MGE detailed information
MGE type: Conjugative plasmid MGE length: 86646 bp
Accession: NZ_CP054413 Location: 1..86646 Organism: Escherichia coli strain SCU-204 Replicon: plasmid pSCU-204-2
Accession: NZ_CP054413 Location: 1..86646 Organism: Escherichia coli strain SCU-204 Replicon: plasmid pSCU-204-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ42_RS25135 (1) | 1..1032 | + | 1032 | WP_000907863.1 | plasmid replication initiator RepA | - |
| HHJ42_RS25140 (2101) | 2101..2610 | - | 510 | WP_000045394.1 | hypothetical protein | - |
| HHJ42_RS25145 (2666) | 2666..3268 | - | 603 | WP_000517692.1 | ProQ/FINO family protein | - |
| HHJ42_RS25150 (3622) | 3622..4968 | + | 1347 | WP_001132033.1 | protein YagA | - |
| HHJ42_RS25155 (5247) | 5247..7127 | + | 1881 | WP_001283344.1 | colicin Ia central receptor-binding domain-containing protein | - |
| HHJ42_RS25160 (7149) | 7149..7484 | - | 336 | WP_001080734.1 | colicin 1A immunity protein | - |
| HHJ42_RS25165 (7613) | 7613..7960 | + | 348 | WP_000142451.1 | DUF6404 family protein | - |
| HHJ42_RS25170 (7980) | 7980..8570 | - | 591 | WP_000194576.1 | hypothetical protein | - |
| HHJ42_RS25175 (8570) | 8570..8827 | - | 258 | WP_000343085.1 | hypothetical protein | - |
| HHJ42_RS25180 (9394) | 9394..9807 | + | 414 | WP_001690258.1 | hypothetical protein | - |
| HHJ42_RS25185 (9809) | 9809..10588 | + | 780 | WP_006704469.1 | site-specific integrase | - |
| HHJ42_RS25190 (10768) | 10768..11412 | + | 645 | WP_001144036.1 | ParA family protein | - |
| HHJ42_RS25195 (11499) | 11499..11807 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| HHJ42_RS25200 (12221) | 12221..13201 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| HHJ42_RS25205 (13194) | 13194..13610 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| HHJ42_RS25210 (13612) | 13612..14886 | - | 1275 | WP_033561923.1 | Y-family DNA polymerase | - |
| HHJ42_RS25215 (14886) | 14886..15323 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HHJ42_RS25220 (15320) | 15320..15568 | - | 249 | WP_000618111.1 | DinI-like family protein | - |
| HHJ42_RS25225 (15986) | 15986..16888 | + | 903 | WP_211145638.1 | DUF1281 domain-containing protein | - |
| HHJ42_RS25230 (16885) | 16885..17196 | + | 312 | WP_001732000.1 | hypothetical protein | - |
| HHJ42_RS25235 (17272) | 17272..17955 | + | 684 | WP_021511694.1 | DNA methylase | - |
| HHJ42_RS25240 (17956) | 17956..18177 | + | 222 | WP_021511693.1 | hypothetical protein | - |
| HHJ42_RS25245 (18158) | 18158..18625 | + | 468 | WP_225384886.1 | DUF1380 family protein | - |
| HHJ42_RS25250 (18670) | 18670..19440 | + | 771 | WP_033561909.1 | hypothetical protein | - |
| HHJ42_RS25255 (19851) | 19851..20276 | + | 426 | WP_001198902.1 | antirestriction protein | - |
| HHJ42_RS25260 (20323) | 20323..20745 | + | 423 | WP_001629087.1 | DUF1380 family protein | - |
| HHJ42_RS25265 (20742) | 20742..20933 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| HHJ42_RS25270 (21004) | 21004..21318 | + | 315 | WP_001434357.1 | hypothetical protein | - |
| HHJ42_RS25275 (21702) | 21702..22229 | + | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| HHJ42_RS25280 (22287) | 22287..22520 | + | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| HHJ42_RS25285 (22579) | 22579..24537 | + | 1959 | WP_079932375.1 | ParB/RepB/Spo0J family partition protein | - |
| HHJ42_RS25290 (24592) | 24592..25026 | + | 435 | WP_001387500.1 | conjugation system SOS inhibitor PsiB | - |
| HHJ42_RS25295 (25023) | 25023..25742 | + | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| HHJ42_RS25300 (25739) | 25739..26335 | + | 597 | WP_000977995.1 | hypothetical protein | - |
| HHJ42_RS25305 (26797) | 26797..27297 | + | 501 | WP_000117611.1 | antirestriction protein ArdA | - |
| HHJ42_RS25310 (28026) | 28026..28460 | + | 435 | WP_060527655.1 | hypothetical protein | - |
| HHJ42_RS25315 (28554) | 28554..28820 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| HHJ42_RS25320 (28885) | 28885..29799 | + | 915 | WP_000038401.1 | Recombination-promoting nuclease RpnA | VF |
| HHJ42_RS25325 (29822) | 29822..30019 | + | 198 | WP_001348086.1 | hypothetical protein | - |
| HHJ42_RS25330 (30050) | 30050..30301 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| HHJ42_RS25335 (30882) | 30882..31730 | + | 849 | WP_021293964.1 | DUF4942 domain-containing protein | - |
| HHJ42_RS25340 (31816) | 31816..32151 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| HHJ42_RS25345 (32385) | 32385..32717 | + | 333 | WP_033561884.1 | IncI1-type relaxosome accessory protein NikA | - |
| HHJ42_RS25350 (32728) | 32728..35427 | + | 2700 | WP_001360283.1 | Protein TraI | Relaxase |
| HHJ42_RS25355 (35464) | 35464..37755 | - | 2292 | WP_001289276.1 | F-type conjugative transfer protein TrbC | - |
| HHJ42_RS25360 (37748) | 37748..38818 | - | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| HHJ42_RS25365 (38837) | 38837..40045 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (40225) | 40225..40282 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (40225) | 40225..40282 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (40225) | 40225..40282 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (40225) | 40225..40282 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| HHJ42_RS25370 (40337) | 40337..40489 | + | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| HHJ42_RS25375 (40561) | 40561..40812 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| HHJ42_RS26665 (41311) | 41311..41406 | + | 96 | WP_001303310.1 | DinQ-like type I toxin DqlB | - |
| HHJ42_RS25380 (41471) | 41471..41647 | - | 177 | WP_001054897.1 | hypothetical protein | - |
| HHJ42_RS25385 (42039) | 42039..42248 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| HHJ42_RS25390 (42320) | 42320..42970 | - | 651 | WP_032179289.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| HHJ42_RS25395 (43044) | 43044..45212 | - | 2169 | WP_171274544.1 | DotA/TraY family protein | - |
| HHJ42_RS25400 (45309) | 45309..45893 | - | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| HHJ42_RS25405 (45922) | 45922..47124 | - | 1203 | WP_001385654.1 | IncI1-type conjugal transfer protein TraW | - |
| HHJ42_RS25410 (47091) | 47091..47705 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| HHJ42_RS25415 (47705) | 47705..50749 | - | 3045 | WP_001024782.1 | IncI1-type conjugal transfer protein TraU | - |
| HHJ42_RS25420 (50839) | 50839..51639 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| HHJ42_RS25425 (51623) | 51623..51811 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| HHJ42_RS25430 (51875) | 51875..52279 | - | 405 | WP_000086958.1 | IncI1-type conjugal transfer protein TraR | - |
| HHJ42_RS25435 (52330) | 52330..52857 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| HHJ42_RS25440 (52857) | 52857..53561 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| HHJ42_RS25445 (53561) | 53561..54850 | - | 1290 | WP_001272003.1 | conjugal transfer protein TraO | - |
| HHJ42_RS25450 (54853) | 54853..55836 | - | 984 | WP_001191877.1 | hypothetical protein | VF |
| HHJ42_RS25455 (55847) | 55847..56539 | - | 693 | WP_000138550.1 | DotI/IcmL family type IV secretion protein | - |
| HHJ42_RS25460 (56536) | 56536..56883 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| HHJ42_RS25465 (56901) | 56901..60668 | - | 3768 | WP_001141527.1 | DUF5710 domain-containing protein | - |
| HHJ42_RS25470 (60758) | 60758..61309 | - | 552 | WP_000014583.1 | Phospholipase D | VF |
| HHJ42_RS25475 (61324) | 61324..61614 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| HHJ42_RS25480 (61611) | 61611..62759 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| HHJ42_RS25485 (62756) | 62756..63574 | - | 819 | WP_000646098.1 | hypothetical protein | VF |
| HHJ42_RS25490 (63571) | 63571..64029 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| HHJ42_RS25495 (64424) | 64424..65008 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| HHJ42_RS25500 (65068) | 65068..66270 | - | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| HHJ42_RS25505 (66355) | 66355..67179 | - | 825 | WP_001238939.1 | conjugal transfer protein TraE | - |
| HHJ42_RS25510 (67330) | 67330..68484 | - | 1155 | WP_001139957.1 | site-specific integrase | - |
| HHJ42_RS25515 (70005) | 70005..70253 | + | 249 | WP_001349157.1 | hypothetical protein | - |
| HHJ42_RS25520 (70250) | 70250..71542 | - | 1293 | WP_001417545.1 | hypothetical protein | VF |
| HHJ42_RS25525 (71542) | 71542..72198 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| HHJ42_RS25530 (72183) | 72183..72743 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| HHJ42_RS25535 (72753) | 72753..73367 | - | 615 | WP_000959785.1 | hypothetical protein | VF |
| HHJ42_RS25540 (73385) | 73385..74482 | - | 1098 | WP_001208805.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| HHJ42_RS25545 (74495) | 74495..76048 | - | 1554 | WP_000362202.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| HHJ42_RS25550 (76059) | 76059..76511 | - | 453 | WP_001247336.1 | hypothetical protein | VF |
| HHJ42_RS25555 (76498) | 76498..77793 | - | 1296 | WP_021560540.1 | hypothetical protein | VF |
| HHJ42_RS25560 (77786) | 77786..79468 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| HHJ42_RS25565 (79482) | 79482..79919 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| HHJ42_RS25570 (79919) | 79919..80986 | - | 1068 | WP_171274542.1 | hypothetical protein | VF |
| HHJ42_RS25575 (81660) | 81660..82112 | - | 453 | WP_000008894.1 | hypothetical protein | - |
| HHJ42_RS25580 (82155) | 82155..82409 | - | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| HHJ42_RS25585 (82571) | 82571..83122 | - | 552 | WP_000744644.1 | hypothetical protein | - |
| HHJ42_RS25590 (83295) | 83295..83978 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| HHJ42_RS25595 (84231) | 84231..84764 | - | 534 | WP_001306770.1 | transcription termination/antitermination NusG family protein | - |
| HHJ42_RS25600 (85206) | 85206..85493 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| HHJ42_RS25605 (85411) | 85411..85689 | - | 279 | WP_219065241.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|