MGE detailed information
MGE type: Conjugative plasmid MGE length: 134831 bp
Accession: NZ_CP047660 Location: 1..134831 Organism: Escherichia coli strain LD39-1 Replicon: plasmid pLD39-1-134kb
Accession: NZ_CP047660 Location: 1..134831 Organism: Escherichia coli strain LD39-1 Replicon: plasmid pLD39-1-134kb
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GUU82_RS23915 () | 1301..2041 | - | 741 | WP_001066939.1 | tyrosine-type recombinase/integrase | - |
| GUU82_RS23920 () | 2162..2296 | - | 135 | Protein_2 | serine/threonine protein kinase | - |
| GUU82_RS23925 () | 2590..3636 | + | 1047 | WP_089629747.1 | IS481 family transposase ISKpn28 | Transposase |
| GUU82_RS23930 () | 3755..5044 | + | 1290 | WP_089590645.1 | autotransporter strand-loop-strand O-heptosyltransferase | - |
| GUU82_RS23935 () | 5041..9300 | + | 4260 | WP_160183282.1 | AIDA-I autotransporter | VF |
| GUU82_RS23940 () | 9349..9444 | + | 96 | Protein_6 | transposase domain-containing protein | - |
| GUU82_RS23945 () | 10459..12000 | + | 1542 | WP_001298859.1 | IS21 family transposase ISEc12 | Transposase |
| GUU82_RS23950 () | 12015..12761 | + | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| GUU82_RS23955 () | 13399..13980 | - | 582 | WP_160183283.1 | lipopolysaccharide core heptose(II)-phosphate phosphatase | - |
| GUU82_RS23960 () | 14633..15330 | + | 698 | Protein_10 | IS1-like element IS1A family transposase | - |
| GUU82_RS23965 () | 16123..17124 | + | 1002 | WP_160183284.1 | hypothetical protein | - |
| GUU82_RS23970 () | 17909..20269 | + | 2361 | WP_160183297.1 | Hyaluronate lyase | VF |
| GUU82_RS23975 () | 20273..22957 | + | 2685 | WP_160183285.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| GUU82_RS23980 () | 24408..25259 | - | 852 | WP_160183286.1 | Right origin-binding protein | VF |
| GUU82_RS23985 () | 25449..26129 | - | 681 | WP_160183287.1 | EAL domain-containing protein | - |
| GUU82_RS23990 () | 26276..27118 | - | 843 | WP_160183288.1 | helix-turn-helix domain-containing protein | - |
| GUU82_RS24000 () | 29199..30427 | + | 1229 | WP_089541817.1 | IS3 family transposase IS2 | Transposase |
| GUU82_RS24005 () | 30438..31616 | + | 1179 | WP_160183290.1 | autotransporter strand-loop-strand O-heptosyltransferase | - |
| GUU82_RS24010 () | 31613..35137 | + | 3525 | WP_160183291.1 | AIDA-I autotransporter | VF |
| GUU82_RS24015 () | 35926..36045 | - | 120 | Protein_21 | IS3 family transposase | - |
| GUU82_RS24020 () | 36184..36498 | + | 315 | WP_001543753.1 | hypothetical protein | - |
| GUU82_RS24025 () | 36526..37688 | + | 1163 | WP_085947598.1 | IS3 family transposase ISEc17 | Transposase |
| GUU82_RS24030 () | 37724..38425 | + | 702 | Protein_24 | RNA polymerase sigma factor RpoH | - |
| GUU82_RS24035 () | 38477..39283 | - | 807 | WP_001061054.1 | bacteriocin family protein | - |
| GUU82_RS24040 () | 39285..40340 | - | 1056 | WP_001493054.1 | Dyp-type peroxidase | - |
| GUU82_RS24045 () | 40434..41210 | - | 777 | WP_000362423.1 | NAD-dependent formate dehydrogenase | - |
| GUU82_RS24050 () | 41286..41983 | + | 698 | Protein_28 | IS1 family transposase | - |
| GUU82_RS24055 () | 42118..42693 | + | 576 | WP_112022434.1 | Tn3 family transposase TnpR_ISYps3 | Transposase |
| GUU82_RS24060 () | 42892..43290 | + | 399 | WP_000798353.1 | ester cyclase | - |
| GUU82_RS24065 () | 43310..44263 | + | 954 | WP_000716854.1 | helix-turn-helix domain-containing protein | - |
| GUU82_RS24070 () | 44334..45110 | + | 777 | WP_000668513.1 | MBL fold metallo-hydrolase | - |
| GUU82_RS24075 () | 45308..45631 | + | 324 | Protein_33 | Tn3 family transposase TnpA_ISSba14 | Transposase |
| GUU82_RS24080 () | 45710..46714 | + | 1005 | WP_000427619.1 | IS110 family transposase IS5075 | Transposase |
| GUU82_RS24085 () | 46991..47371 | + | 381 | Protein_35 | DUF4365 domain-containing protein | - |
| GUU82_RS24090 () | 47694..48281 | + | 588 | WP_000264477.1 | hypothetical protein | - |
| GUU82_RS24095 () | 48322..49290 | - | 969 | WP_181663926.1 | IS5 family transposase IS903B | Transposase |
| GUU82_RS24100 () | 49323..49619 | - | 297 | WP_000379665.1 | helix-turn-helix domain-containing protein | - |
| GUU82_RS24105 () | 49925..50485 | - | 561 | WP_001088744.1 | hypothetical protein | - |
| GUU82_RS24110 () | 50583..50915 | + | 333 | WP_001446018.1 | helix-turn-helix domain-containing protein | - |
| GUU82_RS24115 () | 51118..51552 | - | 435 | WP_001214166.1 | hypothetical protein | - |
| GUU82_RS24120 () | 51552..53918 | - | 2367 | WP_000716059.1 | hypothetical protein | - |
| GUU82_RS24125 () | 53915..55465 | - | 1551 | WP_000086929.1 | site-specific integrase | - |
| GUU82_RS24130 () | 55449..56324 | - | 876 | WP_001059072.1 | site-specific integrase | - |
| GUU82_RS24135 () | 57136..58482 | + | 1347 | WP_160183292.1 | ISNCY family transposase ISLad2 | Transposase |
| GUU82_RS24140 () | 59174..60402 | + | 1229 | WP_089541817.1 | IS3 family transposase IS2 | Transposase |
| GUU82_RS24145 () | 60735..61001 | - | 267 | Protein_47 | transposase | - |
| GUU82_RS24150 () | 61525..62130 | + | 606 | WP_089590652.1 | YfdX family protein | - |
| GUU82_RS24155 () | 62124..62821 | - | 698 | Protein_49 | IS1-like element IS1A family transposase | - |
| GUU82_RS24160 () | 63347..64267 | - | 921 | Protein_50 | DDE-type integrase/transposase/recombinase | - |
| GUU82_RS24165 () | 64377..65074 | + | 698 | Protein_51 | IS1-like element IS1A family transposase | - |
| GUU82_RS24170 () | 65119..65692 | + | 574 | Protein_52 | helix-turn-helix domain-containing protein | - |
| GUU82_RS24175 () | 65979..67025 | - | 1047 | WP_160183293.1 | IS481 family transposase ISKpn28 | Transposase |
| GUU82_RS24180 () | 67178..67462 | - | 285 | WP_160183294.1 | hypothetical protein | - |
| GUU82_RS24185 () | 68742..69248 | + | 507 | WP_045173867.1 | thiol peroxidase | - |
| GUU82_RS24805 () | 69308..69511 | - | 204 | Protein_56 | IS3 family transposase | - |
| GUU82_RS24190 () | 69821..70141 | + | 321 | Protein_57 | transposase family protein | - |
| GUU82_RS24195 () | 70168..70920 | - | 753 | Protein_58 | Tn3 family transposase TnpA_Tn3 | Transposase |
| GUU82_RS24200 () | 71044..71319 | - | 276 | WP_089629733.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| GUU82_RS24205 () | 71319..71603 | - | 285 | WP_089629734.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| GUU82_RS24210 () | 72511..73367 | - | 857 | Protein_61 | incFII family plasmid replication initiator RepA | - |
| GUU82_RS24215 () | 73360..73434 | - | 75 | WP_061357229.1 | RepA leader peptide Tap | - |
| GUU82_RS24220 () | 73666..73923 | - | 258 | WP_000083845.1 | replication regulatory protein RepA | - |
| GUU82_RS24225 () | 74207..74413 | - | 207 | WP_001351576.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 74400..74461 | + | 62 | NuclAT_1 | - | - |
| - () | 74400..74461 | + | 62 | NuclAT_1 | - | - |
| - () | 74400..74461 | + | 62 | NuclAT_1 | - | - |
| - () | 74400..74461 | + | 62 | NuclAT_1 | - | - |
| GUU82_RS24230 () | 74803..75015 | - | 213 | WP_032153777.1 | hypothetical protein | - |
| GUU82_RS24235 () | 75146..75706 | - | 561 | WP_021563950.1 | fertility inhibition protein FinO | - |
| GUU82_RS24240 () | 75761..76501 | - | 741 | WP_089590496.1 | conjugal transfer pilus acetylase TraX | - |
| GUU82_RS24245 () | 76521..81791 | - | 5271 | WP_089590495.1 | Multifunctional conjugation protein TraI | Relaxase |
| GUU82_RS24250 () | 81791..83971 | - | 2181 | WP_001493790.1 | type IV conjugative transfer system coupling protein TraD | - |
| GUU82_RS24255 () | 84224..84955 | - | 732 | WP_000850424.1 | complement resistance protein TraT | - |
| GUU82_RS24260 () | 84969..85478 | - | 510 | WP_000628099.1 | conjugal transfer entry exclusion protein TraS | - |
| GUU82_RS24265 () | 85475..88300 | - | 2826 | WP_089590494.1 | conjugal transfer mating pair stabilization protein TraG | - |
| GUU82_RS24270 () | 88297..89670 | - | 1374 | WP_001137358.1 | conjugal transfer protein TraH | - |
| GUU82_RS24275 () | 89670..90032 | - | 363 | WP_089590493.1 | P-type conjugative transfer protein TrbJ | - |
| GUU82_RS24280 () | 89962..90507 | - | 546 | WP_089590492.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| GUU82_RS24285 () | 90494..90775 | - | 282 | WP_089590491.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| GUU82_RS24290 () | 90891..91634 | - | 744 | WP_122987047.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| GUU82_RS24295 () | 91627..91887 | - | 261 | WP_000864348.1 | conjugal transfer protein TrbE | - |
| GUU82_RS24300 () | 91914..93722 | - | 1809 | WP_089590489.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| GUU82_RS24305 () | 93719..94357 | - | 639 | WP_000777692.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| GUU82_RS24310 () | 94366..95358 | - | 993 | WP_000830839.1 | conjugal transfer pilus assembly protein TraU | - |
| GUU82_RS24315 () | 95355..95987 | - | 633 | WP_089590488.1 | type-F conjugative transfer system protein TraW | - |
| GUU82_RS24320 () | 95984..96370 | - | 387 | WP_032215886.1 | type-F conjugative transfer system protein TrbI | - |
| GUU82_RS24325 () | 96367..98997 | - | 2631 | WP_000069757.1 | type IV secretion system protein TraC | - |
| GUU82_RS24330 () | 99123..99485 | - | 363 | WP_122987051.1 | hypothetical protein | - |
| GUU82_RS24335 () | 99808..100281 | - | 474 | WP_024214916.1 | hypothetical protein | - |
| GUU82_RS24340 () | 100274..100687 | - | 414 | WP_000549581.1 | hypothetical protein | - |
| GUU82_RS24345 () | 100680..100901 | - | 222 | WP_001278695.1 | conjugal transfer protein TraR | - |
| GUU82_RS24350 () | 101036..101551 | - | 516 | WP_000809874.1 | type IV conjugative transfer system lipoprotein TraV | - |
| GUU82_RS24355 () | 101548..101916 | - | 369 | WP_001315561.1 | conjugal transfer protein TrbD | - |
| GUU82_RS24360 () | 101855..102445 | - | 591 | WP_000002784.1 | conjugal transfer protein TraP | - |
| GUU82_RS24365 () | 102435..103862 | - | 1428 | WP_000146657.1 | conjugal transfer protein TraB | - |
| GUU82_RS24370 () | 103862..104566 | - | 705 | WP_157902259.1 | type-F conjugative transfer system secretin TraK | - |
| GUU82_RS24375 () | 104577..105143 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| GUU82_RS24380 () | 105165..105476 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| GUU82_RS24385 () | 105491..105850 | - | 360 | WP_000994781.1 | type IV conjugative transfer system pilin TraA | - |
| GUU82_RS24390 () | 105883..106278 | - | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| GUU82_RS24395 () | 106377..107066 | - | 690 | WP_000283380.1 | conjugal transfer transcriptional regulator TraJ | - |
| GUU82_RS24400 () | 107259..107642 | - | 384 | WP_089590581.1 | relaxosome protein TraM | - |
| GUU82_RS24405 () | 107975..108565 | + | 591 | WP_001375132.1 | hypothetical protein | VF |
| GUU82_RS24410 () | 108861..109682 | - | 822 | WP_001234475.1 | DUF945 domain-containing protein | - |
| GUU82_RS24415 () | 109801..110088 | - | 288 | WP_000107542.1 | hypothetical protein | - |
| GUU82_RS24810 () | 110113..110319 | - | 207 | WP_000547965.1 | hypothetical protein | - |
| GUU82_RS24425 () | 110987..111145 | - | 159 | WP_001302184.1 | type I toxin-antitoxin system Hok family toxin | - |
| GUU82_RS24430 () | 111217..112290 | + | 1074 | WP_160183295.1 | IS481 family transposase ISKpn28 | Transposase |
| - () | 112311..112509 | - | 199 | NuclAT_0 | - | - |
| - () | 112311..112509 | - | 199 | NuclAT_0 | - | - |
| - () | 112311..112509 | - | 199 | NuclAT_0 | - | - |
| - () | 112311..112509 | - | 199 | NuclAT_0 | - | - |
| GUU82_RS24435 () | 112521..113240 | - | 720 | WP_000116348.1 | plasmid SOS inhibition protein A | - |
| GUU82_RS24440 () | 113237..113671 | - | 435 | WP_000845928.1 | conjugation system SOS inhibitor PsiB | - |
| GUU82_RS24445 () | 113726..115684 | - | 1959 | WP_160183296.1 | ParB/RepB/Spo0J family partition protein | - |
| GUU82_RS24450 () | 115750..115983 | - | 234 | WP_000005990.1 | DUF905 family protein | - |
| GUU82_RS24455 () | 116040..116579 | - | 540 | WP_000290799.1 | single-stranded DNA-binding protein | - |
| GUU82_RS24465 () | 117376..117567 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| GUU82_RS24470 () | 117564..117986 | - | 423 | WP_000271685.1 | DUF1380 family protein | - |
| GUU82_RS24475 () | 118033..118335 | - | 303 | WP_072095193.1 | antirestriction protein | - |
| GUU82_RS24815 () | 118872..119648 | - | 777 | WP_001005032.1 | hypothetical protein | - |
| GUU82_RS24490 () | 119694..120248 | - | 555 | WP_001358893.1 | DUF1380 family protein | - |
| GUU82_RS24495 () | 120142..120363 | - | 222 | WP_001104904.1 | hypothetical protein | - |
| GUU82_RS24500 () | 120364..121047 | - | 684 | WP_000085939.1 | DNA methylase | - |
| GUU82_RS24505 () | 121124..121429 | - | 306 | WP_010891292.1 | hypothetical protein | - |
| GUU82_RS24820 () | 121433..122334 | - | 902 | Protein_119 | DUF1281 domain-containing protein | - |
| GUU82_RS24520 () | 123244..124215 | - | 972 | WP_000817031.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| GUU82_RS24525 () | 124215..125381 | - | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| GUU82_RS24530 () | 125969..126724 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| GUU82_RS24535 () | 127446..128252 | - | 807 | WP_000016982.1 | site-specific integrase | - |
| GUU82_RS24540 () | 128253..128558 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| GUU82_RS24545 () | 128560..128778 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| GUU82_RS24550 () | 129492..132113 | + | 2622 | WP_000283688.1 | histidinol-phosphatase | - |
| GUU82_RS24555 () | 132312..132542 | + | 231 | WP_001261274.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| GUU82_RS24560 () | 132631..132906 | + | 276 | WP_001403920.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| GUU82_RS24565 () | 132911..133128 | - | 218 | Protein_129 | transposase | - |
| GUU82_RS24570 () | 133129..133659 | - | 531 | WP_000348883.1 | GNAT family N-acetyltransferase | - |
| GUU82_RS24575 () | 133663..133932 | - | 270 | WP_001275013.1 | DUF1778 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|