MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 136649 bp
Accession: NZ_CP047218 Location: 1554709..1691357 Organism: Sphingobium yanoikuyae strain YC-JY1 Replicon: chromosome
Accession: NZ_CP047218 Location: 1554709..1691357 Organism: Sphingobium yanoikuyae strain YC-JY1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GS397_RS07455 () | 1550245..1551234 | - | 990 | WP_201450316.1 | L,D-transpeptidase | - |
| GS397_RS07460 () | 1551423..1552376 | + | 954 | WP_201450274.1 | LysR family transcriptional regulator | - |
| GS397_RS07465 () | 1552501..1553475 | + | 975 | WP_159366111.1 | alpha/beta hydrolase | - |
| GS397_RS07470 () | 1553537..1554166 | + | 630 | WP_159366112.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| GS397_RS07475 () | 1554166..1554636 | + | 471 | WP_159367950.1 | nuclear transport factor 2 family protein | - |
| GS397_RS07480 () | 1554885..1556177 | + | 1293 | WP_017501547.1 | hypothetical protein ; Integrase | Integrase |
| GS397_RS07485 () | 1556241..1557146 | - | 906 | WP_017501548.1 | HTH-type transcriptional regulator DmlR | VF |
| GS397_RS07490 () | 1557354..1558466 | + | 1113 | WP_017501549.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| GS397_RS07495 () | 1558492..1558893 | + | 402 | WP_201450317.1 | VOC family protein | - |
| GS397_RS07500 () | 1558903..1559751 | + | 849 | WP_026109246.1 | S-formylglutathione hydrolase | - |
| GS397_RS07505 () | 1559751..1560062 | + | 312 | WP_017501552.1 | 2Fe-2S iron-sulfur cluster binding domain-containing protein | - |
| GS397_RS07510 () | 1560068..1560469 | + | 402 | WP_026109247.1 | nuclear transport factor 2 family protein | - |
| GS397_RS07515 () | 1560466..1561068 | + | 603 | WP_080993651.1 | GNAT family N-acetyltransferase | - |
| GS397_RS07520 () | 1561077..1562045 | + | 969 | WP_159366113.1 | carbon-nitrogen hydrolase family protein | - |
| GS397_RS07525 () | 1562042..1563262 | + | 1221 | WP_159366114.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| GS397_RS07530 () | 1563376..1563522 | + | 147 | WP_157228514.1 | TetR family transcriptional regulator | - |
| GS397_RS07535 () | 1563707..1564618 | - | 912 | WP_048938628.1 | LysR family transcriptional regulator | - |
| GS397_RS07540 () | 1564782..1567085 | + | 2304 | WP_017502799.1 | TonB-dependent receptor | - |
| GS397_RS07545 () | 1567075..1568469 | + | 1395 | WP_107917611.1 | purine permease | - |
| GS397_RS07550 () | 1568471..1569499 | + | 1029 | WP_026109529.1 | isopenicillin N synthase family oxygenase | - |
| GS397_RS07555 () | 1569501..1570484 | + | 984 | WP_159366115.1 | isopenicillin N synthase family oxygenase | - |
| GS397_RS07560 () | 1570496..1570888 | + | 393 | WP_017502795.1 | VOC family protein | - |
| GS397_RS07565 () | 1570885..1571964 | + | 1080 | WP_017502794.1 | Rieske 2Fe-2S domain-containing protein | - |
| GS397_RS07570 () | 1572165..1573742 | + | 1578 | WP_201450318.1 | gamma-glutamyltransferase family protein | - |
| GS397_RS07575 () | 1573736..1574992 | + | 1257 | WP_159366117.1 | N-carbamoyl-L-amino acid hydrolase | VF |
| GS397_RS07580 () | 1575030..1576226 | + | 1197 | WP_201450319.1 | alanine--glyoxylate aminotransferase family protein | - |
| GS397_RS07585 () | 1576223..1577110 | + | 888 | WP_038293028.1 | allantoinase PuuE | - |
| GS397_RS07590 () | 1577103..1577576 | + | 474 | WP_159366119.1 | 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase | - |
| GS397_RS07595 () | 1577573..1578994 | + | 1422 | WP_017502788.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| GS397_RS07600 () | 1578991..1579320 | + | 330 | WP_017502787.1 | hydroxyisourate hydrolase | - |
| GS397_RS07605 () | 1579327..1579506 | + | 180 | WP_017502786.1 | DUF4089 domain-containing protein | - |
| GS397_RS07610 () | 1579503..1580840 | + | 1338 | WP_017502785.1 | Biuret hydrolase | VF |
| GS397_RS07615 () | 1580837..1581217 | + | 381 | WP_048938630.1 | oxalurate catabolism protein HpxZ | - |
| GS397_RS07620 () | 1581214..1582200 | + | 987 | WP_159366120.1 | bile acid:sodium symporter | - |
| GS397_RS07625 () | 1582220..1582753 | - | 534 | WP_159366121.1 | phosphoribosyltransferase | - |
| GS397_RS07630 () | 1582763..1583716 | - | 954 | WP_159366122.1 | LysR family transcriptional regulator | - |
| GS397_RS07635 () | 1583853..1584851 | + | 999 | WP_048938654.1 | isopenicillin N synthase family oxygenase | - |
| GS397_RS07640 () | 1585437..1585847 | + | 411 | WP_136187475.1 | hypothetical protein | - |
| GS397_RS07645 () | 1585822..1589550 | - | 3729 | WP_159366123.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| GS397_RS07650 () | 1589566..1591029 | - | 1464 | WP_017502982.1 | conjugal transfer protein TraH | - |
| GS397_RS07655 () | 1591080..1591670 | - | 591 | WP_038293044.1 | hypothetical protein | - |
| GS397_RS07660 () | 1591667..1592509 | - | 843 | WP_157228563.1 | conjugal transfer protein TraF | - |
| GS397_RS07665 () | 1592518..1593117 | - | 600 | WP_026109567.1 | S26 family signal peptidase | - |
| GS397_RS07670 () | 1593089..1593826 | - | 738 | WP_038293045.1 | hypothetical protein | - |
| GS397_RS07675 () | 1593924..1595012 | - | 1089 | WP_017502987.1 | conjugal transfer protein TraN | - |
| GS397_RS07680 () | 1595009..1596934 | - | 1926 | WP_159366124.1 | hypothetical protein | - |
| GS397_RS07685 () | 1597297..1598310 | - | 1014 | WP_017500729.1 | TraU family protein | - |
| GS397_RS07690 () | 1598307..1598936 | - | 630 | WP_157228479.1 | conjugal transfer protein TraW | - |
| GS397_RS07695 () | 1598926..1599165 | - | 240 | WP_017500731.1 | hypothetical protein | - |
| GS397_RS07700 () | 1599162..1599506 | - | 345 | WP_157228485.1 | hypothetical protein | - |
| GS397_RS07705 () | 1599506..1602034 | - | 2529 | WP_017500733.1 | TraC family protein | - |
| GS397_RS07710 () | 1602031..1602639 | - | 609 | WP_159366125.1 | TraV family lipoprotein | - |
| GS397_RS07715 () | 1602672..1604021 | - | 1350 | WP_201450275.1 | TraB/VirB10 family protein | - |
| GS397_RS07720 () | 1604018..1604797 | - | 780 | WP_159366126.1 | type-F conjugative transfer system secretin TraK | - |
| GS397_RS07725 () | 1604781..1605416 | - | 636 | WP_159366127.1 | conjugal transfer protein | - |
| GS397_RS07730 () | 1605424..1605690 | - | 267 | WP_037520688.1 | membrane protein | - |
| GS397_RS07735 () | 1605808..1606137 | - | 330 | WP_037520686.1 | hypothetical protein | - |
| GS397_RS07740 () | 1606309..1607097 | - | 789 | WP_037520684.1 | DsbC family protein | - |
| GS397_RS07745 () | 1607736..1608149 | + | 414 | WP_037520682.1 | hypothetical protein | - |
| GS397_RS07750 () | 1608306..1608719 | + | 414 | WP_037520746.1 | helix-turn-helix domain-containing protein | - |
| GS397_RS07755 () | 1608734..1609405 | + | 672 | WP_080727252.1 | GntR family transcriptional regulator | - |
| GS397_RS07760 () | 1609545..1609676 | + | 132 | WP_159078611.1 | benenodin family lasso peptide | - |
| GS397_RS07765 () | 1609742..1610407 | + | 666 | WP_080727251.1 | lasso peptide biosynthesis B2 protein | - |
| GS397_RS07770 () | 1610404..1612125 | + | 1722 | WP_037520678.1 | asparagine synthetase B family protein | - |
| GS397_RS07775 () | 1612064..1614211 | - | 2148 | WP_080727250.1 | Atxe2 family lasso peptide isopeptidase | - |
| GS397_RS07780 () | 1614213..1616792 | - | 2580 | WP_051886799.1 | TonB-dependent receptor | - |
| GS397_RS07785 () | 1616859..1617905 | - | 1047 | WP_037520676.1 | FecR domain-containing protein | - |
| GS397_RS07790 () | 1617907..1618524 | - | 618 | WP_053094334.1 | sigma-70 family RNA polymerase sigma factor | - |
| GS397_RS07795 () | 1619232..1622015 | - | 2784 | WP_066768143.1 | TonB-dependent receptor | - |
| GS397_RS07800 () | 1622052..1623047 | - | 996 | WP_051886791.1 | DUF4880 domain-containing protein | - |
| GS397_RS07805 () | 1623014..1623592 | - | 579 | WP_037520673.1 | RNA polymerase sigma factor | - |
| GS397_RS07810 () | 1623868..1626348 | + | 2481 | WP_029547435.1 | TonB-dependent receptor | - |
| GS397_RS07815 () | 1626351..1627904 | + | 1554 | WP_010335852.1 | CehA/McbA family metallohydrolase | - |
| GS397_RS07820 () | 1628173..1628805 | - | 633 | WP_037520738.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| GS397_RS07825 () | 1628998..1630440 | - | 1443 | WP_037520671.1 | TolC family protein | - |
| GS397_RS07830 () | 1630443..1631507 | - | 1065 | WP_037520670.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| GS397_RS07835 () | 1631504..1633186 | - | 1683 | WP_037520668.1 | ABC transporter ATP-binding protein | - |
| GS397_RS07840 () | 1633644..1634060 | - | 417 | WP_037520666.1 | Cu(I)-responsive transcriptional regulator | - |
| GS397_RS07845 () | 1634057..1636420 | - | 2364 | WP_037520664.1 | heavy metal translocating P-type ATPase | - |
| GS397_RS07850 () | 1636591..1636929 | + | 339 | WP_037520662.1 | hypothetical protein | - |
| GS397_RS07855 () | 1636960..1637226 | + | 267 | WP_021236450.1 | hypothetical protein | - |
| GS397_RS07860 () | 1637313..1639097 | + | 1785 | WP_037520660.1 | copper resistance system multicopper oxidase | - |
| GS397_RS07865 () | 1639094..1640110 | + | 1017 | WP_037520659.1 | copper resistance protein B | - |
| GS397_RS07870 () | 1640349..1640774 | - | 426 | WP_048937977.1 | SOS response-associated peptidase family protein | - |
| GS397_RS07875 () | 1640929..1641546 | + | 618 | WP_037520655.1 | SOS response-associated peptidase | - |
| GS397_RS07880 () | 1641546..1641968 | + | 423 | WP_037520652.1 | DUF1810 domain-containing protein | - |
| GS397_RS07885 () | 1642069..1642845 | + | 777 | WP_196221872.1 | protein ImuA | - |
| GS397_RS07890 () | 1642763..1644595 | + | 1833 | WP_080727258.1 | DNA polymerase Y family protein | - |
| GS397_RS07895 () | 1644595..1647858 | + | 3264 | WP_037520651.1 | error-prone DNA polymerase | - |
| GS397_RS07900 () | 1648019..1648780 | - | 762 | WP_080727248.1 | TatD family hydrolase | - |
| GS397_RS07905 () | 1648777..1650057 | - | 1281 | WP_201450276.1 | hypothetical protein | - |
| GS397_RS07910 () | 1650054..1650590 | - | 537 | WP_143840481.1 | hypothetical protein | - |
| GS397_RS07915 () | 1650977..1652863 | - | 1887 | WP_051886786.1 | hypothetical protein | - |
| GS397_RS07920 () | 1653200..1653787 | + | 588 | WP_155186304.1 | hypothetical protein | - |
| GS397_RS07925 () | 1653966..1654415 | + | 450 | WP_037520643.1 | helix-turn-helix domain-containing protein | - |
| GS397_RS07930 () | 1654412..1654990 | + | 579 | WP_037520641.1 | PIN domain-containing protein | - |
| GS397_RS07935 () | 1654987..1656369 | + | 1383 | WP_201450277.1 | hypothetical protein | - |
| GS397_RS07940 () | 1656379..1656765 | + | 387 | WP_037520639.1 | hypothetical protein | - |
| GS397_RS07945 () | 1656762..1657154 | + | 393 | WP_159366128.1 | hypothetical protein | - |
| GS397_RS07950 () | 1657208..1658014 | - | 807 | WP_159366129.1 | IS21 family transposase IS1600 | Transposase |
| GS397_RS07955 () | 1658004..1659527 | - | 1524 | WP_159366130.1 | IS21 family transposase ISRsp3 | Transposase |
| GS397_RS07960 () | 1659982..1660902 | - | 921 | WP_037520638.1 | HEPN domain-containing protein | - |
| GS397_RS07965 () | 1660902..1661339 | - | 438 | WP_037520637.1 | PIN domain-containing protein | Toxin Detail |
| GS397_RS07970 () | 1661336..1661560 | - | 225 | WP_196221871.1 | CopG family transcriptional regulator | Antitoxin Detail |
| GS397_RS07975 () | 1661592..1661951 | - | 360 | WP_159366131.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| GS397_RS07980 () | 1662056..1662955 | - | 900 | WP_037520632.1 | phytanoyl-CoA dioxygenase family protein | - |
| GS397_RS07985 () | 1662967..1663581 | - | 615 | WP_037520631.1 | Acyl-homoserine-lactone synthase | VF |
| GS397_RS07990 () | 1663720..1664478 | - | 759 | WP_037520629.1 | LuxR family transcriptional regulator | - |
| GS397_RS07995 () | 1665075..1665350 | - | 276 | WP_037520628.1 | HU family DNA-binding protein | - |
| GS397_RS08000 () | 1665427..1665693 | - | 267 | WP_037520626.1 | hypothetical protein | - |
| GS397_RS08005 () | 1665897..1666976 | - | 1080 | WP_037520625.1 | endonuclease/exonuclease/phosphatase family protein | - |
| GS397_RS08010 () | 1667149..1667367 | + | 219 | WP_037520624.1 | hypothetical protein | - |
| GS397_RS08015 () | 1667412..1668203 | - | 792 | WP_037520622.1 | hypothetical protein | - |
| GS397_RS08020 () | 1668528..1669331 | - | 804 | WP_037520620.1 | fructosamine kinase family protein | - |
| GS397_RS08025 () | 1669528..1670778 | - | 1251 | WP_159366132.1 | TIR domain-containing protein | - |
| GS397_RS08030 () | 1671058..1672923 | - | 1866 | WP_066667215.1 | reverse transcriptase/maturase family protein | - |
| GS397_RS27870 () | 1673800..1674144 | + | 345 | Protein_1595 | ParB N-terminal domain-containing protein | - |
| GS397_RS08040 () | 1674465..1675616 | + | 1152 | WP_099232343.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| GS397_RS08045 () | 1675609..1677357 | + | 1749 | WP_099232344.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| GS397_RS08050 () | 1677354..1679195 | + | 1842 | WP_099232345.1 | hypothetical protein ; Integrase | Integrase |
| GS397_RS08055 () | 1679200..1679685 | + | 486 | WP_099232346.1 | hypothetical protein | - |
| GS397_RS08060 () | 1679738..1681270 | + | 1533 | WP_136187455.1 | chromosome partitioning protein ParB | - |
| GS397_RS08065 () | 1681330..1681548 | + | 219 | WP_037520615.1 | sigma-70 region 4 domain-containing protein | - |
| GS397_RS08070 () | 1682016..1682960 | + | 945 | WP_063977009.1 | DUF1738 domain-containing protein | - |
| GS397_RS08075 () | 1682957..1683382 | + | 426 | WP_037520612.1 | DUF2958 domain-containing protein | - |
| GS397_RS08080 () | 1683449..1683760 | + | 312 | WP_155186302.1 | hypothetical protein | - |
| GS397_RS08085 () | 1684076..1684291 | + | 216 | WP_037520609.1 | hypothetical protein | - |
| GS397_RS08090 () | 1684760..1685062 | + | 303 | WP_037520608.1 | hypothetical protein | - |
| GS397_RS08095 () | 1685059..1687062 | + | 2004 | WP_037520607.1 | type IV secretion system DNA-binding domain-containing protein | - |
| GS397_RS08100 () | 1687059..1689992 | + | 2934 | WP_037520605.1 | relaxase domain-containing protein | - |
| GS397_RS08105 () | 1690009..1690515 | + | 507 | WP_080727256.1 | lytic transglycosylase domain-containing protein | - |
| GS397_RS08115 () | 1691695..1692483 | - | 789 | WP_125985855.1 | SapC family protein | - |
| GS397_RS08120 () | 1692600..1694054 | - | 1455 | WP_159366133.1 | FAD-binding oxidoreductase | - |
| GS397_RS08125 () | 1694132..1694563 | + | 432 | WP_004207401.1 | hypothetical protein | - |
| GS397_RS08130 () | 1694698..1696089 | + | 1392 | WP_159366134.1 | DEAD/DEAH box helicase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|