MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 133001 bp
Accession: NZ_CP056573 Location: 1100823..1233823 Organism: Citrobacter freundii strain RHBSTW-00370 Replicon: chromosome
Accession: NZ_CP056573 Location: 1100823..1233823 Organism: Citrobacter freundii strain RHBSTW-00370 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV178_RS05295 () | 1096897..1097412 | + | 516 | WP_003037312.1 | S-ribosylhomocysteine lyase | - |
| HV178_RS05300 () | 1097759..1099126 | + | 1368 | WP_048232664.1 | carbohydrate porin | - |
| HV178_RS05305 () | 1099175..1100713 | - | 1539 | WP_003037306.1 | multidrug efflux MFS transporter permease subunit EmrB | - |
| HV178_RS05310 () | 1100730..1101902 | - | 1173 | WP_003037303.1 | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | - |
| HV178_RS05315 () | 1102033..1102563 | - | 531 | WP_003037300.1 | Transcriptional repressor MprA | VF |
| HV178_RS05320 () | 1102654..1102989 | - | 336 | WP_003037297.1 | L-valine transporter subunit YgaH | - |
| HV178_RS05325 () | 1102979..1103716 | - | 738 | WP_016150871.1 | AzlC family ABC transporter permease | - |
| HV178_RS05330 () | 1103839..1105023 | - | 1185 | WP_044713351.1 | MFS transporter | - |
| HV178_RS05335 () | 1105214..1106209 | - | 996 | WP_043017315.1 | glycine betaine/L-proline ABC transporter substrate-binding protein ProX | - |
| HV178_RS05340 () | 1106278..1107342 | - | 1065 | WP_003037285.1 | glycine betaine/L-proline ABC transporter permease ProW | - |
| HV178_RS05345 () | 1107335..1108537 | - | 1203 | WP_003037282.1 | Glycine betaine/proline betaine transport system ATP-binding protein ProV | VF |
| HV178_RS05350 () | 1108892..1109851 | - | 960 | WP_181553675.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| HV178_RS05355 () | 1109862..1112006 | - | 2145 | WP_048232661.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| HV178_RS05360 () | 1111979..1112389 | - | 411 | WP_003037273.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| HV178_RS05365 () | 1112386..1112631 | - | 246 | WP_048232659.1 | glutaredoxin-like protein NrdH | - |
| HV178_RS05370 () | 1112907..1113338 | - | 432 | WP_003839686.1 | carboxymuconolactone decarboxylase family protein | - |
| HV178_RS05375 () | 1113429..1114763 | + | 1335 | WP_048217216.1 | PLP-dependent aminotransferase family protein | - |
| HV178_RS05380 () | 1115012..1115362 | + | 351 | WP_044699663.1 | DUF2002 family protein | - |
| HV178_RS05385 () | 1115399..1115848 | - | 450 | WP_003037259.1 | L-alanine exporter AlaE | - |
| HV178_RS05390 () | 1116406..1116807 | + | 402 | WP_003839690.1 | DNA-binding protein StpA | - |
| HV178_RS05395 () | 1116844..1117023 | - | 180 | WP_003037253.1 | hypothetical protein | - |
| HV178_RS05400 () | 1117114..1117641 | - | 528 | WP_016150867.1 | rhodanese family protein | - |
| HV178_RS05405 () | 1117651..1117950 | - | 300 | WP_003037247.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| HV178_RS05410 () | 1118136..1118294 | + | 159 | WP_003037242.1 | YqaE/Pmp3 family membrane protein | - |
| HV178_RS05415 () | 1118390..1118839 | + | 450 | WP_003037241.1 | peptidoglycan-binding protein LysM | - |
| HV178_RS05420 () | 1118852..1119538 | - | 687 | WP_016150866.1 | DNA-binding transcriptional regulator CsiR | - |
| HV178_RS05425 () | 1119584..1120984 | - | 1401 | WP_003839698.1 | GABA permease | - |
| HV178_RS05430 () | 1121127..1122410 | - | 1284 | WP_048232657.1 | 4-aminobutyrate aminotransferase GabT | VF |
| HV178_RS05435 () | 1122436..1123884 | - | 1449 | WP_048232656.1 | NADP-dependent succinate-semialdehyde dehydrogenase | - |
| HV178_RS05440 () | 1123908..1125176 | - | 1269 | WP_048232655.1 | L-2-hydroxyglutarate oxidase | - |
| HV178_RS05445 () | 1125196..1126173 | - | 978 | WP_003839704.1 | carbon starvation induced protein CsiD | - |
| HV178_RS05450 () | 1126413..1127126 | - | 714 | WP_003037218.1 | Protein SapB | VF |
| HV178_RS05455 () | 1127158..1128393 | - | 1236 | WP_003037215.1 | MFS transporter | - |
| HV178_RS05460 () | 1128405..1129229 | - | 825 | WP_003037212.1 | hypothetical protein | - |
| HV178_RS05465 () | 1129564..1131738 | + | 2175 | WP_048232653.1 | Catabolite repressor/activator | VF |
| HV178_RS05470 () | 1131791..1132396 | - | 606 | WP_048232651.1 | short chain dehydrogenase | - |
| HV178_RS05475 () | 1132495..1133385 | + | 891 | WP_003037204.1 | HTH-type transcriptional regulator DmlR | VF |
| HV178_RS05480 () | 1133456..1134970 | - | 1515 | WP_003846009.1 | tripartite tricarboxylate transporter permease | - |
| HV178_RS05485 () | 1134981..1135415 | - | 435 | WP_008321484.1 | tripartite tricarboxylate transporter TctB family protein | - |
| HV178_RS05490 () | 1135430..1136407 | - | 978 | WP_003846007.1 | tripartite tricarboxylate transporter substrate binding protein | - |
| HV178_RS05495 () | 1136561..1137235 | + | 675 | WP_003846006.1 | Transcriptional regulatory protein tctD | VF |
| HV178_RS05500 () | 1137222..1138673 | + | 1452 | WP_003846005.1 | sensor histidine kinase | - |
| HV178_RS05505 () | 1138666..1139748 | - | 1083 | WP_048232650.1 | fimbrial protein | - |
| HV178_RS05510 () | 1139759..1142317 | - | 2559 | WP_048217222.1 | Outer membrane usher protein FimD | VF |
| HV178_RS05515 () | 1142331..1143002 | - | 672 | WP_032938091.1 | Chaperone protein FimC | VF |
| HV178_RS05520 () | 1143057..1143644 | - | 588 | WP_048217223.1 | S-fimbrial protein subunit SfaA | VF |
| HV178_RS05525 () | 1144684..1146099 | + | 1416 | WP_048232648.1 | UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase | VF |
| HV178_RS05530 () | 1146089..1147375 | + | 1287 | WP_003839728.1 | outer membrane beta-barrel protein | - |
| HV178_RS05535 () | 1147377..1147934 | + | 558 | WP_003037180.1 | hypothetical protein | VF |
| HV178_RS05540 () | 1147937..1150066 | + | 2130 | WP_048232647.1 | tyrosine-protein kinase domain-containing protein | - |
| HV178_RS05545 () | 1150063..1151274 | + | 1212 | WP_032938083.1 | oligosaccharide flippase family protein | - |
| HV178_RS05550 () | 1151271..1152641 | + | 1371 | WP_048232645.1 | hypothetical protein | - |
| HV178_RS05555 () | 1152646..1153635 | + | 990 | WP_032938081.1 | glycosyltransferase | - |
| HV178_RS05560 () | 1153650..1154861 | + | 1212 | WP_044699634.1 | glycosyltransferase family 4 protein | - |
| HV178_RS05565 () | 1154863..1155975 | + | 1113 | WP_032938077.1 | glycosyltransferase family 4 protein | - |
| HV178_RS05570 () | 1155978..1156385 | + | 408 | WP_032938074.1 | hypothetical protein | - |
| HV178_RS05575 () | 1156416..1157807 | + | 1392 | WP_048232643.1 | DUF4832 domain-containing protein | - |
| HV178_RS05580 () | 1157854..1158870 | - | 1017 | WP_044699629.1 | UDP-glucose 4-epimerase | VF |
| HV178_RS05585 () | 1158938..1159876 | - | 939 | WP_044713272.1 | hypothetical protein | - |
| HV178_RS05590 () | 1160092..1160727 | - | 636 | WP_003037157.1 | carbonic anhydrase | - |
| HV178_RS05595 () | 1160986..1161495 | + | 510 | WP_003839750.1 | hypothetical protein | - |
| HV178_RS05600 () | 1161574..1163322 | - | 1749 | WP_044713271.1 | Regulatory protein AtoC | VF |
| HV178_RS05605 () | 1163704..1164918 | + | 1215 | WP_008321489.1 | diaminopropionate ammonia-lyase | - |
| HV178_RS05610 () | 1164951..1166135 | + | 1185 | WP_003839756.1 | YgeY family selenium metabolism-linked hydrolase | - |
| HV178_RS05615 () | 1166203..1167795 | + | 1593 | WP_003839758.1 | D-aminoacylase | VF |
| HV178_RS05620 () | 1167874..1169160 | + | 1287 | WP_003839760.1 | MFS transporter | - |
| HV178_RS05625 () | 1169630..1170244 | + | 615 | WP_003839762.1 | acid-sensing system DNA-binding response regulator EvgA | - |
| HV178_RS05630 () | 1170249..1173491 | + | 3243 | WP_048232642.1 | Sensor protein EvgS | VF |
| HV178_RS05635 () | 1173566..1174198 | - | 633 | WP_044713267.1 | YfdX family protein | - |
| HV178_RS05640 () | 1174480..1175076 | + | 597 | WP_032949861.1 | DUF308 domain-containing protein | - |
| HV178_RS05645 () | 1175076..1175423 | + | 348 | WP_008321512.1 | ABC transporter substrate-binding protein | - |
| HV178_RS05650 () | 1175631..1178747 | - | 3117 | WP_003839771.1 | Multidrug resistance protein MdtF | VF |
| HV178_RS05655 () | 1178776..1179930 | - | 1155 | WP_003839773.1 | Multidrug resistance protein MdtE | VF |
| HV178_RS05660 () | 1180211..1180777 | - | 567 | WP_003839775.1 | Slp family lipoprotein | - |
| HV178_RS05665 () | 1181022..1181876 | - | 855 | WP_003839777.1 | MurR/RpiR family transcriptional regulator | - |
| HV178_RS05670 () | 1182170..1183675 | + | 1506 | WP_044713261.1 | CoA-acylating methylmalonate-semialdehyde dehydrogenase | - |
| HV178_RS05675 () | 1183687..1185612 | + | 1926 | WP_181553676.1 | 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) | - |
| HV178_RS05680 () | 1185957..1186943 | + | 987 | WP_003845960.1 | inositol 2-dehydrogenase | - |
| HV178_RS05685 () | 1186982..1187911 | + | 930 | WP_032949851.1 | sugar ABC transporter substrate-binding protein | - |
| HV178_RS05690 () | 1187963..1189510 | + | 1548 | WP_003839789.1 | Ribose import ATP-binding protein RbsA | VF |
| HV178_RS05695 () | 1189522..1190550 | + | 1029 | WP_003839791.1 | ABC transporter permease | - |
| HV178_RS05700 () | 1190559..1191692 | + | 1134 | WP_048232637.1 | Gfo/Idh/MocA family oxidoreductase | - |
| HV178_RS05705 () | 1191705..1193609 | + | 1905 | WP_048232635.1 | 5-dehydro-2-deoxygluconokinase | - |
| HV178_RS05710 () | 1193624..1194514 | + | 891 | WP_048232633.1 | myo-inosose-2 dehydratase | - |
| HV178_RS05715 () | 1194524..1195342 | + | 819 | WP_048232631.1 | 5-deoxy-glucuronate isomerase | - |
| HV178_RS05720 () | 1195557..1195922 | - | 366 | Protein_1118 | AIDA-I autotransporter | VF |
| HV178_RS05725 () | 1195930..1196091 | - | 162 | Protein_1119 | integrase arm-type DNA-binding domain-containing protein | - |
| HV178_RS05730 () | 1196598..1196894 | - | 297 | WP_032642920.1 | TA system toxin CbtA family protein | Toxin Detail |
| HV178_RS05735 () | 1196954..1197277 | - | 324 | WP_032642918.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| HV178_RS05740 () | 1197299..1197520 | - | 222 | WP_032642916.1 | DUF987 domain-containing protein | - |
| HV178_RS05745 () | 1197529..1197831 | - | 303 | Protein_1123 | hypothetical protein | - |
| HV178_RS05750 () | 1197913..1198317 | + | 405 | WP_000839182.1 | IS66 family transposase ISKpn24 | Transposase |
| HV178_RS05755 () | 1198314..1198661 | + | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| HV178_RS05760 () | 1198710..1200248 | + | 1539 | WP_008786790.1 | IS66 family transposase ISKpn24 | Transposase |
| HV178_RS05765 () | 1200282..1200461 | - | 180 | WP_181553744.1 | hypothetical protein | - |
| HV178_RS05770 () | 1200494..1201315 | - | 822 | WP_181553735.1 | DUF945 domain-containing protein | - |
| HV178_RS05775 () | 1201536..1201976 | - | 441 | WP_135695985.1 | NirD/YgiW/YdeI family stress tolerance protein | - |
| HV178_RS05780 () | 1202137..1203279 | - | 1143 | WP_029602872.1 | nickel/cobalt efflux protein RcnA | - |
| HV178_RS05785 () | 1203292..1203561 | - | 270 | WP_009653703.1 | metal-sensing transcriptional repressor | - |
| HV178_RS05790 () | 1203665..1204963 | - | 1299 | WP_029602873.1 | nickel resistance membrane nickel efflux protein NirA | - |
| HV178_RS05795 () | 1205199..1205957 | - | 759 | WP_029602874.1 | hypothetical protein | - |
| HV178_RS05800 () | 1206011..1206931 | - | 921 | WP_029602875.1 | hypothetical protein | - |
| HV178_RS05805 () | 1206995..1207366 | - | 372 | WP_029602876.1 | hypothetical protein | - |
| HV178_RS05810 () | 1207507..1208196 | - | 690 | WP_029602877.1 | hypothetical protein | - |
| HV178_RS05815 () | 1208210..1208947 | - | 738 | WP_009654087.1 | HupE/UreJ family protein | - |
| HV178_RS05820 () | 1208992..1209357 | - | 366 | WP_029602878.1 | hypothetical protein | - |
| HV178_RS05825 () | 1209701..1210063 | - | 363 | WP_032642906.1 | hypothetical protein | - |
| HV178_RS05830 () | 1210099..1210539 | - | 441 | WP_032642904.1 | hypothetical protein | - |
| HV178_RS05835 () | 1210548..1211234 | - | 687 | WP_032642901.1 | WYL domain-containing protein | - |
| HV178_RS05840 () | 1211254..1211991 | - | 738 | WP_032642899.1 | DUF3944 domain-containing protein | - |
| HV178_RS05845 () | 1212133..1212711 | - | 579 | WP_032642897.1 | hypothetical protein | - |
| HV178_RS05850 () | 1213195..1213827 | + | 633 | WP_071957397.1 | inovirus Gp2 family protein | - |
| HV178_RS05855 () | 1213963..1215402 | - | 1440 | WP_045370402.1 | DUF3987 domain-containing protein | - |
| HV178_RS05860 () | 1215495..1215710 | - | 216 | WP_032642895.1 | AlpA family phage regulatory protein | - |
| HV178_RS05865 () | 1215939..1217120 | + | 1182 | WP_049121588.1 | hypothetical protein | - |
| HV178_RS05870 () | 1217430..1218185 | - | 756 | WP_127348427.1 | hypothetical protein | - |
| HV178_RS05875 () | 1218577..1221201 | - | 2625 | WP_032642889.1 | AAA family ATPase | - |
| HV178_RS05880 () | 1221676..1222761 | + | 1086 | WP_032949838.1 | SIR2 family protein | - |
| HV178_RS05885 () | 1222763..1224508 | + | 1746 | WP_032642885.1 | ATP-binding protein | - |
| HV178_RS05890 () | 1224835..1225872 | - | 1038 | WP_032642883.1 | restriction endonuclease | - |
| HV178_RS05895 () | 1226368..1227476 | + | 1109 | WP_101677551.1 | IS3 family transposase ISBcen15 | Transposase |
| HV178_RS05900 () | 1227584..1228825 | - | 1242 | WP_032642877.1 | Prophage integrase IntA ; Integrase | Integrase |
| HV178_RS05910 () | 1229466..1230629 | - | 1164 | WP_085951585.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| HV178_RS05915 () | 1230637..1232823 | - | 2187 | WP_048232581.1 | type I secretion system permease/ATPase | - |
| HV178_RS05920 () | 1232820..1234229 | - | 1410 | WP_003845860.1 | TolC family outer membrane protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|