MGE detailed information
MGE type: Conjugative plasmid MGE length: 72961 bp
Accession: NZ_CP051708 Location: 1..72961 Organism: Escherichia coli strain SCU-124 Replicon: plasmid pSCU-124-2
Accession: NZ_CP051708 Location: 1..72961 Organism: Escherichia coli strain SCU-124 Replicon: plasmid pSCU-124-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ37_RS24060 () | 1..858 | + | 858 | WP_000130646.1 | incFII family plasmid replication initiator RepA | - |
| HHJ37_RS23460 () | 1561..1821 | + | 261 | WP_019842130.1 | hypothetical protein | - |
| HHJ37_RS23465 () | 1928..2191 | + | 264 | WP_001089473.1 | hypothetical protein | - |
| HHJ37_RS23470 () | 2181..2480 | + | 300 | WP_001528606.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HHJ37_RS23475 () | 2516..3181 | - | 666 | WP_001535733.1 | hypothetical protein | - |
| HHJ37_RS23480 () | 3369..4229 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| HHJ37_RS23485 () | 4412..4969 | - | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| HHJ37_RS23490 () | 5133..8138 | + | 3006 | WP_001143760.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| HHJ37_RS23495 () | 8706..9269 | - | 564 | WP_000351266.1 | pentapeptide repeat-containing protein | - |
| HHJ37_RS23500 () | 9273..10004 | - | 732 | WP_000155032.1 | ATP-binding cassette domain-containing protein | - |
| HHJ37_RS23505 () | 10001..10726 | - | 726 | WP_000258040.1 | microcin B17 immunity protein McbE | - |
| HHJ37_RS23510 () | 10736..11926 | - | 1191 | WP_000611492.1 | YcaO-like family protein | - |
| HHJ37_RS23515 () | 11907..12725 | - | 819 | WP_001528601.1 | SagB/ThcOx family dehydrogenase | - |
| HHJ37_RS23520 () | 12727..13614 | - | 888 | WP_000243884.1 | McbB family protein | - |
| HHJ37_RS23525 () | 13641..13850 | - | 210 | WP_001535752.1 | microcin B17 | - |
| HHJ37_RS23530 () | 14380..14832 | + | 453 | WP_000670962.1 | N-acetyltransferase | - |
| HHJ37_RS23540 () | 15235..15585 | - | 351 | WP_001365718.1 | plasmid partitioning/stability family protein | - |
| HHJ37_RS23545 () | 15588..16550 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| HHJ37_RS23550 () | 17086..17989 | + | 904 | Protein_19 | DUF1281 domain-containing protein | - |
| HHJ37_RS23555 () | 17986..18295 | + | 310 | Protein_20 | hypothetical protein | - |
| HHJ37_RS23560 () | 18370..19049 | + | 680 | Protein_21 | DNA methylase | - |
| HHJ37_RS23565 () | 19284..19714 | + | 431 | Protein_22 | DUF1380 domain-containing protein | - |
| HHJ37_RS24065 () | 19758..20526 | + | 769 | Protein_23 | hypothetical protein | - |
| HHJ37_RS23585 () | 21067..21369 | + | 303 | WP_157941827.1 | antirestriction protein | - |
| HHJ37_RS24070 () | 21566..21834 | + | 269 | Protein_25 | DNA methylase | - |
| HHJ37_RS23595 () | 21834..22025 | + | 192 | WP_169063475.1 | hypothetical protein | - |
| HHJ37_RS23600 () | 22004..22464 | - | 461 | Protein_27 | hypothetical protein | - |
| HHJ37_RS23605 () | 22975..23205 | + | 231 | WP_000155844.1 | hypothetical protein | - |
| HHJ37_RS23610 () | 23257..24618 | + | 1362 | WP_000170671.1 | DUF3560 domain-containing protein | - |
| HHJ37_RS23615 () | 24665..25228 | + | 564 | WP_001298559.1 | class I SAM-dependent methyltransferase | - |
| HHJ37_RS23620 () | 25314..25766 | - | 453 | WP_024185774.1 | hypothetical protein | - |
| HHJ37_RS23625 () | 26068..26595 | + | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| HHJ37_RS23630 () | 26653..26886 | + | 234 | WP_033551487.1 | DUF905 family protein | - |
| HHJ37_RS23635 () | 26945..28909 | + | 1965 | WP_169063476.1 | ParB/RepB/Spo0J family partition protein | - |
| HHJ37_RS23640 () | 28978..29412 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| HHJ37_RS23645 () | 29409..30128 | + | 720 | WP_113365649.1 | plasmid SOS inhibition protein A | - |
| - () | 30140..30364 | + | 225 | NuclAT_0 | - | - |
| - () | 30140..30364 | + | 225 | NuclAT_0 | - | - |
| - () | 30140..30364 | + | 225 | NuclAT_0 | - | - |
| - () | 30140..30364 | + | 225 | NuclAT_0 | - | - |
| HHJ37_RS23650 () | 30149..30328 | - | 180 | WP_001309233.1 | hypothetical protein | - |
| HHJ37_RS23655 () | 30408..30566 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| HHJ37_RS23660 () | 30804..31139 | - | 336 | WP_032195784.1 | hypothetical protein | - |
| HHJ37_RS23670 () | 31482..31778 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| HHJ37_RS23675 () | 31889..32710 | + | 822 | WP_001234445.1 | DUF945 domain-containing protein | - |
| HHJ37_RS23680 () | 33007..33609 | - | 603 | Protein_42 | hypothetical protein | VF |
| HHJ37_RS23685 () | 33930..34313 | + | 384 | WP_001151538.1 | relaxosome protein TraM | - |
| HHJ37_RS23690 () | 34500..35189 | + | 690 | WP_016239105.1 | conjugal transfer transcriptional regulator TraJ | - |
| HHJ37_RS23695 () | 35288..35683 | + | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| HHJ37_RS23700 () | 35716..36075 | + | 360 | WP_019842162.1 | type IV conjugative transfer system pilin TraA | - |
| HHJ37_RS23705 () | 36090..36401 | + | 312 | WP_000012113.1 | type IV conjugative transfer system protein TraL | - |
| HHJ37_RS23710 () | 36423..36989 | + | 567 | WP_000399801.1 | type IV conjugative transfer system protein TraE | - |
| HHJ37_RS23715 () | 36976..37704 | + | 729 | WP_001230771.1 | type-F conjugative transfer system secretin TraK | - |
| HHJ37_RS23720 () | 37704..39155 | + | 1452 | WP_000146663.1 | conjugal transfer protein TraB | - |
| HHJ37_RS23725 () | 39124..39711 | + | 588 | WP_001309238.1 | conjugal transfer protein TraP | - |
| HHJ37_RS23730 () | 39665..40015 | + | 351 | WP_071586941.1 | conjugal transfer protein TrbD | - |
| HHJ37_RS23735 () | 40015..40530 | + | 516 | WP_000809872.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HHJ37_RS23740 () | 40665..40886 | + | 222 | WP_001278695.1 | conjugal transfer protein TraR | - |
| HHJ37_RS23745 () | 40879..41356 | + | 478 | Protein_55 | hypothetical protein | - |
| HHJ37_RS23750 () | 41436..41654 | + | 219 | WP_000556745.1 | hypothetical protein | - |
| HHJ37_RS23755 () | 41682..42029 | + | 348 | WP_000836682.1 | hypothetical protein | - |
| HHJ37_RS23760 () | 42155..44785 | + | 2631 | WP_032152342.1 | type IV secretion system protein TraC | - |
| HHJ37_RS23765 () | 44782..45168 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| HHJ37_RS23770 () | 45165..45797 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| HHJ37_RS23775 () | 45794..46786 | + | 993 | WP_000830849.1 | conjugal transfer pilus assembly protein TraU | - |
| HHJ37_RS23780 () | 46816..47121 | + | 306 | WP_000224418.1 | hypothetical protein | - |
| HHJ37_RS23785 () | 47130..47768 | + | 639 | WP_001080251.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HHJ37_RS23790 () | 47765..49615 | + | 1851 | WP_000821860.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HHJ37_RS23795 () | 49642..49899 | + | 258 | WP_000864329.1 | conjugal transfer protein TrbE | - |
| HHJ37_RS23800 () | 49892..50635 | + | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HHJ37_RS23805 () | 50649..50993 | + | 345 | WP_000556796.1 | conjugal transfer protein TrbA | - |
| HHJ37_RS23810 () | 51112..51396 | + | 285 | WP_000624194.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| HHJ37_RS23815 () | 51383..51928 | + | 546 | WP_000059831.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HHJ37_RS23820 () | 51858..52205 | + | 348 | WP_001309242.1 | P-type conjugative transfer protein TrbJ | - |
| HHJ37_RS23825 () | 52153..52578 | + | 426 | WP_001323332.1 | F-type conjugal transfer protein TrbF | - |
| HHJ37_RS23830 () | 52565..53938 | + | 1374 | WP_000944331.1 | conjugal transfer protein TraH | - |
| HHJ37_RS23835 () | 53935..56757 | + | 2823 | WP_001007081.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HHJ37_RS23840 () | 56772..57275 | + | 504 | WP_000605510.1 | hypothetical protein | - |
| HHJ37_RS23845 () | 57307..58038 | + | 732 | WP_000850422.1 | complement resistance protein TraT | - |
| HHJ37_RS23850 () | 58241..58978 | + | 738 | WP_169063472.1 | hypothetical protein | - |
| HHJ37_RS23855 () | 59029..61173 | + | 2145 | WP_169063477.1 | type IV conjugative transfer system coupling protein TraD | - |
| HHJ37_RS23860 () | 61173..66443 | + | 5271 | WP_169063478.1 | Multifunctional conjugation protein TraI | Relaxase |
| HHJ37_RS23865 () | 66463..67209 | + | 747 | WP_001530462.1 | conjugal transfer pilus acetylase TraX | - |
| HHJ37_RS23870 () | 67264..67821 | + | 558 | WP_169063479.1 | fertility inhibition protein FinO | - |
| HHJ37_RS23875 () | 67973..68176 | + | 204 | WP_001336517.1 | hypothetical protein | - |
| HHJ37_RS23880 () | 68860..70073 | + | 1214 | WP_162901046.1 | IS3 family transposase IS629 | Transposase |
| HHJ37_RS23885 () | 70231..70692 | + | 462 | WP_000760080.1 | thermonuclease family protein | - |
| HHJ37_RS24075 () | 70795..71179 | + | 385 | Protein_84 | hypothetical protein | - |
| HHJ37_RS23895 () | 71332..71769 | + | 438 | WP_000872609.1 | hypothetical protein | - |
| - () | 71864..71920 | - | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 71864..71920 | - | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 71864..71920 | - | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 71864..71920 | - | 57 | NuclAT_1 | - | Antitoxin Detail |
| HHJ37_RS23900 () | 71968..72117 | + | 150 | WP_001336447.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| HHJ37_RS23905 () | 72402..72659 | + | 258 | WP_000084404.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|