HV030_RS25820 () | 104315..104701 | - | 387 | WP_004099026.1 | hypothetical protein | - |
| HV030_RS25825 () | 104972..105460 | + | 489 | WP_004099027.1 | DUF417 family protein | - |
| HV030_RS25830 () | 105519..105701 | + | 183 | WP_004357657.1 | hypothetical protein | - |
| HV030_RS25835 () | 106018..106512 | + | 495 | WP_004099028.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| HV030_RS25840 () | 106909..107931 | - | 1023 | WP_004099029.1 | Zinc-type alcohol dehydrogenase-like protein | VF |
| HV030_RS25845 () | 107934..108527 | - | 594 | WP_025760400.1 | Peptide methionine sulfoxide reductase MsrA | VF |
| HV030_RS25850 () | 108530..109762 | - | 1233 | WP_004357650.1 | bifunctional alpha/beta hydrolase/OsmC family protein | - |
| HV030_RS25855 () | 109991..110866 | + | 876 | WP_011191349.1 | LysR family transcriptional regulator | - |
| HV030_RS25860 () | 111012..112043 | - | 1032 | WP_032425611.1 | IS630 family transposase ISEc33 | Transposase |
| HV030_RS25865 () | 112168..112611 | + | 444 | WP_004099035.1 | Peptide methionine sulfoxide reductase MsrB | VF |
| HV030_RS25870 () | 112613..113152 | + | 540 | WP_004099036.1 | Peptide methionine sulfoxide reductase MsrA 3 | VF |
| HV030_RS25875 () | 113285..113989 | + | 705 | WP_004099038.1 | glutathione S-transferase N-terminal domain-containing protein | - |
| HV030_RS25880 () | 113986..114954 | + | 969 | WP_004357645.1 | magnesium and cobalt transport protein CorA | - |
| HV030_RS25885 () | 115046..115618 | + | 573 | WP_004099040.1 | hypothetical protein | - |
| HV030_RS25890 () | 115706..116155 | + | 450 | WP_004099042.1 | hypothetical protein | - |
| HV030_RS25895 () | 116262..116663 | + | 402 | WP_004099044.1 | hypothetical protein | - |
| HV030_RS25900 () | 116694..117965 | - | 1272 | WP_004357638.1 | MFS transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|