MGE detailed information

MGE type: Integrative_Conjugative_Elements        MGE length: 184637 bp
Accession: NZ_CP044313        Location: 2457056..2641692         Organism: Escherichia coli strain RM11911       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
F7D04_RS12340 () 2453004..2454521 - 1518 WP_061317333.1 UvrD-helicase domain-containing protein -
F7D04_RS12345 () 2455128..2455772 - 645 WP_040089481.1 hypothetical protein -
F7D04_RS12350 () 2455793..2456107 - 315 WP_151039364.1 PerC family transcriptional regulator -
F7D04_RS12355 () 2456142..2456780 - 639 WP_040089482.1 ParB N-terminal domain-containing protein -
F7D04_RS12360 () 2456765..2457997 - 1233 WP_040089483.1 phosphoadenosine phosphosulfate reductase -
F7D04_RS12365 () 2458138..2458782 - 645 WP_170989474.1 hypothetical protein -
F7D04_RS12370 () 2458899..2460049 - 1151 Protein_2426 hypothetical protein VF
F7D04_RS12375 () 2460475..2462220 - 1746 WP_122992006.1 NERD domain-containing protein -
F7D04_RS12380 () 2462398..2462946 - 549 WP_072278218.1 Outer membrane protein X VF
F7D04_RS12385 () 2463914..2464852 - 939 Protein_2429 VENN motif pre-toxin domain-containing protein -
F7D04_RS12390 () 2464987..2465244 - 258 WP_040089554.1 hypothetical protein -
F7D04_RS12395 () 2465241..2474219 - 8979 WP_151039366.1 16S rRNA endonuclease CdiA VF
F7D04_RS12400 () 2474235..2474762 - 528 WP_001243916.1 Leukotoxin-activating lysine-acyltransferase LtxC VF
F7D04_RS12405 () 2474772..2476424 - 1653 WP_061341861.1 ShlB/FhaC/HecB family hemolysin secretion/activation protein -
F7D04_RS12410 () 2477101..2477325 + 225 WP_032152656.1 DUF4222 domain-containing protein -
F7D04_RS12415 () 2477334..2477567 - 234 WP_021580257.1 hypothetical protein -
F7D04_RS12420 () 2477654..2478277 - 624 WP_050940555.1 hypothetical protein -
F7D04_RS12425 () 2478889..2479032 + 144 WP_157839846.1 hypothetical protein -
F7D04_RS12430 () 2479152..2479664 + 513 WP_040089161.1 ProQ/FinO family protein -
F7D04_RS12435 () 2479840..2480019 - 180 Protein_2439 transposase domain-containing protein -
F7D04_RS12440 () 2480497..2481089 - 593 Protein_2440 porin -
F7D04_RS12445 () 2481663..2482274 + 612 WP_021580263.1 YfdX family protein -
F7D04_RS12450 () 2482480..2484090 - 1611 WP_151039456.1 ISL3 family transposase ISEc38 Transposase
F7D04_RS12455 () 2484171..2485193 + 1023 WP_000255944.1 IS21 family transposase IS100kyp Transposase
F7D04_RS12460 () 2485193..2485972 + 780 WP_001323403.1 IS21 family transposase IS100kyp Transposase
F7D04_RS12465 () 2486434..2487225 + 792 WP_040089475.1 hypothetical protein -
F7D04_RS12470 () 2487578..2487811 + 234 WP_077820601.1 AlpA family transcriptional regulator -
F7D04_RS12475 () 2487897..2488469 + 573 WP_050940575.1 hypothetical protein -
F7D04_RS12480 () 2488644..2488789 + 146 Protein_2448 IS1 family transposase -
F7D04_RS12485 () 2489959..2490978 + 1020 WP_050940578.1 transcriptional regulator -
F7D04_RS12490 () 2491088..2491960 + 873 WP_050940580.1 GTPase family protein -
F7D04_RS12495 () 2492333..2495182 + 2850 WP_151039368.1 calcium-binding autotransporter Cah -
F7D04_RS12500 () 2495303..2497819 + 2517 WP_050940602.1 hypothetical protein -
F7D04_RS12505 () 2497895..2498350 + 456 WP_000581504.1 hypothetical protein -
F7D04_RS12510 () 2498429..2498662 + 234 WP_001119729.1 DUF905 family protein -
F7D04_RS12515 () 2498762..2499580 + 819 WP_001234620.1 DUF945 domain-containing protein -
F7D04_RS12520 () 2499635..2500120 + 486 WP_050938918.1 antirestriction protein -
F7D04_RS12525 () 2500136..2500612 + 477 WP_001186727.1 RadC family protein -
F7D04_RS12530 () 2500675..2500896 + 222 WP_050938919.1 DUF987 domain-containing protein -
F7D04_RS12535 () 2501059..2501427 + 369 WP_001339471.1 type IV toxin-antitoxin system YeeU family antitoxin Antitoxin Detail
F7D04_RS12540 () 2501517..2501894 + 378 WP_050938921.1 TA system toxin CbtA family protein Toxin Detail
F7D04_RS12545 () 2501891..2502379 + 489 WP_000761721.1 hypothetical protein -
F7D04_RS12550 () 2502391..2502588 + 198 WP_000839281.1 DUF957 domain-containing protein -
F7D04_RS12555 () 2502685..2503257 + 573 WP_001290246.1 DUF4942 domain-containing protein -
F7D04_RS12560 () 2503538..2504074 - 537 WP_000942795.1 Type II secretion system protein M VF
F7D04_RS12565 () 2504076..2505254 - 1179 WP_000094974.1 Type II secretion system protein L VF
F7D04_RS12570 () 2505251..2506228 - 978 WP_000633238.1 Putative type II secretion system protein K VF
F7D04_RS12575 () 2506231..2506830 - 600 WP_064760790.1 Type II secretion system protein J VF
F7D04_RS12580 () 2506827..2507198 - 372 WP_000820125.1 Type II secretion system protein I VF
F7D04_RS12585 () 2507195..2507758 - 564 WP_001115139.1 Type II secretion system protein H VF
F7D04_RS12590 () 2507762..2508217 - 456 WP_001087296.1 Type II secretion system protein G VF
F7D04_RS12595 () 2508234..2509457 - 1224 WP_001173448.1 Type II secretion system protein F VF
F7D04_RS12600 () 2509457..2509774 - 318 Protein_2472 Type II secretion system protein E VF
F7D04_RS12605 () 2509967..2510470 - 504 WP_040100330.1 hypothetical protein -
F7D04_RS12610 () 2510589..2511293 - 705 WP_040100331.1 hypothetical protein -
F7D04_RS12615 () 2511244..2511429 - 186 WP_001372435.1 Com family DNA-binding transcriptional regulator -
F7D04_RS12620 () 2511549..2512115 - 567 WP_040100333.1 DUF4376 domain-containing protein -
F7D04_RS12625 () 2514172..2514720 - 549 Protein_2477 prophage tail fiber N-terminal domain-containing protein -
F7D04_RS12630 () 2514707..2515237 - 531 WP_052924219.1 tail fiber assembly protein -
F7D04_RS12635 () 2515252..2515770 - 519 WP_077793277.1 hypothetical protein -
F7D04_RS12640 () 2515873..2516247 - 375 Protein_2480 phage tail protein -
F7D04_RS12645 () 2516251..2516835 - 585 WP_040100337.1 DUF2313 domain-containing protein -
F7D04_RS12650 () 2516820..2517896 - 1077 WP_040100339.1 baseplate J/gp47 family protein -
F7D04_RS12655 () 2517886..2518338 - 453 WP_040100341.1 phage GP46 family protein -
F7D04_RS12660 () 2518335..2518871 - 537 WP_000523890.1 phage baseplate assembly protein V -
F7D04_RS12665 () 2518862..2519932 - 1071 WP_052924218.1 phage tail protein -
F7D04_RS12670 () 2519932..2521206 - 1275 WP_052924217.1 DNA circularization N-terminal domain-containing protein -
F7D04_RS12675 () 2521206..2522999 - 1794 WP_052924216.1 phage tail protein -
F7D04_RS12680 () 2522986..2523123 - 138 WP_001127483.1 hypothetical protein -
F7D04_RS12685 () 2523086..2523481 - 396 WP_052924215.1 phage tail assembly protein -
F7D04_RS12690 () 2523483..2523839 - 357 WP_001062748.1 phage tail tube protein -
F7D04_RS12695 () 2523849..2525324 - 1476 WP_040100351.1 phage tail sheath subtilisin-like domain-containing protein -
F7D04_RS12700 () 2525324..2525509 - 186 WP_052924214.1 DUF2635 domain-containing protein -
F7D04_RS12705 () 2525490..2526101 - 612 WP_052924213.1 hypothetical protein -
F7D04_RS12710 () 2526098..2526640 - 543 WP_000513058.1 phage virion morphogenesis protein -
F7D04_RS12715 () 2526640..2527077 - 438 WP_000540583.1 DUF1320 domain-containing protein -
F7D04_RS12720 () 2527077..2527388 - 312 WP_001290368.1 hypothetical protein -
F7D04_RS12725 () 2527467..2528369 - 903 WP_052924212.1 Mu-like prophage major head subunit gpT family protein -
F7D04_RS12730 () 2528369..2529331 - 963 WP_052924211.1 peptidase -
F7D04_RS12735 () 2529545..2530309 - 765 WP_052924210.1 hypothetical protein -
F7D04_RS12740 () 2530302..2531873 - 1572 WP_052924209.1 DUF935 domain-containing protein -
F7D04_RS12745 () 2531870..2533396 - 1527 WP_112793722.1 terminase family protein -
F7D04_RS12750 () 2533402..2533983 - 582 WP_052924208.1 DUF3486 family protein -
F7D04_RS12755 () 2533973..2534131 - 159 WP_001080359.1 hypothetical protein -
F7D04_RS12760 () 2534121..2534420 - 300 WP_040100367.1 hypothetical protein -
F7D04_RS12765 () 2534423..2534710 - 288 WP_024168521.1 hypothetical protein -
F7D04_RS12770 () 2534716..2535021 - 306 WP_001557437.1 DUF2730 family protein -
F7D04_RS12775 () 2535006..2535233 - 228 WP_052924207.1 TraR/DksA C4-type zinc finger protein -
F7D04_RS12780 () 2535230..2535838 - 609 WP_000371427.1 hypothetical protein -
F7D04_RS12785 () 2535826..2536236 - 411 WP_052924206.1 hypothetical protein -
F7D04_RS12790 () 2536220..2536447 - 228 WP_052924205.1 hypothetical protein -
F7D04_RS12795 () 2536449..2537045 - 597 WP_040100373.1 N-acetylmuramidase -
F7D04_RS12800 () 2537131..2537580 - 450 WP_040100375.1 Middle operon regulator -
F7D04_RS12805 () 2537577..2538128 - 552 WP_040100376.1 regulatory protein GemA -
F7D04_RS12810 () 2538106..2538495 - 390 WP_040100378.1 hypothetical protein -
F7D04_RS12815 () 2538488..2538670 - 183 WP_040100379.1 hypothetical protein -
F7D04_RS12820 () 2538663..2539205 - 543 WP_151039372.1 hypothetical protein -
F7D04_RS12825 () 2539305..2539829 - 525 WP_001107927.1 host-nuclease inhibitor Gam family protein -
F7D04_RS12830 () 2539850..2540137 - 288 WP_040100384.1 hypothetical protein -
F7D04_RS12835 () 2540157..2540426 - 270 WP_001151278.1 hypothetical protein -
F7D04_RS12840 () 2540459..2540686 - 228 WP_000987801.1 hypothetical protein -
F7D04_RS12845 () 2540700..2541638 - 939 WP_001026713.1 AAA family ATPase -
F7D04_RS12850 () 2541677..2543665 - 1989 WP_040100386.1 Mu transposase C-terminal domain-containing protein -
F7D04_RS12855 () 2543673..2543894 - 222 WP_001473846.1 helix-turn-helix domain-containing protein -
F7D04_RS12860 () 2544082..2544606 + 525 WP_040100388.1 hypothetical protein -
F7D04_RS12865 () 2544936..2546108 - 1173 Protein_2525 Type II secretion system protein E VF
F7D04_RS12870 () 2546108..2548168 - 2061 WP_000498836.1 Type II secretion system protein D VF
F7D04_RS12875 () 2548198..2549157 - 960 WP_050938923.1 Type II secretion system protein C VF
F7D04_RS12880 () 2549175..2549585 - 411 WP_001324279.1 type II secretion system pilot lipoprotein GspS-beta -
F7D04_RS12885 () 2549651..2550460 - 810 WP_001297673.1 Leader peptidase PppA VF
F7D04_RS12890 () 2550608..2555170 - 4563 WP_001034492.1 hypothetical protein VF
F7D04_RS12895 () 2555655..2557337 - 1683 WP_000259303.1 glycolate permease GlcA -
F7D04_RS12900 () 2557693..2559864 - 2172 WP_000084065.1 malate synthase G -
F7D04_RS12905 () 2559886..2560290 - 405 WP_000853256.1 protein GlcG -
F7D04_RS12910 () 2560295..2561518 - 1224 WP_050938924.1 glycolate oxidase subunit GlcF -
F7D04_RS12915 () 2561529..2562582 - 1054 Protein_2535 glycolate oxidase subunit GlcE -
F7D04_RS12920 () 2562582..2564081 - 1500 WP_000026117.1 glycolate oxidase subunit GlcD -
F7D04_RS12925 () 2564332..2565096 + 765 WP_001297764.1 transcriptional regulator GlcC -
F7D04_RS12930 () 2565103..2566245 - 1143 WP_000388786.1 DNA-binding protein -
F7D04_RS12935 () 2566607..2568337 + 1731 WP_000262905.1 Putative ligase VF
F7D04_RS12940 () 2568334..2569248 + 915 WP_001077137.1 NAD-dependent epimerase/dehydratase family protein -
F7D04_RS12945 () 2569280..2569528 + 249 WP_000248097.1 acyl carrier protein -
F7D04_RS12950 () 2569528..2570700 + 1173 WP_032264095.1 8-amino-7-oxononanoate synthase VF
F7D04_RS12955 () 2570735..2571814 - 1080 WP_088539159.1 LPS export ABC transporter permease LptG -
F7D04_RS12960 () 2571811..2572881 - 1071 WP_000779644.1 LPS export ABC transporter permease LptF -
F7D04_RS12965 () 2572912..2573472 - 561 WP_001298770.1 YtfJ family protein -
F7D04_RS12970 () 2573484..2574308 - 825 WP_000984977.1 hypothetical protein -
F7D04_RS12975 () 2574308..2575657 - 1350 WP_000896880.1 lipopolysaccharide biosynthesis protein -
F7D04_RS12980 () 2575703..2576461 - 759 WP_000339531.1 ATP-binding protein -
F7D04_RS12985 () 2576493..2577206 - 714 WP_001076228.1 thymidylate kinase -
F7D04_RS12990 () 2577380..2578072 + 693 WP_001190781.1 thymidylate kinase -
F7D04_RS12995 () 2578121..2579620 - 1500 WP_000933261.1 inorganic phosphate transporter PitB -
F7D04_RS13000 () 2579912..2581771 - 1860 WP_021534536.1 bifunctional glutathionylspermidine amidase/synthase -
F7D04_RS13005 () 2581976..2582842 + 867 WP_001298746.1 glutathione-dependent disulfide-bond oxidoreductase -
F7D04_RS13010 () 2583189..2584169 + 981 WP_000399648.1 IS110 family transposase IS621 Transposase
F7D04_RS13015 () 2584291..2584539 - 249 WP_000334896.1 hydrogenase maturation factor HybG -
F7D04_RS13020 () 2584552..2584893 - 342 WP_000544952.1 hydrogenase maturation nickel metallochaperone HypA -
F7D04_RS13025 () 2584886..2585374 - 489 WP_000134014.1 hydrogenase-2 assembly chaperone -
F7D04_RS13030 () 2585367..2585861 - 495 WP_001221953.1 HyaD/HybD family hydrogenase maturation endopeptidase -
F7D04_RS13035 () 2585861..2587564 - 1704 WP_000083065.1 hydrogenase 2 large subunit -
F7D04_RS13040 () 2587561..2588739 - 1179 WP_000017680.1 Ni/Fe-hydrogenase cytochrome b subunit -
F7D04_RS13045 () 2588729..2589715 - 987 WP_001081870.1 hydrogenase 2 operon protein HybA -
F7D04_RS13050 () 2589718..2590836 - 1119 WP_000145410.1 hydrogenase 2 small subunit -
F7D04_RS13055 () 2591025..2591312 - 288 WP_001059136.1 DUF2623 domain-containing protein -
F7D04_RS13060 () 2591431..2592318 - 888 WP_001137768.1 dienelactone hydrolase family protein -
F7D04_RS13065 () 2592475..2593515 + 1041 WP_000262150.1 L-glyceraldehyde 3-phosphate reductase -
F7D04_RS13070 () 2593555..2594049 - 495 WP_000439331.1 TIGR00645 family protein -
F7D04_RS13075 () 2594240..2595124 + 885 WP_000018758.1 putative oxidoreductase YghA VF
F7D04_RS13080 () 2595396..2595821 - 426 WP_001240712.1 TonB system transport protein ExbD -
F7D04_RS13085 () 2595828..2596562 - 735 WP_050938916.1 tol-pal system-associated acyl-CoA thioesterase -
F7D04_RS13090 () 2596814..2598001 + 1188 WP_001320425.1 cystathionine beta-lyase -
F7D04_RS13095 () 2598141..2598800 + 660 WP_000268419.1 DedA family protein -
F7D04_RS13100 () 2598840..2599796 - 957 WP_001389279.1 DNA-binding transcriptional regulator YqhC -
F7D04_RS13105 () 2599933..2601096 + 1164 WP_001058802.1 alcohol dehydrogenase -
F7D04_RS13110 () 2601201..2602028 + 828 WP_000013149.1 2,5-didehydrogluconate reductase DkgA -
F7D04_RS13115 () 2602228..2603154 + 927 WP_021534538.1 YbjP/YqhG family protein -
F7D04_RS13120 () 2603203..2603460 + 258 WP_000848536.1 lipoprotein YqhH -
F7D04_RS13125 () 2603503..2605722 - 2220 WP_000095187.1 YgiQ family radical SAM protein -
F7D04_RS13130 () 2605833..2607245 - 1413 WP_000059395.1 cell division protein FtsP -
F7D04_RS13135 () 2607320..2608057 - 738 WP_000965712.1 1-acylglycerol-3-phosphate O-acyltransferase -
F7D04_RS13140 () 2608290..2610548 - 2259 WP_001281881.1 DNA topoisomerase IV subunit A -
F7D04_RS13145 () 2611094..2611576 - 483 WP_000183481.1 GyrI-like domain-containing protein -
F7D04_RS13150 () 2611629..2612021 - 393 WP_000712658.1 OB fold stress tolerance protein YgiW -
F7D04_RS13155 () 2612173..2612832 + 660 WP_001221502.1 Transcriptional regulatory protein QseB VF
F7D04_RS13160 () 2612829..2614179 + 1351 Protein_2584 two-component system sensor histidine kinase QseC -
F7D04_RS13165 () 2614225..2614557 - 333 WP_000912120.1 DUF2645 family protein -
F7D04_RS13170 () 2614876..2615457 + 582 WP_000065430.1 NADPH:quinone oxidoreductase MdaB -
F7D04_RS13175 () 2615488..2615802 + 315 WP_000958598.1 antibiotic biosynthesis monooxygenase -
F7D04_RS13180 () 2615850..2617742 - 1893 WP_038976822.1 DNA topoisomerase IV subunit B -
F7D04_RS13185 () 2617771..2618352 - 582 WP_000105733.1 esterase YqiA -
F7D04_RS13190 () 2618352..2619179 - 828 WP_000444747.1 3',5'-cyclic-AMP phosphodiesterase -
F7D04_RS13195 () 2619204..2619626 - 423 WP_000833393.1 DUF1249 family protein -
F7D04_RS13200 () 2619627..2620256 - 630 WP_151039376.1 ADP-ribose diphosphatase -
F7D04_RS13205 () 2620461..2621942 + 1482 WP_050938914.1 outer membrane channel protein TolC -
F7D04_RS13210 () 2622090..2622761 + 672 WP_000831543.1 DUF1190 family protein -
F7D04_RS13215 () 2622767..2623927 + 1161 WP_000442860.1 glutathionylspermidine synthase family protein -
F7D04_RS13220 () 2623965..2624753 - 789 WP_001356237.1 4,5-DOPA dioxygenase extradiol -
F7D04_RS13225 () 2624896..2625669 + 774 WP_001295627.1 zinc transporter ZupT -
F7D04_RS13230 () 2625727..2625897 - 171 WP_000469266.1 hypothetical protein -
F7D04_RS13235 () 2626158..2626811 - 654 WP_001076986.1 3,4-dihydroxy-2-butanone-4-phosphate synthase -
F7D04_RS13240 () 2627185..2627475 + 291 WP_001297598.1 IS1182 family transposase ISBusp4 Transposase
F7D04_RS13245 () 2627758..2628309 + 552 WP_001272149.1 putative fimbrial-like protein YbgD VF
F7D04_RS13250 () 2628369..2630873 + 2505 WP_000277119.1 Outer membrane usher protein PapC VF
F7D04_RS13255 () 2630889..2631638 + 750 WP_001269825.1 Chaperone protein PapD VF
F7D04_RS13260 () 2631640..2632704 + 1065 WP_001269793.1 fimbrial protein -
F7D04_RS13265 () 2632747..2632947 - 201 WP_000350095.1 cell surface composition regulator GlgS -
F7D04_RS13270 () 2633216..2633845 + 630 WP_000599947.1 DUF1449 family protein -
F7D04_RS13275 () 2633872..2635533 + 1662 WP_000341046.1 flotillin family protein -
- () 2635730..2635871 - 142 NuclAT_2 - -
- () 2635730..2635871 - 142 NuclAT_2 - -
- () 2635730..2635871 - 142 NuclAT_2 - -
- () 2635730..2635871 - 142 NuclAT_2 - -
- () 2635730..2635871 - 142 NuclAT_8 - -
- () 2635730..2635871 - 142 NuclAT_8 - -
- () 2635730..2635871 - 142 NuclAT_8 - -
- () 2635730..2635871 - 142 NuclAT_8 - -
F7D04_RS13280 () 2635772..2635831 + 60 WP_100249846.1 type I toxin-antitoxin system Ibs family toxin -
- () 2636106..2636247 - 142 NuclAT_7 - -
- () 2636106..2636247 - 142 NuclAT_7 - -
- () 2636106..2636247 - 142 NuclAT_7 - -
- () 2636106..2636247 - 142 NuclAT_7 - -
F7D04_RS13285 () 2636148..2636207 + 60 WP_001387082.1 type I toxin-antitoxin system Ibs family toxin -
F7D04_RS13290 () 2636327..2637760 - 1434 WP_000869178.1 Bifunctional protein HldE VF
F7D04_RS13295 () 2637808..2640648 - 2841 WP_001324258.1 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase -
F7D04_RS13300 () 2640671..2641972 - 1302 WP_000046281.1 inorganic triphosphatase -
F7D04_RS13305 () 2642214..2642834 + 621 WP_001125331.1 SH3 domain-containing protein -
F7D04_RS13310 () 2642898..2644136 + 1239 WP_050938913.1 fused tRNA nucleotidyltransferase/2',3'-cyclic phosphodiesterase/2' nucleotidase/phosphatase Cca -
F7D04_RS13315 () 2644317..2645138 - 822 WP_001281927.1 undecaprenyl-diphosphate phosphatase -
F7D04_RS13320 () 2645229..2645597 - 369 WP_001295541.1 bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase -
F7D04_RS13325 () 2645702..2646319 + 618 WP_001272796.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance