MGE detailed information
MGE type: Prophage MGE length: 91846 bp
Accession: NZ_CP049165 Location: 1296277..1388122 Organism: Shigella sonnei strain 0401952027 Replicon: chromosome
Accession: NZ_CP049165 Location: 1296277..1388122 Organism: Shigella sonnei strain 0401952027 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G6O56_RS06690 () | 1292133..1292933 | + | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| G6O56_RS06695 () | 1292946..1293797 | + | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| G6O56_RS06700 () | 1293852..1294310 | + | 459 | WP_000156255.1 | DUF986 family protein | - |
| G6O56_RS06705 () | 1294739..1295305 | + | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| G6O56_RS06710 () | 1295302..1296111 | - | 810 | WP_000010143.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| G6O56_RS06715 () | 1296277..1296486 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| G6O56_RS06720 () | 1296499..1296642 | - | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| G6O56_RS06725 () | 1297312..1297599 | - | 288 | WP_001006860.1 | YebO family protein | - |
| G6O56_RS06730 () | 1297674..1297817 | - | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| G6O56_RS06735 () | 1297976..1298215 | + | 240 | WP_001211011.1 | YobH family protein | - |
| G6O56_RS06740 () | 1298358..1299149 | - | 792 | WP_001262174.1 | DNA-binding transcriptional regulator KdgR | - |
| G6O56_RS06745 () | 1299326..1300389 | + | 1064 | Protein_1322 | MFS transporter | - |
| G6O56_RS06750 () | 1300435..1301316 | - | 882 | WP_000984517.1 | protease HtpX | - |
| G6O56_RS06755 () | 1301508..1303556 | - | 2049 | WP_011310196.1 | carboxy terminal-processing peptidase | - |
| G6O56_RS06760 () | 1303576..1304274 | - | 699 | WP_000431362.1 | RNA chaperone ProQ | - |
| G6O56_RS06765 () | 1304371..1304868 | - | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| G6O56_RS06770 () | 1304998..1306281 | + | 1284 | WP_001207284.1 | membrane integrity lipid transport subunit YebS | - |
| G6O56_RS06775 () | 1306250..1308883 | + | 2634 | WP_005138565.1 | hypothetical protein | VF |
| G6O56_RS06780 () | 1308964..1310403 | + | 1440 | WP_005138560.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| G6O56_RS06785 () | 1310521..1310604 | + | 84 | Protein_1330 | DUF1480 family protein | - |
| G6O56_RS06795 () | 1311376..1311534 | + | 159 | Protein_1332 | YebV family protein | - |
| G6O56_RS06800 () | 1311639..1311830 | + | 192 | WP_001296140.1 | YebW family protein | - |
| G6O56_RS06805 () | 1311831..1312031 | - | 201 | Protein_1334 | serine/threonine-protein phosphatase | - |
| G6O56_RS06815 () | 1313287..1313592 | - | 306 | Protein_1336 | serine/threonine-protein phosphatase | - |
| G6O56_RS06820 () | 1313647..1314344 | + | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
| G6O56_RS06825 () | 1314358..1314531 | - | 174 | Protein_1338 | metallophosphoesterase | - |
| G6O56_RS06830 () | 1315182..1316338 | + | 1157 | WP_085948186.1 | IS3 family transposase ISSd1 | Transposase |
| G6O56_RS06835 () | 1316540..1318255 | + | 1716 | WP_011310192.1 | hypothetical protein | VF |
| G6O56_RS06845 () | 1319672..1319932 | + | 261 | WP_077447296.1 | excisionase | - |
| G6O56_RS06850 () | 1319961..1320415 | + | 455 | Protein_1343 | IS1-like element IS1A family transposase | - |
| G6O56_RS06855 () | 1320510..1321738 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| G6O56_RS06860 () | 1321749..1321994 | + | 246 | Protein_1345 | IS1 family transposase IS1R | Transposase |
| G6O56_RS06865 () | 1322031..1323107 | + | 1077 | WP_001189101.1 | hypothetical protein ; Integrase | Integrase |
| - | 1323238..1323472 | + | 235 | - | - | Antitoxin Detail |
| - | 1323239..1323342 | - | 104 | - | - | Toxin Detail |
| G6O56_RS06870 () | 1323500..1323841 | - | 342 | WP_000976476.1 | YebY family protein | - |
| G6O56_RS06875 () | 1323854..1324726 | - | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| G6O56_RS06880 () | 1324730..1325104 | - | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| G6O56_RS06885 () | 1325243..1325473 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G6O56_RS06890 () | 1325575..1326231 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| G6O56_RS06895 () | 1326255..1326917 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| G6O56_RS06900 () | 1326914..1328974 | - | 2061 | WP_000936913.1 | oligopeptidase B | - |
| G6O56_RS06905 () | 1329183..1329842 | - | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| G6O56_RS06910 () | 1330169..1330525 | - | 357 | WP_001295500.1 | protein YebF | - |
| G6O56_RS06915 () | 1330592..1330882 | - | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| G6O56_RS06920 () | 1331016..1332194 | + | 1179 | WP_000173484.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| G6O56_RS06925 () | 1332250..1332891 | - | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| G6O56_RS06930 () | 1332928..1334739 | - | 1812 | WP_001069438.1 | phosphogluconate dehydratase | - |
| G6O56_RS06935 () | 1334974..1336449 | - | 1476 | WP_000301720.1 | glucose-6-phosphate dehydrogenase | - |
| G6O56_RS06940 () | 1336786..1337655 | + | 870 | WP_001056711.1 | DNA-binding transcriptional regulator HexR | - |
| G6O56_RS06945 () | 1337783..1339225 | + | 1443 | WP_000091148.1 | pyruvate kinase | - |
| G6O56_RS06950 () | 1339285..1340127 | - | 843 | WP_000546442.1 | Nif3-like dinuclear metal center hexameric protein | - |
| G6O56_RS06960 () | 1341067..1341306 | + | 240 | WP_000961944.1 | hypothetical protein | - |
| G6O56_RS06965 () | 1341395..1343263 | + | 1869 | WP_000575888.1 | glycoside hydrolase family 127 protein | - |
| G6O56_RS06970 () | 1343300..1344925 | + | 1626 | Protein_1367 | alpha-mannosidase | - |
| G6O56_RS06975 () | 1344981..1345678 | + | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
| G6O56_RS06980 () | 1345694..1347151 | + | 1458 | Protein_1369 | glycosyl hydrolase-related protein | - |
| G6O56_RS06985 () | 1347239..1348210 | - | 972 | WP_000448381.1 | hypothetical protein | VF |
| G6O56_RS06990 () | 1348330..1349652 | - | 1323 | WP_001184041.1 | murein DD-endopeptidase MepM | - |
| G6O56_RS06995 () | 1349668..1350600 | - | 933 | WP_001300644.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| G6O56_RS07000 () | 1350679..1351434 | + | 756 | WP_000202996.1 | hypothetical protein | VF |
| G6O56_RS07005 () | 1351431..1352216 | + | 786 | WP_000571478.1 | hypothetical protein | VF |
| G6O56_RS07010 () | 1352363..1353373 | - | 1011 | WP_000568511.1 | Holliday junction branch migration DNA helicase RuvB | - |
| G6O56_RS07015 () | 1353382..1353993 | - | 612 | WP_000580326.1 | Holliday junction branch migration protein RuvA | - |
| G6O56_RS07020 () | 1354132..1354197 | - | 66 | WP_072095795.1 | stress response small protein YobI | - |
| G6O56_RS07025 () | 1354270..1354872 | + | 603 | WP_001024929.1 | YebB family permuted papain-like enzyme | - |
| G6O56_RS07030 () | 1354874..1355395 | - | 522 | WP_005140141.1 | crossover junction endodeoxyribonuclease RuvC | - |
| G6O56_RS07035 () | 1355430..1356170 | - | 741 | WP_000907248.1 | hypothetical protein | VF |
| G6O56_RS07040 () | 1356199..1356651 | - | 453 | WP_001308712.1 | dihydroneopterin triphosphate diphosphatase | - |
| G6O56_RS07045 () | 1356769..1358541 | - | 1773 | WP_001258664.1 | aspartate--tRNA ligase | - |
| G6O56_RS07050 () | 1358851..1359417 | + | 567 | WP_000891620.1 | hydrolase | - |
| G6O56_RS07055 () | 1359414..1359509 | + | 96 | Protein_1384 | hypothetical protein | - |
| G6O56_RS07060 () | 1359772..1360020 | + | 249 | WP_001217553.1 | DinI-like family protein | - |
| G6O56_RS07065 () | 1360621..1362374 | + | 1754 | Protein_1386 | hypothetical protein | VF |
| G6O56_RS07070 () | 1362444..1362548 | - | 105 | Protein_1387 | tail fiber assembly protein | - |
| G6O56_RS07075 () | 1362554..1363176 | - | 623 | Protein_1388 | DUF4376 domain-containing protein | - |
| G6O56_RS07080 () | 1363145..1363999 | - | 855 | Protein_1389 | phage tail protein | - |
| G6O56_RS07085 () | 1364108..1364823 | - | 716 | Protein_1390 | IS3 family transposase IS600 | Transposase |
| G6O56_RS07090 () | 1364878..1365575 | + | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
| G6O56_RS07095 () | 1365592..1366040 | - | 449 | Protein_1392 | IS3 family transposase IS600 | Transposase |
| G6O56_RS07100 () | 1366157..1366807 | - | 651 | Protein_1393 | IS3 family transposase IS2 | Transposase |
| G6O56_RS07105 () | 1366867..1368023 | + | 1157 | WP_087879964.1 | IS3 family transposase IS600 | Transposase |
| G6O56_RS07110 () | 1368066..1368544 | - | 479 | Protein_1395 | IS3 family transposase IS2 | Transposase |
| G6O56_RS07115 () | 1368578..1369750 | + | 1173 | WP_047565716.1 | IS21 family transposase IS21 | Transposase |
| G6O56_RS07120 () | 1369750..1370548 | + | 799 | Protein_1397 | IS21 family transposase IS21 | Transposase |
| G6O56_RS07125 () | 1370883..1371140 | + | 258 | WP_001064800.1 | hypothetical protein | - |
| G6O56_RS07130 () | 1371140..1371514 | + | 375 | WP_001215509.1 | RusA family crossover junction endodeoxyribonuclease | - |
| G6O56_RS07135 () | 1371511..1372365 | + | 855 | WP_000762867.1 | antitermination protein | - |
| G6O56_RS07150 () | 1373220..1373351 | + | 132 | WP_000562553.1 | DUF3927 family protein | - |
| G6O56_RS07155 () | 1373632..1373967 | - | 336 | WP_032156133.1 | anti-adapter protein IraM | - |
| G6O56_RS07160 () | 1374228..1374401 | + | 174 | WP_005145943.1 | DUF1737 domain-containing protein | - |
| G6O56_RS07170 () | 1375606..1376217 | - | 612 | WP_000620676.1 | hypothetical protein | - |
| G6O56_RS07175 () | 1376647..1376970 | - | 324 | WP_039059348.1 | hypothetical protein | - |
| G6O56_RS07180 () | 1377138..1377557 | - | 420 | WP_000882666.1 | hypothetical protein | - |
| G6O56_RS07185 () | 1377557..1377847 | - | 291 | WP_001216625.1 | hypothetical protein | - |
| G6O56_RS07190 () | 1378168..1378458 | - | 291 | WP_000666098.1 | hypothetical protein | - |
| G6O56_RS07195 () | 1378458..1379347 | - | 890 | Protein_1410 | helix-turn-helix domain-containing protein | - |
| G6O56_RS07200 () | 1379711..1380373 | - | 663 | WP_000021003.1 | DNA N-6-adenine-methyltransferase | - |
| G6O56_RS07205 () | 1380742..1381293 | - | 552 | WP_000996134.1 | Tn3 family transposase TnpR_ISAli20 | Transposase |
| G6O56_RS07210 () | 1381880..1382227 | + | 348 | Protein_1413 | DUF72 domain-containing protein | - |
| G6O56_RS07215 () | 1382280..1382675 | + | 396 | WP_000252980.1 | MAPEG family protein | - |
| G6O56_RS07220 () | 1382716..1383459 | + | 744 | WP_000019601.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| G6O56_RS07225 () | 1383456..1384427 | + | 972 | WP_000564745.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| G6O56_RS07230 () | 1384592..1386883 | - | 2292 | WP_005153493.1 | trimethylamine N-oxide reductase TorZ | - |
| G6O56_RS07240 () | 1388184..1388288 | - | 105 | WP_052942460.1 | twin-arginine translocation signal domain-containing protein | - |
| G6O56_RS07245 () | 1388313..1389413 | - | 1101 | WP_001214330.1 | NapC/NirT family cytochrome c | - |
| G6O56_RS07250 () | 1389801..1390547 | - | 747 | WP_001185741.1 | copper homeostasis protein CutC | - |
| G6O56_RS07255 () | 1390561..1391127 | - | 567 | WP_005140097.1 | VOC family protein | - |
| G6O56_RS07260 () | 1391343..1393079 | + | 1737 | WP_001025298.1 | arginine--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|