MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 106397 bp
Accession: NZ_CP047989 Location: 1..106397 Organism: Vibrio parahaemolyticus strain HZ-52 Replicon: plasmid pHZ52-3
Accession: NZ_CP047989 Location: 1..106397 Organism: Vibrio parahaemolyticus strain HZ-52 Replicon: plasmid pHZ52-3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GSS61_RS25550 (GSS61_26795) | 1005..1247 | - | 243 | WP_273693093.1 | hypothetical protein | - |
| GSS61_RS25555 (GSS61_26800) | 1444..1794 | + | 351 | WP_273693094.1 | hypothetical protein | - |
| GSS61_RS25560 (GSS61_26805) | 1811..2304 | + | 494 | Protein_3 | type IV secretory system conjugative DNA transfer family protein | - |
| GSS61_RS25565 (GSS61_26810) | 2446..2784 | + | 339 | WP_273693095.1 | type IV secretory system conjugative DNA transfer family protein | - |
| GSS61_RS25570 (GSS61_26815) | 2828..3349 | + | 522 | WP_273693096.1 | Conjugal transfer protein TraG | VF |
| GSS61_RS25575 | 3561..3749 | + | 189 | WP_273693097.1 | hypothetical protein | - |
| GSS61_RS25580 (GSS61_26825) | 3933..4340 | + | 408 | WP_273693098.1 | hypothetical protein | - |
| GSS61_RS25585 (GSS61_26830) | 4526..6725 | + | 2200 | Protein_8 | DNA topoisomerase 3 | - |
| GSS61_RS25590 | 6776..7798 | + | 1023 | WP_273693099.1 | Type IV secretion system protein virB1 | VF |
| GSS61_RS25595 (GSS61_26845) | 7962..9419 | + | 1458 | WP_159408184.1 | zincin-like metallopeptidase domain-containing protein | - |
| GSS61_RS25600 (GSS61_26850) | 9463..10041 | + | 579 | WP_086370927.1 | hypothetical protein | - |
| GSS61_RS25605 (GSS61_26855) | 10053..10646 | + | 594 | WP_025789626.1 | hypothetical protein | - |
| GSS61_RS25610 (GSS61_26860) | 10799..12577 | - | 1779 | WP_140060187.1 | Protein TraI | Relaxase |
| GSS61_RS25615 (GSS61_26865) | 12574..12894 | - | 321 | WP_180821454.1 | hypothetical protein | - |
| GSS61_RS25620 (GSS61_26870) | 13167..13550 | + | 384 | WP_140060189.1 | hypothetical protein | - |
| GSS61_RS25625 (GSS61_26875) | 13580..14338 | + | 759 | WP_140060190.1 | AAA family ATPase | - |
| GSS61_RS25630 (GSS61_26880) | 14335..14943 | + | 609 | WP_140060191.1 | hypothetical protein | - |
| GSS61_RS25635 (GSS61_26885) | 15065..16012 | + | 948 | WP_025789632.1 | Type IV secretion system protein VirB11 | VF |
| GSS61_RS25640 (GSS61_26890) | 16130..16327 | - | 198 | WP_025789633.1 | hypothetical protein | - |
| GSS61_RS25645 (GSS61_26895) | 16386..16541 | - | 156 | WP_153189414.1 | hypothetical protein | - |
| GSS61_RS25650 (GSS61_26900) | 16561..16845 | - | 285 | WP_140060192.1 | hypothetical protein | - |
| GSS61_RS25655 (GSS61_26905) | 16891..17229 | - | 339 | WP_140060193.1 | type I restriction endonuclease subunit M | - |
| GSS61_RS25660 (GSS61_26910) | 17312..17626 | - | 315 | WP_140060194.1 | hypothetical protein | - |
| GSS61_RS25665 (GSS61_26915) | 18190..18774 | + | 585 | WP_140060195.1 | DUF2913 family protein | - |
| GSS61_RS25670 (GSS61_26920) | 18791..18991 | + | 201 | WP_140060196.1 | hypothetical protein | - |
| GSS61_RS25675 | 19656..20294 | - | 639 | WP_216361669.1 | hypothetical protein | - |
| GSS61_RS25680 (GSS61_26930) | 20802..21350 | + | 549 | WP_273693100.1 | hypothetical protein | - |
| GSS61_RS25685 (GSS61_26935) | 21364..22284 | - | 921 | WP_010446562.1 | IS5 family transposase ISVa2 | Transposase |
| GSS61_RS25690 (GSS61_26940) | 22498..23127 | + | 630 | WP_273693101.1 | hypothetical protein | - |
| GSS61_RS25695 (GSS61_26945) | 23127..24170 | + | 1044 | WP_140060719.1 | hypothetical protein | - |
| GSS61_RS25700 (GSS61_26950) | 24309..24659 | - | 351 | WP_140060718.1 | hypothetical protein | - |
| GSS61_RS25705 (GSS61_26955) | 24973..25575 | + | 603 | WP_023623175.1 | Tn3 family transposase TnpR_ISArsp6 | Transposase |
| GSS61_RS25710 (GSS61_26960) | 25713..26099 | + | 387 | WP_025792428.1 | hypothetical protein | - |
| GSS61_RS25715 (GSS61_26965) | 26499..26642 | + | 144 | WP_023623177.1 | hypothetical protein | - |
| GSS61_RS25720 (GSS61_26970) | 27002..28255 | + | 1254 | WP_025789153.1 | hypothetical protein | - |
| GSS61_RS25725 (GSS61_26975) | 28637..29262 | + | 626 | Protein_36 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| GSS61_RS25730 (GSS61_26980) | 29321..29545 | + | 225 | WP_025789152.1 | hypothetical protein | - |
| GSS61_RS25735 (GSS61_26985) | 29554..29760 | + | 207 | WP_023623181.1 | hypothetical protein | - |
| GSS61_RS25740 (GSS61_26990) | 29796..30116 | + | 321 | WP_025792429.1 | hypothetical protein | - |
| GSS61_RS25745 | 31121..31291 | + | 171 | WP_224067182.1 | hypothetical protein | - |
| GSS61_RS25750 (GSS61_27000) | 31444..32421 | + | 978 | Protein_41 | IS91 family transposase ISVa3 | Transposase |
| GSS61_RS25755 (GSS61_27005) | 32865..33386 | + | 522 | WP_025789149.1 | outer membrane beta-barrel protein | - |
| GSS61_RS25760 (GSS61_27010) | 33529..34512 | + | 984 | WP_017449262.1 | outer membrane beta-barrel protein | - |
| GSS61_RS25765 (GSS61_27015) | 34640..34981 | + | 342 | WP_228490421.1 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| GSS61_RS25770 (GSS61_27020) | 35689..35862 | + | 174 | WP_017449264.1 | hypothetical protein | - |
| GSS61_RS25775 (GSS61_27025) | 36020..36439 | + | 420 | WP_129194448.1 | Spy/CpxP family protein refolding chaperone | - |
| GSS61_RS25780 (GSS61_27030) | 36930..37514 | - | 585 | Protein_47 | replication initiation protein | - |
| GSS61_RS25785 (GSS61_27035) | 37900..38163 | + | 264 | Protein_48 | IS6 family transposase ISSba18 | Transposase |
| GSS61_RS25790 (GSS61_27040) | 38164..38649 | + | 486 | WP_023624637.1 | recombinase family protein | - |
| GSS61_RS25795 (GSS61_27045) | 38750..38995 | + | 246 | WP_017449246.1 | type II toxin-antitoxin system CcdA family antitoxin | - |
| GSS61_RS25800 (GSS61_27050) | 38995..39312 | + | 318 | WP_023624638.1 | CcdB family protein | - |
| GSS61_RS25805 (GSS61_27055) | 39328..39540 | - | 213 | WP_127914006.1 | hypothetical protein | - |
| GSS61_RS25810 (GSS61_27060) | 39929..41047 | - | 1119 | WP_159357255.1 | Murein DD-endopeptidase MepM | VF |
| GSS61_RS25815 (GSS61_27065) | 41407..41583 | - | 177 | WP_153189439.1 | hypothetical protein | - |
| GSS61_RS25820 | 41798..41925 | - | 128 | Protein_55 | IS91 family transposase | - |
| GSS61_RS25825 (GSS61_27070) | 41961..42260 | - | 300 | WP_023624643.1 | hypothetical protein | - |
| GSS61_RS25830 (GSS61_27075) | 42336..42584 | - | 249 | WP_025789522.1 | helix-turn-helix domain-containing protein | - |
| GSS61_RS25835 (GSS61_27080) | 42666..43598 | - | 933 | WP_023624644.1 | OmpA family protein | - |
| GSS61_RS25840 (GSS61_27085) | 44385..44819 | + | 435 | WP_023624645.1 | IS630 family transposase ISSod10 | Transposase |
| GSS61_RS25845 (GSS61_27090) | 45112..45813 | - | 702 | WP_257972772.1 | DUF1566 domain-containing protein | - |
| GSS61_RS25850 (GSS61_27095) | 45948..46979 | - | 1032 | WP_159408187.1 | Ig-like domain-containing protein | - |
| GSS61_RS25855 (GSS61_27100) | 47540..47914 | - | 375 | WP_127914005.1 | hypothetical protein | - |
| GSS61_RS25860 (GSS61_27105) | 48224..48445 | + | 222 | WP_023624649.1 | hypothetical protein | - |
| GSS61_RS25865 (GSS61_27110) | 49048..49431 | + | 384 | Protein_64 | Tn3 family transposase TnpR_ISArsp6 | Transposase |
| GSS61_RS25870 (GSS61_27115) | 49426..50028 | - | 603 | WP_224067207.1 | site-specific integrase | - |
| GSS61_RS25875 (GSS61_27120) | 50602..50832 | + | 231 | WP_017449238.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| GSS61_RS25880 (GSS61_27125) | 50829..51170 | + | 342 | WP_023624650.1 | endoribonuclease MazF | Toxin Detail |
| GSS61_RS25885 (GSS61_27130) | 51473..52048 | - | 576 | WP_017449240.1 | hypothetical protein | - |
| GSS61_RS25890 (GSS61_27135) | 52048..52779 | - | 732 | WP_025789518.1 | AHH domain-containing protein | - |
| GSS61_RS25895 (GSS61_27140) | 53040..53131 | - | 92 | Protein_70 | DUF3265 domain-containing protein | - |
| GSS61_RS25900 (GSS61_27145) | 54022..55110 | - | 1089 | WP_086370877.1 | replication initiation protein | - |
| GSS61_RS25905 (GSS61_27150) | 55444..56082 | - | 639 | Protein_72 | IS5 family transposase ISVpa3 | Transposase |
| GSS61_RS25910 (GSS61_27155) | 56450..57088 | + | 639 | WP_193239207.1 | hypothetical protein | - |
| GSS61_RS25915 (GSS61_27160) | 57166..57546 | + | 381 | WP_122016152.1 | hypothetical protein | - |
| GSS61_RS25920 (GSS61_27165) | 57519..57722 | + | 204 | WP_127914004.1 | hypothetical protein | - |
| GSS61_RS25925 (GSS61_27170) | 57719..60454 | + | 2736 | WP_025789493.1 | TcfC E-set like domain-containing protein | - |
| GSS61_RS25930 (GSS61_27175) | 60460..61209 | + | 750 | WP_025789494.1 | hypothetical protein | - |
| GSS61_RS25935 (GSS61_27180) | 61206..62264 | + | 1059 | WP_044140000.1 | hypothetical protein | - |
| GSS61_RS25940 (GSS61_27185) | 62264..63184 | + | 921 | WP_025789495.1 | OmpA family protein | - |
| GSS61_RS25945 (GSS61_27190) | 63188..65959 | + | 2772 | WP_159408186.1 | hypothetical protein | - |
| GSS61_RS25950 (GSS61_27195) | 66218..66850 | + | 633 | WP_129194440.1 | hypothetical protein | - |
| GSS61_RS25955 (GSS61_27200) | 66922..67281 | + | 360 | WP_153574003.1 | hypothetical protein | - |
| GSS61_RS25960 (GSS61_27205) | 67756..67959 | - | 204 | Protein_83 | hypothetical protein | VF |
| GSS61_RS25965 (GSS61_27210) | 68104..68247 | - | 144 | WP_153189461.1 | hypothetical protein | - |
| GSS61_RS25970 (GSS61_27215) | 68244..69335 | - | 1092 | Protein_85 | IS3 family transposase | - |
| GSS61_RS25975 (GSS61_27220) | 69777..70874 | + | 1098 | WP_025792418.1 | Outer membrane protein A | VF |
| GSS61_RS25980 (GSS61_27225) | 70892..75778 | + | 4887 | WP_159404413.1 | Ig-like domain-containing protein | - |
| GSS61_RS25985 | 76416..76898 | - | 483 | Protein_88 | DDE-type integrase/transposase/recombinase | - |
| GSS61_RS25990 | 78882..79262 | + | 381 | Protein_89 | transposase | - |
| GSS61_RS25995 (GSS61_27240) | 79616..81535 | + | 1920 | WP_086370861.1 | metallophosphoesterase | - |
| GSS61_RS26000 (GSS61_27245) | 81745..82035 | + | 291 | Protein_91 | transposase | - |
| GSS61_RS26005 (GSS61_27250) | 82029..83099 | - | 1071 | WP_086370862.1 | ParB family protein | - |
| GSS61_RS26010 (GSS61_27255) | 83099..84298 | - | 1200 | WP_071653156.1 | ParA family protein | - |
| GSS61_RS26015 (GSS61_27260) | 85018..85098 | + | 81 | Protein_94 | recombinase family protein | - |
| GSS61_RS26020 (GSS61_27265) | 85233..85977 | + | 745 | Protein_95 | Recombination-promoting nuclease RpnA | VF |
| GSS61_RS26025 (GSS61_27270) | 86664..87089 | - | 426 | WP_025789544.1 | hypothetical protein | - |
| GSS61_RS26030 (GSS61_27275) | 87073..87759 | - | 687 | WP_044140048.1 | hypothetical protein | - |
| GSS61_RS26035 (GSS61_27280) | 88471..89118 | - | 648 | WP_023623169.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| GSS61_RS26040 (GSS61_27285) | 89296..92322 | + | 3027 | WP_025789702.1 | Tn3 family transposase TnpA_ISShfr9 | Transposase |
| GSS61_RS26045 (GSS61_27290) | 92332..92808 | + | 477 | WP_236578074.1 | Recombination-promoting nuclease RpnA | VF |
| GSS61_RS26050 (GSS61_27295) | 92897..93271 | - | 375 | WP_025788816.1 | hypothetical protein | - |
| GSS61_RS26055 (GSS61_27300) | 94183..95022 | - | 840 | WP_102591337.1 | hypothetical protein | - |
| GSS61_RS26060 (GSS61_27305) | 96371..96745 | + | 375 | WP_140342768.1 | TrbC/VirB2 family protein | - |
| GSS61_RS26065 (GSS61_27310) | 96757..97050 | + | 294 | WP_025789605.1 | conjugal transfer protein TrbD | - |
| GSS61_RS26070 (GSS61_27315) | 97047..99458 | + | 2412 | WP_140342769.1 | conjugal transfer protein TrbE | - |
| GSS61_RS26075 (GSS61_27320) | 99445..100221 | + | 777 | WP_140342770.1 | P-type conjugative transfer protein TrbJ | - |
| GSS61_RS26080 (GSS61_27325) | 100236..100457 | + | 222 | WP_140342771.1 | hypothetical protein | - |
| GSS61_RS26085 (GSS61_27330) | 100508..102235 | + | 1728 | WP_159408319.1 | P-type conjugative transfer protein TrbL | - |
| GSS61_RS26090 (GSS61_27335) | 102180..102896 | + | 717 | WP_025789609.1 | type IV secretion system protein | - |
| GSS61_RS26095 (GSS61_27340) | 102914..103846 | + | 933 | WP_140342773.1 | P-type conjugative transfer protein TrbG | - |
| GSS61_RS26100 (GSS61_27345) | 103855..104280 | + | 426 | WP_086597983.1 | hypothetical protein | - |
| GSS61_RS26105 (GSS61_27350) | 104273..105556 | + | 1284 | WP_219601472.1 | TrbI/VirB10 family protein | - |
| GSS61_RS26110 (GSS61_27355) | 105648..106100 | + | 453 | WP_140342774.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|