MGE detailed information
MGE type: Conjugative plasmid MGE length: 148724 bp
Accession: NZ_CP056575 Location: 1..148724 Organism: Citrobacter freundii strain RHBSTW-00370 Replicon: plasmid pRHBSTW-00370_3
Accession: NZ_CP056575 Location: 1..148724 Organism: Citrobacter freundii strain RHBSTW-00370 Replicon: plasmid pRHBSTW-00370_3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV178_RS26150 () | 88..1119 | + | 1032 | WP_071446653.1 | ParB/RepB/Spo0J family partition protein | - |
| HV178_RS26155 () | 1119..1556 | + | 438 | WP_071446654.1 | hypothetical protein | - |
| HV178_RS26160 () | 1553..1876 | + | 324 | WP_071446655.1 | hypothetical protein | - |
| HV178_RS26165 () | 1919..3301 | + | 1383 | WP_071446656.1 | RES family NAD+ phosphorylase | - |
| HV178_RS26170 () | 3350..4624 | - | 1275 | WP_071687509.1 | Y-family DNA polymerase | - |
| HV178_RS26175 () | 4624..5070 | - | 447 | WP_071697883.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HV178_RS26180 () | 5124..5510 | + | 387 | WP_020956879.1 | IS66 family transposase ISSgsp1 | Transposase |
| HV178_RS26185 () | 5507..5854 | + | 348 | WP_004114612.1 | IS66 family transposase ISCfr14 | Transposase |
| HV178_RS26190 () | 5904..7442 | + | 1539 | WP_181553756.1 | IS66 family transposase ISKpn24 | Transposase |
| HV178_RS26195 () | 8034..8969 | + | 936 | WP_071446536.1 | DUF1281 domain-containing protein | - |
| HV178_RS26200 () | 9002..9349 | + | 348 | WP_071446535.1 | hypothetical protein | - |
| HV178_RS26205 () | 9726..10406 | + | 681 | WP_071446534.1 | DNA methylase | - |
| HV178_RS26210 () | 10406..10627 | + | 222 | WP_071446533.1 | hypothetical protein | - |
| HV178_RS26215 () | 10638..11057 | + | 420 | WP_071446532.1 | DUF1380 domain-containing protein | - |
| HV178_RS26220 () | 11113..11517 | + | 405 | WP_071446531.1 | DUF1380 family protein | - |
| HV178_RS26225 () | 11585..12352 | + | 768 | WP_071446530.1 | hypothetical protein | - |
| HV178_RS26230 () | 12770..13198 | + | 429 | WP_071446529.1 | antirestriction protein | - |
| HV178_RS26235 () | 13264..13698 | + | 435 | WP_071698389.1 | DUF1380 family protein | - |
| HV178_RS26240 () | 13934..14375 | + | 442 | Protein_19 | DNA polymerase III subunit theta | - |
| HV178_RS26245 () | 14929..15156 | + | 228 | WP_071687504.1 | hypothetical protein | - |
| HV178_RS26250 () | 15249..15479 | + | 231 | WP_071687503.1 | hypothetical protein | - |
| HV178_RS26255 () | 15531..16913 | + | 1383 | WP_071687502.1 | DUF3560 domain-containing protein | - |
| HV178_RS26260 () | 16960..17523 | + | 564 | WP_071687501.1 | class I SAM-dependent methyltransferase | - |
| HV178_RS26265 () | 18406..18966 | + | 561 | WP_071687500.1 | single-stranded DNA-binding protein | - |
| HV178_RS26270 () | 19018..19251 | + | 234 | WP_071687499.1 | DUF905 domain-containing protein | - |
| HV178_RS26275 () | 19320..21370 | + | 2051 | Protein_26 | ParB/RepB/Spo0J family partition protein | - |
| HV178_RS26280 () | 21413..21847 | + | 435 | WP_114141097.1 | conjugation system SOS inhibitor PsiB | - |
| HV178_RS26285 () | 21844..22572 | + | 729 | WP_071687496.1 | plasmid SOS inhibition protein A | - |
| HV178_RS26290 () | 22569..22895 | + | 327 | WP_071698816.1 | theronine dehydrogenase | - |
| HV178_RS26295 () | 23006..23461 | + | 456 | WP_131341794.1 | hypothetical protein | - |
| HV178_RS26300 () | 23477..23758 | - | 282 | WP_127702263.1 | hypothetical protein | - |
| HV178_RS26305 () | 23914..24123 | + | 210 | WP_071687494.1 | hypothetical protein | - |
| HV178_RS26310 () | 24516..25046 | + | 531 | WP_071687493.1 | antirestriction protein | - |
| HV178_RS26315 () | 25057..25479 | - | 423 | WP_177247279.1 | hypothetical protein | VF |
| HV178_RS26320 () | 25981..26364 | + | 384 | WP_071687491.1 | relaxosome protein TraM | - |
| HV178_RS26325 () | 26871..27152 | + | 282 | WP_071687490.1 | conjugal transfer protein TraJ | - |
| HV178_RS26330 () | 27641..28000 | + | 360 | WP_071687489.1 | type IV conjugative transfer system pilin TraA | - |
| HV178_RS26335 () | 28003..28308 | + | 306 | WP_071687511.1 | type IV conjugative transfer system protein TraL | - |
| HV178_RS26340 () | 28328..28891 | + | 564 | WP_071687488.1 | type IV conjugative transfer system protein TraE | - |
| HV178_RS26345 () | 28881..29621 | + | 741 | WP_071687487.1 | type-F conjugative transfer system secretin TraK | - |
| HV178_RS26350 () | 29608..30969 | + | 1362 | WP_071687486.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| HV178_RS26355 () | 31081..31305 | + | 225 | WP_071687485.1 | TraR/DksA C4-type zinc finger protein | - |
| HV178_RS26360 () | 31309..31494 | + | 186 | WP_071687484.1 | hypothetical protein | - |
| HV178_RS26365 () | 31478..31894 | + | 417 | WP_071687483.1 | hypothetical protein | - |
| HV178_RS26370 () | 31891..32337 | + | 447 | WP_071687482.1 | hypothetical protein | - |
| HV178_RS26375 () | 32355..32996 | + | 642 | WP_071687481.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HV178_RS26380 () | 33007..35598 | + | 2592 | WP_081365520.1 | type IV secretion system protein TraC | - |
| HV178_RS26385 () | 35595..36059 | + | 465 | WP_181553757.1 | type-F conjugative transfer system protein TrbI | - |
| HV178_RS26390 () | 36059..36694 | + | 636 | WP_071687478.1 | type-F conjugative transfer system protein TraW | - |
| HV178_RS26395 () | 36691..37686 | + | 996 | WP_071687477.1 | conjugal transfer pilus assembly protein TraU | - |
| HV178_RS26400 () | 37705..38319 | + | 615 | WP_071687476.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HV178_RS26405 () | 38316..40145 | + | 1830 | WP_181553758.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HV178_RS26410 () | 40142..40918 | + | 777 | WP_181553759.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HV178_RS26415 () | 40943..41554 | + | 612 | WP_071446641.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HV178_RS26420 () | 41554..42915 | + | 1362 | WP_071698378.1 | F-type conjugal transfer protein TraH | - |
| HV178_RS26425 () | 42917..45811 | + | 2895 | WP_071687473.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HV178_RS26430 () | 45821..46396 | + | 576 | WP_071687472.1 | conjugal transfer protein TraS | - |
| HV178_RS26435 () | 46580..47317 | + | 738 | WP_071687471.1 | complement resistance protein TraT | - |
| HV178_RS26440 () | 47468..49534 | + | 2067 | WP_071698779.1 | type IV conjugative transfer system coupling protein TraD | - |
| HV178_RS26445 () | 49534..54834 | + | 5301 | WP_071698778.1 | Multifunctional conjugation protein TraI | Relaxase |
| HV178_RS26450 () | 54853..55419 | + | 567 | WP_071687468.1 | DUF2726 domain-containing protein | - |
| HV178_RS26455 () | 55416..56144 | + | 729 | WP_071687467.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| HV178_RS26460 () | 56384..56734 | + | 351 | WP_071687465.1 | hypothetical protein | - |
| HV178_RS26465 () | 56731..57441 | + | 711 | WP_071687464.1 | hypothetical protein | - |
| HV178_RS26470 () | 57438..57746 | + | 309 | WP_071687463.1 | hypothetical protein | - |
| HV178_RS26475 () | 57845..58408 | + | 564 | WP_071687462.1 | Phospholipase D | VF |
| HV178_RS26480 () | 58539..58796 | + | 258 | WP_071687461.1 | replication regulatory protein RepA | - |
| HV178_RS26485 () | 59029..59106 | + | 78 | WP_071687510.1 | RepA leader peptide Tap | - |
| HV178_RS26490 () | 59099..60118 | + | 1020 | WP_071687460.1 | replication initiation protein | - |
| HV178_RS26495 () | 60134..60382 | - | 249 | WP_127663654.1 | hypothetical protein | - |
| HV178_RS26500 () | 61229..61926 | - | 698 | Protein_71 | IS1 family transposase IS1G | Transposase |
| HV178_RS26505 () | 62233..64608 | - | 2376 | WP_075335825.1 | DEAD/DEAH box helicase family protein | - |
| HV178_RS26510 () | 64601..66544 | - | 1944 | WP_032490861.1 | site-specific DNA-methyltransferase | - |
| HV178_RS26515 () | 66647..67195 | - | 549 | WP_025760443.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| HV178_RS26520 () | 67359..70367 | + | 3009 | WP_012817690.1 | Tn3 family transposase ISEc63 | Transposase |
| HV178_RS26525 () | 70972..71301 | + | 330 | WP_000493286.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HV178_RS26530 () | 71282..71563 | + | 282 | WP_000780222.1 | helix-turn-helix transcriptional regulator | - |
| HV178_RS26535 () | 71841..72821 | + | 981 | WP_000019450.1 | IS5 family transposase ISKpn26 | Transposase |
| HV178_RS26540 () | 73138..73638 | - | 501 | WP_001752509.1 | non-heme ferritin-like protein | - |
| HV178_RS26545 () | 73965..74669 | - | 705 | WP_181553760.1 | IS6 family transposase IS26 | Transposase |
| HV178_RS26550 () | 74754..75311 | - | 558 | WP_001162010.1 | Tn3 family transposase TnpR_TnAs2 | Transposase |
| HV178_RS26555 () | 75441..75653 | - | 213 | WP_000993245.1 | DUF3330 domain-containing protein | - |
| HV178_RS26560 () | 75719..75955 | - | 237 | WP_001087807.1 | broad-spectrum mercury transporter MerE | - |
| HV178_RS26565 () | 75952..76317 | - | 366 | WP_001277466.1 | mercury resistance co-regulator MerD | - |
| HV178_RS26570 () | 76335..78020 | - | 1686 | WP_000209296.1 | mercury(II) reductase | - |
| HV178_RS26575 () | 78059..78484 | - | 426 | WP_000522996.1 | organomercurial transporter MerC | - |
| HV178_RS26580 () | 78512..78787 | - | 276 | WP_000732275.1 | mercury resistance system periplasmic binding protein MerP | - |
| HV178_RS26585 () | 78803..79168 | - | 366 | WP_001294656.1 | mercuric ion transporter MerT | - |
| HV178_RS26590 () | 79240..79695 | + | 456 | WP_001166628.1 | IS607 family transposase ISChh1 | Transposase |
| HV178_RS26595 () | 79715..79783 | - | 69 | Protein_90 | hypothetical protein | - |
| HV178_RS26600 () | 80023..80397 | - | 375 | WP_017901448.1 | hypothetical protein | - |
| HV178_RS26605 () | 80397..81029 | - | 633 | WP_017901447.1 | ParA family protein | - |
| HV178_RS26610 () | 82084..82839 | - | 756 | WP_001568031.1 | replication initiation protein RepE | - |
| HV178_RS26615 () | 83571..83975 | + | 405 | WP_044715319.1 | IS66 family transposase ISKpn24 | Transposase |
| HV178_RS26620 () | 83972..84319 | + | 348 | WP_044715322.1 | IS66 family transposase ISKpn24 | Transposase |
| HV178_RS26625 () | 84368..85906 | + | 1539 | WP_159188266.1 | IS66 family transposase ISKpn24 | Transposase |
| HV178_RS26630 () | 85944..86456 | + | 513 | Protein_97 | IS3 family transposase ISEc27 | Transposase |
| HV178_RS26635 () | 86659..87267 | - | 609 | WP_022652299.1 | TetR/AcrR family transcriptional regulator | - |
| HV178_RS26640 () | 87644..89455 | + | 1812 | WP_181553754.1 | beta-glucuronidase | - |
| HV178_RS26645 () | 89452..90825 | + | 1374 | WP_022652297.1 | glucuronide transporter | - |
| HV178_RS26650 () | 90874..92139 | + | 1266 | WP_022652296.1 | glucuronide uptake porin UidC | - |
| HV178_RS26655 () | 92441..93625 | + | 1185 | WP_022652295.1 | mannonate dehydratase | - |
| HV178_RS26660 () | 93732..95201 | + | 1470 | WP_022652294.1 | fructuronate reductase | - |
| HV178_RS26665 () | 95221..96651 | + | 1431 | WP_022652293.1 | glucuronate isomerase | - |
| HV178_RS26670 () | 96869..97657 | + | 789 | WP_032430963.1 | Uxu operon transcriptional regulator | - |
| HV178_RS26675 () | 97828..98505 | - | 678 | Protein_106 | IS66 family transposase ISKpn24 | Transposase |
| HV178_RS26680 () | 98540..101437 | - | 2898 | WP_022652290.1 | Tn3 family transposase TnpA_Tn5403 | Transposase |
| HV178_RS26685 () | 101532..102137 | + | 606 | WP_000509966.1 | Tn3 family transposase TnpR_Tn5403 | Transposase |
| HV178_RS26695 () | 103960..104643 | - | 684 | WP_071698035.1 | hypothetical protein | - |
| HV178_RS26700 () | 104900..105139 | + | 240 | WP_000534857.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| HV178_RS26705 () | 105139..105426 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| HV178_RS26710 () | 105709..105933 | + | 225 | Protein_113 | hypothetical protein | - |
| HV178_RS26715 () | 106228..107244 | + | 1017 | WP_181500132.1 | IS5 family transposase IS5D | Transposase |
| HV178_RS26720 () | 107385..107579 | + | 195 | Protein_115 | endonuclease | - |
| HV178_RS26725 () | 107758..108390 | + | 633 | WP_022652286.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| HV178_RS26730 () | 108444..108644 | + | 201 | WP_040219232.1 | hypothetical protein | - |
| HV178_RS26735 () | 108791..109741 | + | 951 | WP_058654545.1 | Recombination-promoting nuclease RpnA | VF |
| HV178_RS26740 () | 109738..110028 | - | 291 | WP_088169158.1 | hypothetical protein | - |
| HV178_RS26745 () | 110116..110499 | + | 384 | WP_001201739.1 | IS66 family insertion sequence hypothetical protein | - |
| HV178_RS26750 () | 110496..110843 | + | 348 | WP_000609174.1 | IS66 family transposase ISCfr14 | Transposase |
| HV178_RS26755 () | 110893..112428 | + | 1536 | WP_001000409.1 | IS66 family transposase ISSgsp1 | Transposase |
| HV178_RS26760 () | 112471..112794 | - | 324 | Protein_123 | DUF2913 family protein | - |
| HV178_RS26765 () | 112791..113123 | - | 333 | Protein_124 | hypothetical protein | - |
| HV178_RS26770 () | 113189..114169 | + | 981 | WP_000019450.1 | IS5 family transposase ISKpn26 | Transposase |
| HV178_RS26775 () | 114318..115523 | - | 1206 | Protein_126 | Tn3 family transposase TnpA_TnEc1 | Transposase |
| HV178_RS26780 () | 115691..116347 | + | 657 | WP_181553755.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| HV178_RS26785 () | 116393..117373 | + | 981 | WP_000019450.1 | IS5 family transposase ISKpn26 | Transposase |
| HV178_RS26790 () | 118274..118924 | + | 651 | WP_001567322.1 | CPBP family intramembrane metalloprotease | - |
| HV178_RS26795 () | 118927..120180 | + | 1254 | WP_001567323.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| HV178_RS26800 () | 120180..122357 | + | 2178 | WP_001567324.1 | peptidase domain-containing ABC transporter | - |
| HV178_RS26805 () | 122448..123470 | + | 1023 | WP_001567660.1 | IS110 family transposase ISSm1 | Transposase |
| HV178_RS26810 () | 124140..125171 | + | 1032 | WP_008322245.1 | LacI family transcriptional regulator | - |
| HV178_RS26815 () | 125458..126411 | + | 954 | WP_008322243.1 | ABC transporter substrate-binding protein | - |
| HV178_RS26820 () | 126476..128008 | + | 1533 | WP_008322240.1 | Ribose import ATP-binding protein RbsA | VF |
| HV178_RS26825 () | 127995..129014 | + | 1020 | WP_004113181.1 | ribose ABC transporter permease | - |
| HV178_RS26830 () | 129092..130462 | + | 1371 | WP_008322237.1 | hypothetical protein | - |
| HV178_RS26835 () | 130459..131379 | + | 921 | WP_008322235.1 | carbohydrate kinase | - |
| HV178_RS26840 () | 131562..131731 | - | 170 | Protein_139 | DUF596 domain-containing protein | - |
| HV178_RS26845 () | 131925..132341 | - | 417 | WP_008322233.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| HV178_RS26850 () | 132338..132568 | - | 231 | WP_001261276.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| HV178_RS26855 () | 132821..133843 | - | 1023 | WP_008322227.1 | helicase UvrD | - |
| HV178_RS26860 () | 133828..135390 | - | 1563 | WP_008322224.1 | AAA family ATPase | - |
| HV178_RS26865 () | 135464..135880 | - | 417 | WP_008322222.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| HV178_RS26870 () | 135877..136107 | - | 231 | WP_008322219.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| HV178_RS26875 () | 136877..137095 | + | 219 | WP_032934863.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| HV178_RS26880 () | 137097..137402 | + | 306 | WP_008322213.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| HV178_RS26885 () | 137404..137718 | + | 315 | WP_008322211.1 | hypothetical protein | - |
| HV178_RS26890 () | 137708..138499 | + | 792 | WP_008322208.1 | site-specific integrase | - |
| HV178_RS26895 () | 138698..140065 | - | 1368 | WP_008322207.1 | GntP family transporter | - |
| HV178_RS26900 () | 140151..140927 | - | 777 | WP_008322204.1 | HPr family phosphocarrier protein | - |
| HV178_RS26905 () | 140932..141570 | - | 639 | WP_008322203.1 | aldolase | - |
| HV178_RS26910 () | 141567..142829 | - | 1263 | WP_008322201.1 | four-carbon acid sugar kinase family protein | - |
| HV178_RS26915 () | 142826..143734 | - | 909 | WP_008322199.1 | NAD(P)-dependent oxidoreductase | - |
| HV178_RS26920 () | 143928..144722 | + | 795 | WP_008322197.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| HV178_RS26925 () | 144809..145747 | - | 939 | WP_008322195.1 | Recombination-promoting nuclease RpnA | VF |
| HV178_RS26930 () | 145884..146127 | - | 244 | Protein_157 | hypothetical protein | - |
| HV178_RS26935 () | 146119..147099 | + | 981 | WP_000019450.1 | IS5 family transposase ISKpn26 | Transposase |
| HV178_RS26940 () | 147321..147539 | - | 219 | WP_071446651.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|